CmoCh05G006900 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G006900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Cytochrome c oxidase subunit 6b-1) (1.9.3.1)
Location	Cmo_Chr05 : 3529235 .. 3532122 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTTCAACTTATACTGCGCCTTCGTCCACCTTCCATTGCAGAGTCTTCCGTTTGATCTCCTCACTTTTTTGGAGCTTGAATCGATCAGTCATGGCCGAGGTAAGCTTCGTTTTGTTCTCTTTCTGTGTTTAGTTGCGTGAAAATCGATGGTAGTGAATTTTTCTTTTCATTTTTCCCATCATTAACGGCCCCGATTTGGATGCGATAATCGTTTTCTGTATGAAAAAAATGATTCCGTAATGTTTTTATTGTTTGGATTTCACGTATAATCTCGATGATCGTTTAGAGGATGGTGTTTTTGCTTCTTTTATTTTTTAGATGGTTCCGACAAACCGGCTTCACTCGTCACAATTTGTAACGTACTTGTAGGATTTAGATTTCCTTAGAATTTAGAAGATGTATTGTGTTCTAAACTGGATTATGTTCTGCGTGCGACGAGCCATGAAATTCTTCAACGCTTGTTGGACATATTCCCGGAGTCTTTACATTTGTATTTGTTGCATTTTGGACGCAGTAAGAGATTGGAAGCTGTAAAACCTGTTAGGAAAAGAACATGAATTTCTTTTATTGAAACGAGAAGCAGAGGTTATGAAATAAATTAAACAGCTGGAAAACAAAGAAGAAGAATGCCTTTTCTATTGATGTCGCCAATGAAGTTGTGATTTAATTGGTGGGACGGAATTCTGGTTTACAATTGAAAAACTTATGAATCCCCTCTTTGGCCTGTCCGATCGTTACCAAAATTAAGGTTCTCGTCATGAATACTGCTCATGAGGGTGAGCCTTAATTTTGGTAACGACCGGACAGGCCAAAGAGGGGATTCGTAGGTTTTTCAAATTCCATCCCACACGTTAAATCACAACTTCATCGGCGACATCAATAGAAAAGTATTCTCATGAATACTGGTCATGAGAGTATAGAACTGAACGCTCTAAATCTCACTACAGTATCTTCTTAGTGGCAGATCCCTATCATGATTTGATAAGTCAAGAATTCTACCCAAATGTTTCTGATTGAAAGATAATAGATATCATTGTGGAAAAAGAATATATCCTGGCAAATGAAAATTCTCTGACCACTGTTTAAACAAACATCACACTACTGGAGAAAGAACTGATGATTTGAGAAATATATGCTTATTAGAATAGTATAAAATAGGACATGGGAAGGATGAAACATATCTCCGTTCACACCTGAAAAGAATAGTAAATAGAACTCCTAATAAGCAATAATAGGATAAAGATCAGAAGCACATTAAGCTGTGTCTATTTAGCATAACTTTACTCATGTAATGAATGTTTATGTTCAAAAAATCTGTTTTCATGGATGTTTTATGTCTACCCATGTTCCTTGCTGTTATCAATAATTGAAGATTGTAACCTAGGAATGTCAGTTAGCATATTGTTGTTTGCCATGAGTTGAGGTAAAGAAGGCACAAGATAATTGGTAAAATGTTGCAATGTTCTATTCACTCATATTGGAAGGATGTTATTAAGAAAACGATTACTAGATACCTGTATCTGATTGAATGAAATTTTAATGATGCGTACCTCTTTGTTACATCGGCGAACAGATATACTGAGTATGTATTAGACAAGTGGTAATCCTTCATCAAGATAATCCTCTTCAACGTCCATTTTATTTTTGTTTTTCCTATGCCTTTTTGTTCTTTTATCTCAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACCAGGCACTGTTTCACTCGTTACATTGAGTTCCACAGGTCCATTTTTCTTACAACTTGGAACGAGAGTTAAAATTGAAAAATGAAAGGGTCTATAGTCTTCTCTGTTTTCATCATTAGTTGTCCCCTTAAGTATGCGGAACTTTCCACAGGTGCCTGACAGCGAAGGGCGAGGAGTCCGGTGAATGCGAGAGATTTGCAAAGTATTATCGTGCCCTTTGCCCCGGTGAATGGGTGAGTTTTGTTCAACGTTTTTTTATCCTATTGATGCAGTTCTGCCAACATTTAGGTGCATGGCCACAAGAATTCTTTTGCCTCTTTCAATATTAGCATTGCTTGATTTTTTTTTATGCAAACTCTCTGGATTTAATCCCAAGTTCCATTCATAAAATTTTCTCTATGAACCAGGAAGAACCGTCTTTGATACCTCTATGCCCTGTGGCGTTAGATTACATGTTTATATTCTTATTGGCTACTGAAGCTATTTTGCCTTGAACTTCATGTATTTTCTATTTCTATCAGGTTAGGCAATAATATTTAAATTTTAGTAGATGTTGAATGATTAAAATCAAAATTGTAAAAGTCTAGGACCACAATTCTAAAAAAATGATAGATCAGATATTTAGGAGCCGAAACTATATCTGAACCACGCCCATGAATATCTGCACCATGATTCTATGGGTTGTTGAGTCTATCAGCCAGCCACCTTTATGAACCTCTGCCTGTTGATGTGCTTAAACCGCATCGTTCCTGCAGGTCGAAAAATGGAATGAGCAGAGAGAGAACGGCACATTCCCCGGCCCTCTTTGAACGAATGTTCATCACCACAGAAAAGCACAGATTGTCAATTTATGTTTGTTCTCAAGTTGTATCAAAAAACTGTTTGGGAGTTCCATTATTTTTCATTGGCTTGATCTATTGTGTATCTCATGTTCTATAAGTAAAGAACATCATTCTGTTGTTTTGAGGAACTGGAAGCATTGTGTTTAATATGGTCAAAAGGTTAAAGACAAAGAGAGGGCCAAGATTGCAGTTTCCCATATGCTTTTGGGGCTTTGTGAATTGGTTTTGAAGCTTTCCATATTATAAACTATCATCAACAGAATTGCATGGAATGAAGAGCTTCTGAATTGAATGAATGTTCGTCCATTTGCTG

mRNA sequence

TTTGTTCAACTTATACTGCGCCTTCGTCCACCTTCCATTGCAGAGTCTTCCGTTTGATCTCCTCACTTTTTTGGAGCTTGAATCGATCAGTCATGGCCGAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACCAGGCACTGTTTCACTCGTTACATTGAGTTCCACAGGTGCCTGACAGCGAAGGGCGAGGAGTCCGGTGAATGCGAGAGATTTGCAAAGTATTATCGTGCCCTTTGCCCCGGTGAATGGGTCGAAAAATGGAATGAGCAGAGAGAGAACGGCACATTCCCCGGCCCTCTTTGAACGAATGTTCATCACCACAGAAAAGCACAGATTGTCAATTTATGTTTGTTCTCAAGTTGTATCAAAAAACTGTTTGGGAGTTCCATTATTTTTCATTGGCTTGATCTATTGTGTATCTCATGTTCTATAAGTAAAGAACATCATTCTGTTGTTTTGAGGAACTGGAAGCATTGTGTTTAATATGGTCAAAAGGTTAAAGACAAAGAGAGGGCCAAGATTGCAGTTTCCCATATGCTTTTGGGGCTTTGTGAATTGGTTTTGAAGCTTTCCATATTATAAACTATCATCAACAGAATTGCATGGAATGAAGAGCTTCTGAATTGAATGAATGTTCGTCCATTTGCTG

Coding sequence (CDS)

ATGGCCGAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACCAGGCACTGTTTCACTCGTTACATTGAGTTCCACAGGTGCCTGACAGCGAAGGGCGAGGAGTCCGGTGAATGCGAGAGATTTGCAAAGTATTATCGTGCCCTTTGCCCCGGTGAATGGGTCGAAAAATGGAATGAGCAGAGAGAGAACGGCACATTCCCCGGCCCTCTTTGA

Homology

[Close]

BLAST of CmoCh05G006900 vs. Swiss-Prot
Match: CX6B2_ARATH (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-39
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC TAKGEES +CERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE+GTFPGPL
Sbjct: 64 KWNEQRESGTFPGPL 78

[Close]

BLAST of CmoCh05G006900 vs. Swiss-Prot
Match: CX6B3_ARATH (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 6.8e-39
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC TAKGE++ ECERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE GTFPGPL
Sbjct: 64 KWNEQRETGTFPGPL 78

[Close]

BLAST of CmoCh05G006900 vs. Swiss-Prot
Match: CX6B1_ARATH (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-34
Identity = 58/75 (77.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
           EI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+ AKG+++ EC++FAK+YR+LCP EWV+
Sbjct: 116 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 175

Query: 63  KWNEQRENGTFPGPL 78
           +WNEQRENGTFPGPL
Sbjct: 176 RWNEQRENGTFPGPL 190

[Close]

BLAST of CmoCh05G006900 vs. Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-21
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 8  TAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVEKWNEQ 67
          T   D RFP TNQT+HCF  YI++ RC+ AKGE+   C++F   Y++LCP EWVE+W+EQ
Sbjct: 17 TVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQ 76

Query: 68 RENGTFPGPL 78
          RENGTFP P+
Sbjct: 77 RENGTFPAPI 86

[Close]

BLAST of CmoCh05G006900 vs. Swiss-Prot
Match: CX6B1_HUMAN (Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-18
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 7  KTAPADFRFPTTNQTRHCFTRYIEFHRC---LTAKGEESGECERFAKYYRALCPGEWVEK 66
          KTAP D RFP  NQTR+C+  Y++FHRC   +TAKG +   CE + + Y++LCP  WV  
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTD 72

Query: 67 WNEQRENGTFPGPL 78
          W+EQR  GTFPG +
Sbjct: 73 WDEQRAEGTFPGKI 86

[Close]

BLAST of CmoCh05G006900 vs. TrEMBL
Match: A0A0A0LH49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G037250 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-39
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          V+KWNEQRENGTFPGPL
Sbjct: 61 VDKWNEQRENGTFPGPL 77

[Close]

BLAST of CmoCh05G006900 vs. TrEMBL
Match: C6T6B8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-39
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLVAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of CmoCh05G006900 vs. TrEMBL
Match: A0A0B2Q8D5_GLYSO (Cytochrome c oxidase subunit 6b-1 OS=Glycine soja GN=glysoja_005732 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-39
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of CmoCh05G006900 vs. TrEMBL
Match: I3SE54_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAP DFRFPTTNQTRHCFTRYIEFHRCL  KGEESGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQR+NGTFPGPL
Sbjct: 61 VEKWNEQRDNGTFPGPL 77

[Close]

BLAST of CmoCh05G006900 vs. TrEMBL
Match: I1MSX7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-38
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MTEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of CmoCh05G006900 vs. TAIR10
Match: AT5G57815.1 (AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-40
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC TAKGEES +CERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE+GTFPGPL
Sbjct: 64 KWNEQRESGTFPGPL 78

[Close]

BLAST of CmoCh05G006900 vs. TAIR10
Match: AT4G28060.1 (AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-40
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC TAKGE++ ECERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE GTFPGPL
Sbjct: 64 KWNEQRETGTFPGPL 78

[Close]

BLAST of CmoCh05G006900 vs. TAIR10
Match: AT1G22450.1 (AT1G22450.1 cytochrome C oxidase 6B)

HSP 1 Score: 146.7 bits (369), Expect = 5.7e-36
Identity = 58/75 (77.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
           EI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+ AKG+++ EC++FAK+YR+LCP EWV+
Sbjct: 116 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 175

Query: 63  KWNEQRENGTFPGPL 78
           +WNEQRENGTFPGPL
Sbjct: 176 RWNEQRENGTFPGPL 190

[Close]

BLAST of CmoCh05G006900 vs. TAIR10
Match: AT1G32710.1 (AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 1


Query: 9   APADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVEK-WNEQ 68
           A  + RFP TN+TRHCF R++++H+C+   G ++ +C     Y R++CP E V K W + 
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKS 118

Query: 69  REN 71
             N
Sbjct: 119 GRN 121

[Close]

BLAST of CmoCh05G006900 vs. NCBI nr
Match: gi|659069910|ref|XP_008452371.1| (PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-39
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          V+KWNEQRENGTFPGPL
Sbjct: 61 VDKWNEQRENGTFPGPL 77

[Close]

BLAST of CmoCh05G006900 vs. NCBI nr
Match: gi|449453930|ref|XP_004144709.1| (PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-39
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          V+KWNEQRENGTFPGPL
Sbjct: 61 VDKWNEQRENGTFPGPL 77

[Close]

BLAST of CmoCh05G006900 vs. NCBI nr
Match: gi|734365156|gb|KHN17535.1| (Cytochrome c oxidase subunit 6b-1 [Glycine soja])

HSP 1 Score: 167.9 bits (424), Expect = 6.8e-39
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of CmoCh05G006900 vs. NCBI nr
Match: gi|255633956|gb|ACU17340.1| (unknown [Glycine max])

HSP 1 Score: 167.9 bits (424), Expect = 6.8e-39
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLVAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of CmoCh05G006900 vs. NCBI nr
Match: gi|388500960|gb|AFK38546.1| (unknown [Lotus japonicus])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-38
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAP DFRFPTTNQTRHCFTRYIEFHRCL  KGEESGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQR+NGTFPGPL
Sbjct: 61 VEKWNEQRDNGTFPGPL 77

The following BLAST results are available for this feature:

BLAST of CmoCh05G006900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CX6B2_ARATH	2.3e-39	93.33	Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1	[more]
CX6B3_ARATH	6.8e-39	92.00	Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2	[more]
CX6B1_ARATH	1.0e-34	77.33	Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1	[more]
COX12_SCHPO	4.9e-21	58.57	Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
CX6B1_HUMAN	2.3e-18	52.70	Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2	[more]

BLAST of CmoCh05G006900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH49_CUCSA	2.1e-39	96.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G037250 PE=4 SV=1	[more]
C6T6B8_SOYBN	4.7e-39	94.81	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0B2Q8D5_GLYSO	4.7e-39	94.81	Cytochrome c oxidase subunit 6b-1 OS=Glycine soja GN=glysoja_005732 PE=4 SV=1	[more]
I3SE54_LOTJA	1.1e-38	93.51	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I1MSX7_SOYBN	1.4e-38	93.51	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of CmoCh05G006900 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57815.1	1.3e-40	93.33	Cytochrome c oxidase, subunit Vib family protein	[more]
AT4G28060.1	3.8e-40	92.00	Cytochrome c oxidase, subunit Vib family protein	[more]
AT1G22450.1	5.7e-36	77.33	cytochrome C oxidase 6B	[more]
AT1G32710.1	1.3e-11	39.68	Cytochrome c oxidase, subunit Vib family protein	[more]

BLAST of CmoCh05G006900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069910\|ref\|XP_008452371.1\|	1.0e-39	97.40	PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis melo]	[more]
gi\|449453930\|ref\|XP_004144709.1\|	3.0e-39	96.10	PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis sativus]	[more]
gi\|734365156\|gb\|KHN17535.1\|	6.8e-39	94.81	Cytochrome c oxidase subunit 6b-1 [Glycine soja]	[more]
gi\|255633956\|gb\|ACU17340.1\|	6.8e-39	94.81	unknown [Glycine max]	[more]
gi\|388500960\|gb\|AFK38546.1\|	1.5e-38	93.51	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003213	Cyt_c_oxidase_su6B

Vocabulary: **Molecular Function**
Term	Definition
GO:0004129	cytochrome-c oxidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G006900.1	CmoCh05G006900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003213	Cytochrome c oxidase, subunit VIb	GENE3D	G3DSA:1.10.10.140		coord: 3..76 score: 1.2
IPR003213	Cytochrome c oxidase, subunit VIb	PIR	PIRSF000278	COX_VIb	coord: 1..77 score: 3.3
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 14..73 score: 3.9
IPR003213	Cytochrome c oxidase, subunit VIb	unknown	SSF47694	Cytochrome c oxidase subunit h	coord: 4..76 score: 7.19
None	No IPR available	PRODOM	PD015172		coord: 10..77 score: 5.0
None	No IPR available	PANTHER	PTHR11387	CYTOCHROME C OXIDASE POLYPEPTIDE VIB	coord: 3..77 score: 5.2
None	No IPR available	PANTHER	PTHR11387:SF15	CYTOCHROME C OXIDASE SUBUNIT 6B-1	coord: 3..77 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G006900	Cucsa.089880	Cucumber (Gy14) v1	cgycmoB0180
CmoCh05G006900	CmaCh05G006580	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G006900	Cla022868	Watermelon (97103) v1	cmowmB764
CmoCh05G006900	Csa2G037250	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G006900	MELO3C004105	Melon (DHL92) v3.5.1	cmomeB725
CmoCh05G006900	ClCG11G012640	Watermelon (Charleston Gray)	cmowcgB696
CmoCh05G006900	CSPI02G05470	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G006900	Lsi11G007130	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G006900	Cp4.1LG11g05870	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G006900	MELO3C004105.2	Melon (DHL92) v3.6.1	cmomedB822
CmoCh05G006900	CsaV3_2G007830	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G006900	Cla97C11G218510	Watermelon (97103) v2	cmowmbB784
CmoCh05G006900	Bhi06G001190	Wax gourd	cmowgoB0927
CmoCh05G006900	CsGy2G005600	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G006900	Carg08347	Silver-seed gourd	carcmoB0087

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None