CsGy2G002630 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G002630
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	TIMELESS-interacting protein
Location	Chr2 : 1741601 .. 1746929 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTCAATTCAACTTAAAAATCTAAACCAAACCGAGTAAGAATCATTTCAAGATTATTTGTTACAATAGTTTTGTGATAATTTAAACTTAGACAACGGATTTGGTATACAATTGTATTTGTGTGATGAGAGGAATATTTTAAATAGTCATTTTGTTTGATTGCATGACCCATAAATATTTTAAAAATTTGTTATATTTTGTATTAGGAGTATATGAGGTAAGAAATCCAAATTTGGAATGGGCAGGGTTAAATGTGGCTTTAAAGAAAAGAAAAGAAAAGATGGGAATGGCGCCAATGTTCGCGCCAAAAACACCAAGAAGATTTTCCCATAGGGTTTATGATGTTTCGTTCATAATCACAAAGATTCACAAAACACTTACTTCAATTTCTCCACACAAAAGTTAATTCCAAATTTCCATATCCCCATCGGATCGGATCCAACATGGAGAAGGACAACAACGCCGTCCCAGCGCCGACGGGATGCTTCAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCTACTTCCAATTCTTCCACACCTTCTTTCTCCTCTCCTCCTGCTGCTCCTTCAAAAGCTGTAGAGAAGCCAAAGAAAGCCCCCAGAACCAGGCCCAAGCTCACTCCTGAGCTACTCCTTTCCGACGATGGTCTAGGTTACGTCCTTCGCCATTTTCCTCGTGCTTTCAAGTATCGTGGCCGTGGACACGAGGTTATCTTCTATTTTTCTTCCCATTCTAACTTAATTAGTTCATTTGTTCCCATCTGGCATATATGAGTTTTGTTTGAGTTATATTTCAACATTGCTGTTCAACAACAAATGGGGTTTCGAAAATAATATAGTAATTACAGTCTGGTGCGTTCTATGGTCTACGTTTTTGTTACGAATTCGAGCATCAAAGGAAACAGTAAACGTAAATGGTAGAATAATCGAAAGGTGGTTCACTAACTATTTTAACATCATCTAAGTGCAGTGGTAGAGATCAACTATATTATCAGAGATAAACGTCGGATTACAGATTATAGAGAGCTTATAAAGTCTATATACAGTGCATTAAACTATTCTAAACCTTAGAGCCAAAATTGTAAATAATATAAATATGAATACAACCAACACCCATAAACCCCAATCTAGGCTTGTAGACCCAGACTTATTGATCGGTTAGCGAGATCCAGTGATTGGTCATTCAAAGCAGCAAGTAAAAAATTAAGACATTGCTGTATAATTAGAAACAATTTTAATGCGCATACATATTTCAATGAAGAATTGTTTGAGAGAGCCCAAGCTTCGTCAGGGGAAATCGGTACTTACCCGTAATGGTTTGTTTATTGGAAATCCGGTTTCAAACTTTTTTCCATTGAATTATAGCCATGTGTATTTCATCAACAATGTGTACGTACATGTATAATTTTTCTTATTACGGTGTCGTTGTCTCATCCATTGTCATTTTCTAATGATTTGATTATTGCACTAATCGAGATATACTTTTGACTGGTGTTTTGCAGATCAATGATTTGGAAAATCTTATTGGATTATACAGGGAATGGCATTCTCATATACTCCCCTATTACTCTTTCGAGCATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTAAAGGTAAAAATGACTGTTTTTTGTTCTTTTACAATGAGCGTATCACAGAGGTGTACATACATGGCTTCAAAATACATAAGTTTAGCCTAATAGCATACTGTGATACTAGTATTGATAGAATTTGATCTAAAGGAACTGCTCTTAAGAAACCCAGTGCATCTGAAGGGAGTAGAGACAGAGAGTGTGAACTCCGTAATATTTTAACTGAATCCTTATTTTTTAAATCAGATCAACACGGAGCAAGTTTGTTTATTAAATGATATCTAATTTGTAATGAATTGGCGTTCTTACTAAAAAGACATTTTGATCAGATGTGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGTGAGGCACCAATTTTAAATGATGATGATGATGATGTCAACAATGAAAAAGGTACCTTCTAGTATTCTCATTTATTAGAAGACACATATATTTTCATCCTATTTGGTCAAATTGTGTTTGTGTTTAGTAAGTTAATCATTGCCCTCTCATTCTGTTTAAAAAAATTAAATATGGTTTAGATAAATTTGAAGTCGACTGAACTGCCAATATAATGAAGCAAGCAACAATTACTATCGTTGTTTTTCATGTCCCACTCCCACCAGACAGCTCCATATAAAATTGTCGTTCTCAGATTTGCGTTGGTAGAACGATGTTGGCTTGGGCTCAATCTATCTGAGTGTATTTAAGGGGCTGGTTGGTATCAATAAGCTTAATTATGATGGAGAACACACCCTCTGGTGAGGAGTTGTATGTGGCTTTTGTTTTTCATTAGCCATTACTTATCTTCATCTTCCGTCAATATATTGCCTCCGTCGAACTTCTCATCTTTCTTAGGCATTGGTATCCAAATCTTTTTTCCGTTGAGTCACATTTTACTAGATTGGGGCTTATTATAGTTGGCCCTTCTTGACGTGGACTTCTCCGTTTTGTTTGTCTATGTATACTTTCTTACTTTCATTCTAAGAAGCACAGACACGAGATACGAAAACGACATGATACAGACACGACGGCACACCATATTTTAAAAATCTAGGACACGACACAGCAAGGACACGTTTATTAAAATATCATATTAAAAGTATATATATCATTTTTATAGTAAAAGAAAATTCATAGTAAATGAATTGATGCATTTATATGTTTAAAAGACTTAGCATGATGTATCTCATGTCCAAAAATTATTATTATTGTCATATATGTGTCTTTTTAGCCTACTCAATGAGTGTTCTATGCATATCTAATACATTTGTTGCACTAACAAGTGTCCGAAAGGTGTCCGCCAAGTGTCAAAGTGCCTAAGTGTCCGACACGGTTACACTATCCAAACTGAAGTGTCCGACACGGTTACACTATCCAAACTGAAGTGTCCATGCTTCTTAGCTTTCATTTCTTCTTAGCTTTCATTTCTTGTCAATGAAAGTTAAGTTTTTTAATTTAAAATGTCGTGGATACATCGGGAAAGTGGAAAAACTTCACAATCTTTTTAAGATACATAAGTTACCATCTCATTCATAATTGATTTTGAGATGGAATGAAAAGGAACTTCTCATCTTCCTCTATTCATTCATACGCTTGGGAATTTTGATAACAATATAAACCTTTGCCAACTGGGGCTTAGTTCGAAATACCCTCTAACCCTTTGGCATCTGGATGCCCACTTTAGTATGCACTAAGCAGTTGGTGCTTGGGATGGGTATATTGTATCAGAATGTTGTCAGTAATTAATAGTTATGTTGGATTCATAATTTTCTTTGTACTTTGTGGTATGGTATGATGCTGGCTGTGTGGTTAGAAATGTAACTTAGGAATTTAAATTCATCTACTTGAGTATTTTCTAATTTCTCATGTGTGAAACAATTCTCTGATGTGATGATTGGAAAAGATTTTTAGATCCTGAGGCTAATCATTATTTGATTACCCCTCTGCTTGAAATTTAAACCCGTCTGCCAATCCTTGCAGAAGCCAAGGATCCGGATGATGTATTCGATAATCAGGAAGAGGCGTCTTTGAGGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGTAAGTCTTTCTTTGTTCATTTCTTTTTCTTCTGAACAATTGGTTGGTTTCCATCCCTACCATTGTTTTAGTTTCAATCATATTCTTACTAAGAAAAGCGTCGTAATTACTGAATTGAACGAAGAAATTTTACCACGAGTCATAAATGTAGATTTCCGGAATATTCATAGTGAAGCAAACTATGTTTCTTGAGCCCTTTACTTGGCAGACCAATTTTCCAGATGAAATTGTCAGGTCGTTTATCAAAAAATATATATGTTACTGCACCCCCCCCCCATTAACTAAAATTTGCGCTTAAAGCTTATTTTTATCAGGTCTATAATTTCTTTTGTTAGGGATAAAACCAATTTATATCCCTAAAATGTTGTACTCTTATAACTCCAAACTAATAATTCTGTAAGTTTAAACCCCAACTTTCAAATCAATTTAGATGAATTGTTAGTGATTTATAGCTACTTTCACTCAATTCCAATATAAGATCAAAACCACATAAATATAATTATTCTTCTCCCAAGTCCCATCGCACCTAAGTAGCAAGAAAACTTGTCATGTGACTCTTTCCAATTAAGTAAAGAAAAATAGAGCGAGTCTAGAAGATGAAATCATTCAAAGTTCCTGAAAATAGCACCGCCATTTATTACCTTACTGCATTTCTCTCATTTACATCTGTCCTTGTATATGGAGAAGCTTCATTCATAGGTGAAAGTTATGAAGTGTGATACAAGTACGAAGAAGTTTTATACACGGGTGAAAGCTATGCATTAAACGGTTTTCACCTAAGCTCTTTGGGCAAAACCCTTGTGCATATACTAACGATATCTATCGATGGAACCTTCCACTGGATGAGAAACTTGAAGCAAGAATACCTCCATTATATTATCTAGCATTTGTATAATCTCTAACTAGAGATTGCTTGTTTTTTTTATGACAAACATTGGAAATTATAGGATTGCCCAGAAGATTACATAAAACAATTCCAATATGACCTAAGAGAACTCAAATTTGTTGAAACCCAACACCATTTCCTGACGTATTACCCGACGATCTACAACTGATTGCTGATTTTATTTACATGGTTGTAGGAACCGTTGCAGAATGAACAAAGTGATTCCTTAACCATTGGTGGAACTATGGAAGGTGTGGCCAACCAAGAACCCAACCAAGAACCAAAGACTAGCAATTCAAGTGAAACAAGTGAGCTCACAGAGGAACAGAGAGTTCGAATGGAAGCAAACAGGTTGAAGGCCTTAGAAAGAGCTGCAGCCAAGGCCCGCTCGTTGCCTACTGTTTAGATAAACATTCAAAGTGATGGTTTTTGGCTTGGAAAGGTTCAACCACCTTAGGGAGTTTCTTCCTTAAACCTCCAATTTTTTCCCTAAATTTCGACGAATGAGTCCTTGGAATGTCAATTCGGAATTTTAGATGCTCATTTTGAAAGGTTTATATTAAATTGTTAATCATATGAGCCTGCATTGTAAATTAATAATTTTAAGTTTATAAATCATTTTCTTTTGTATGTTTCTTCTTATCCATGCACTAATCTTAAATTTAATCTCCCCTATGGTTGAT

mRNA sequence

AATCTCAATTCAACTTAAAAATCTAAACCAAACCGAGTAAGAATCATTTCAAGATTATTTGTTACAATAGTTTTGTGATAATTTAAACTTAGACAACGGATTTGGTATACAATTGTATTTGTGTGATGAGAGGAATATTTTAAATAGTCATTTTGTTTGATTGCATGACCCATAAATATTTTAAAAATTTGTTATATTTTGTATTAGGAGTATATGAGGTAAGAAATCCAAATTTGGAATGGGCAGGGTTAAATGTGGCTTTAAAGAAAAGAAAAGAAAAGATGGGAATGGCGCCAATGTTCGCGCCAAAAACACCAAGAAGATTTTCCCATAGGGTTTATGATGTTTCGTTCATAATCACAAAGATTCACAAAACACTTACTTCAATTTCTCCACACAAAAGTTAATTCCAAATTTCCATATCCCCATCGGATCGGATCCAACATGGAGAAGGACAACAACGCCGTCCCAGCGCCGACGGGATGCTTCAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCTACTTCCAATTCTTCCACACCTTCTTTCTCCTCTCCTCCTGCTGCTCCTTCAAAAGCTGTAGAGAAGCCAAAGAAAGCCCCCAGAACCAGGCCCAAGCTCACTCCTGAGCTACTCCTTTCCGACGATGGTCTAGGTTACGTCCTTCGCCATTTTCCTCGTGCTTTCAAGTATCGTGGCCGTGGACACGAGATCAATGATTTGGAAAATCTTATTGGATTATACAGGGAATGGCATTCTCATATACTCCCCTATTACTCTTTCGAGCATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTAAAGATGTGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGTGAGGCACCAATTTTAAATGATGATGATGATGATGTCAACAATGAAAAAGAAGCCAAGGATCCGGATGATGTATTCGATAATCAGGAAGAGGCGTCTTTGAGGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAACCGTTGCAGAATGAACAAAGTGATTCCTTAACCATTGGTGGAACTATGGAAGGTGTGGCCAACCAAGAACCCAACCAAGAACCAAAGACTAGCAATTCAAGTGAAACAAGTGAGCTCACAGAGGAACAGAGAGTTCGAATGGAAGCAAACAGGTTGAAGGCCTTAGAAAGAGCTGCAGCCAAGGCCCGCTCGTTGCCTACTGTTTAGATAAACATTCAAAGTGATGGTTTTTGGCTTGGAAAGGTTCAACCACCTTAGGGAGTTTCTTCCTTAAACCTCCAATTTTTTCCCTAAATTTCGACGAATGAGTCCTTGGAATGTCAATTCGGAATTTTAGATGCTCATTTTGAAAGGTTTATATTAAATTGTTAATCATATGAGCCTGCATTGTAAATTAATAATTTTAAGTTTATAAATCATTTTCTTTTGTATGTTTCTTCTTATCCATGCACTAATCTTAAATTTAATCTCCCCTATGGTTGAT

Coding sequence (CDS)

ATGGAGAAGGACAACAACGCCGTCCCAGCGCCGACGGGATGCTTCAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCTACTTCCAATTCTTCCACACCTTCTTTCTCCTCTCCTCCTGCTGCTCCTTCAAAAGCTGTAGAGAAGCCAAAGAAAGCCCCCAGAACCAGGCCCAAGCTCACTCCTGAGCTACTCCTTTCCGACGATGGTCTAGGTTACGTCCTTCGCCATTTTCCTCGTGCTTTCAAGTATCGTGGCCGTGGACACGAGATCAATGATTTGGAAAATCTTATTGGATTATACAGGGAATGGCATTCTCATATACTCCCCTATTACTCTTTCGAGCATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTAAAGATGTGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGTGAGGCACCAATTTTAAATGATGATGATGATGATGTCAACAATGAAAAAGAAGCCAAGGATCCGGATGATGTATTCGATAATCAGGAAGAGGCGTCTTTGAGGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAACCGTTGCAGAATGAACAAAGTGATTCCTTAACCATTGGTGGAACTATGGAAGGTGTGGCCAACCAAGAACCCAACCAAGAACCAAAGACTAGCAATTCAAGTGAAACAAGTGAGCTCACAGAGGAACAGAGAGTTCGAATGGAAGCAAACAGGTTGAAGGCCTTAGAAAGAGCTGCAGCCAAGGCCCGCTCGTTGCCTACTGTTTAG

Protein sequence

MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSAPNPNPTSNSSTPSFSSPPAAPSKAVEKPKKAPRTRPKLTPELLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDDVNNEKEAKDPDDVFDNQEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTIGGTMEGVANQEPNQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPTV

Homology

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BLAST of CsGy2G002630 vs. NCBI nr
Match: XP_004139395.1 (PREDICTED: TIMELESS-interacting protein [Cucumis sativus] >KGN60764.1 hypothetical protein Csa_2G009510 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 2.2e-75
Identity = 247/284 (86.97%), Postives = 247/284 (86.97%), Query Frame = 0


Query: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120
           XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY
Sbjct: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDXXXXXXXXXXXXX 180
           YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDXXXXXXXXXXXXX
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNEQSDSLTIGGTXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX          QNEQSDSLTIGGT         
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEKATEEPLQNEQSDSLTIGGT----MEGVA 240

Query: 241 XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLPTV 285
                             QRVRMEANRLKALERAAAKARSLPTV
Sbjct: 241 NQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPTV 280

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BLAST of CsGy2G002630 vs. NCBI nr
Match: XP_022946681.1 (TIMELESS-interacting protein [Cucurbita moschata])

HSP 1 Score: 250.8 bits (639), Expect = 5.7e-63
Identity = 174/284 (61.27%), Postives = 181/284 (63.73%), Query Frame = 0


Query: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+KDN AV APTGC+KCGKPGHWSRDCPSS      XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSS----APXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120
           XXXX         LLS+DGLGYVLRHFPRAFKYRGRGHEI+DLENLIGLYREWHSHILPY
Sbjct: 61  XXXXVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND-XXXXXXXXXXXX 180
           Y FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+ND             
Sbjct: 121 YPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKD 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNEQSDSLTIGGTXXXXXXXX 240
                                                   N QSDS TIG T        
Sbjct: 181 SEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGET----MEGV 240

Query: 241 XXXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLPT 284
                              QR RMEANRLKALERAAAKARS PT
Sbjct: 241 VNQEEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276

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BLAST of CsGy2G002630 vs. NCBI nr
Match: XP_022999094.1 (TIMELESS-interacting protein [Cucurbita maxima])

HSP 1 Score: 250.8 bits (639), Expect = 5.7e-63
Identity = 165/284 (58.10%), Postives = 172/284 (60.56%), Query Frame = 0


Query: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+KDN AV APTGC+KCGKPGHWSRDCPSS                    XXXXXXXXXX
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSS----APNPNFSRPPSSSAPAXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120
           XXXXXXXXX    LLS+DGLGYVLRHFPRAFKYRGRGHEI+DLENLIGLYREWHSHILPY
Sbjct: 61  XXXXXXXXXTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND-XXXXXXXXXXXX 180
           Y FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+ND             
Sbjct: 121 YPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKD 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNEQSDSLTIGGTXXXXXXXX 240
                                                   N QSDS TIG T        
Sbjct: 181 SEGLFDNQEEASLKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGET----VEGV 240

Query: 241 XXXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLPT 284
                              QR RMEANRLKALERAAAKARS PT
Sbjct: 241 VNQEEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276

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BLAST of CsGy2G002630 vs. NCBI nr
Match: XP_008456510.1 (PREDICTED: TIMELESS-interacting protein [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 1.3e-62
Identity = 191/284 (67.25%), Postives = 196/284 (69.01%), Query Frame = 0


Query: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+KDNNA+ APTGC+KCGKPGHWSRDCPSS                            XX
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSSAPAAPSKAVEKXX 60

Query: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120
           XXXXXXXX     LLS+DGLGYVLRHFPRAFKYRGRGHEI+DLENLIGLYREWHSHILPY
Sbjct: 61  XXXXXXXXLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDXXXXXXXXXXXXX 180
           YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND             
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND-DDDVNNEKEAKD 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNEQSDSLTIGGTXXXXXXXXX 240
                                      XXXXXXXXXXX             XXXXXXXXX
Sbjct: 181 PEGVFDNPEEASLRNNGADDIEEDMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLPTV 285
           XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSL TV
Sbjct: 241 XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLATV 283

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BLAST of CsGy2G002630 vs. NCBI nr
Match: XP_023545691.1 (TIMELESS-interacting protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 4.8e-62
Identity = 182/285 (63.86%), Postives = 189/285 (66.32%), Query Frame = 0


Query: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+KDN AV APTGC+KCGKPGHWSRDCPSS       XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSS----APNXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120
           XXXXX        LLS+DGLGYVLRHFPRAFKYRGRGHEI+DLENLIGLYREWHSHILPY
Sbjct: 61  XXXXXRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DXXXXXXXXXXX 180
           Y FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+N   XXXXXXXXX  
Sbjct: 121 YPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNXXXXXXXXXXXXAK 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNEQSDSLTIGGTXXXXXXX 240
                                                    N QSDS TIG T       
Sbjct: 181 DSEGLFDNQEEASLKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGET----VEG 240

Query: 241 XXXXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLPT 284
                               QR RMEANRLKALERAAAKARS PT
Sbjct: 241 VVNQEEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 277

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BLAST of CsGy2G002630 vs. TAIR10
Match: AT3G02820.1 (zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 168.7 bits (426), Expect = 5.2e-42
Identity = 85/163 (52.15%), Postives = 98/163 (60.12%), Query Frame = 0


Query: 10  APTGCFKCGKPGHWSRDCP-----------SSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 69
           APTGCFKCG+PGHWSRDCP           SS                            
Sbjct: 4   APTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKSGTSIAPAPK 63

Query: 70  XXXXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHIL 129
                          LLS+DGLGYVLR+FP++FKYRGRG E++DL NLI LY EWH+H+L
Sbjct: 64  VTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRGKEVSDLGNLIRLYSEWHTHLL 123

Query: 130 PYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWRE 162
           PYYSF+HFVHKV+QVA+TKRVK C+ ELRERVA G DP K  E
Sbjct: 124 PYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVDPNKLYE 166

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BLAST of CsGy2G002630 vs. Swiss-Prot
Match: sp|Q9BVW5|TIPIN_HUMAN (TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 74  LLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPYYSFEHFVHKVEQV 133
           L+S+ GL   LRH     K++G+GHE  DL+ LI     W   + P   FE F+ +VE +
Sbjct: 72  LISERGLP-ALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYL 131

Query: 134 AATKRVKMCLGELR 148
            + K V+ CL  +R
Sbjct: 132 GSKKEVQTCLKRIR 144

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BLAST of CsGy2G002630 vs. Swiss-Prot
Match: sp|Q3ZCC4|TIPIN_BOVIN (TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-06
Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 74  LLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPYYSFEHFVHKVEQV 133
           L+S+ GL   LRH     K++G+GHE  DL+ LI     W   + P   FE F+ +VE +
Sbjct: 72  LISERGLP-ALRHVFEKAKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVECL 131

Query: 134 AATKRVKMCLGELR 148
              K V+ CL  +R
Sbjct: 132 GNKKEVQTCLKRIR 144

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BLAST of CsGy2G002630 vs. Swiss-Prot
Match: sp|Q91WA1|TIPIN_MOUSE (TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 3.4e-06
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 74  LLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPYYSFEHFVHKVEQV 133
           L S+ GL   LRH     K++G+GHE  DL+ LI     W   + P   FE F+ +VE +
Sbjct: 69  LTSERGLP-ALRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVENL 128

Query: 134 AATKRVKMCLGELR 148
              K V+ CL  +R
Sbjct: 129 GNKKEVQTCLKRIR 141

[Close]

BLAST of CsGy2G002630 vs. Swiss-Prot
Match: sp|Q4QR88|TIPIN_RAT (TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.4e-06
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 74  LLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPYYSFEHFVHKVEQV 133
           L S+ GL   LRH     K++G+GHE  DL+ LI     W   + P   FE F+ +VE +
Sbjct: 69  LTSERGLP-ALRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVENL 128

Query: 134 AATKRVKMCLGELR 148
              K V+ CL  +R
Sbjct: 129 GNKKEVQTCLKRIR 141

[Close]

BLAST of CsGy2G002630 vs. Swiss-Prot
Match: sp|Q5F416|TIPIN_CHICK (TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.7e-06
Identity = 26/74 (35.14%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 74  LLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPYYSFEHFVHKVEQV 133
           L+S+ GL   LRH     K++G+GHE  DL+ L+     W   + P   F+ F+ +VE +
Sbjct: 79  LVSERGLP-ALRHMFDNVKFKGKGHEAEDLKTLLRHMEHWAHRLFPKLQFDDFIDRVESL 138

Query: 134 AATKRVKMCLGELR 148
              K V+ CL  +R
Sbjct: 139 GNKKEVQTCLKRIR 151

[Close]

BLAST of CsGy2G002630 vs. TrEMBL
Match: tr|A0A0A0LI96|A0A0A0LI96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 247/284 (86.97%), Postives = 247/284 (86.97%), Query Frame = 0


Query: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120
           XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY
Sbjct: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDXXXXXXXXXXXXX 180
           YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDXXXXXXXXXXXXX
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNEQSDSLTIGGTXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX          QNEQSDSLTIGGT         
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEKATEEPLQNEQSDSLTIGGT----MEGVA 240

Query: 241 XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLPTV 285
                             QRVRMEANRLKALERAAAKARSLPTV
Sbjct: 241 NQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPTV 280

[Close]

BLAST of CsGy2G002630 vs. TrEMBL
Match: tr|A0A1S3C4P4|A0A1S3C4P4_CUCME (TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.4e-63
Identity = 191/284 (67.25%), Postives = 196/284 (69.01%), Query Frame = 0


Query: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+KDNNA+ APTGC+KCGKPGHWSRDCPSS                            XX
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSSAPAAPSKAVEKXX 60

Query: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120
           XXXXXXXX     LLS+DGLGYVLRHFPRAFKYRGRGHEI+DLENLIGLYREWHSHILPY
Sbjct: 61  XXXXXXXXLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDXXXXXXXXXXXXX 180
           YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND             
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND-DDDVNNEKEAKD 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNEQSDSLTIGGTXXXXXXXXX 240
                                      XXXXXXXXXXX             XXXXXXXXX
Sbjct: 181 PEGVFDNPEEASLRNNGADDIEEDMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLPTV 285
           XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSL TV
Sbjct: 241 XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLATV 283

[Close]

BLAST of CsGy2G002630 vs. TrEMBL
Match: tr|A0A2I4GAL6|A0A2I4GAL6_9ROSI (TIMELESS-interacting protein isoform X2 OS=Juglans regia OX=51240 GN=LOC109006188 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.0e-47
Identity = 97/169 (57.40%), Postives = 108/169 (63.91%), Query Frame = 0


Query: 4   DNNAVPAPTGCFKCGKPGHWSRDCPSS-----XXXXXXXXXXXXXXXXXXXXXXXXXXXX 63
           +N    APTGC+KCG+PGHWSRDCPSS                                 
Sbjct: 2   ENGKGAAPTGCYKCGRPGHWSRDCPSSTSSSAFVSAPNPDLDSTRSSPPKSTAALAKSSQ 61

Query: 64  XXXXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHIL 123
                          LLSDDGLGYVLRHFPRAFKYRGRGHE++DL NLIGLY EWHSH+L
Sbjct: 62  KAVKSRSRPKLTPDLLLSDDGLGYVLRHFPRAFKYRGRGHEVSDLGNLIGLYSEWHSHLL 121

Query: 124 PYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND 168
           PYYSF+ F+HKVEQVAATKRVKMCL ELRERV +GGDPTK +E P+  D
Sbjct: 122 PYYSFDQFIHKVEQVAATKRVKMCLRELRERVGKGGDPTKLQEPPVQYD 170

[Close]

BLAST of CsGy2G002630 vs. TrEMBL
Match: tr|A0A2I4GAM4|A0A2I4GAM4_9ROSI (TIMELESS-interacting protein isoform X1 OS=Juglans regia OX=51240 GN=LOC109006188 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.0e-47
Identity = 97/169 (57.40%), Postives = 108/169 (63.91%), Query Frame = 0


Query: 4   DNNAVPAPTGCFKCGKPGHWSRDCPSS-----XXXXXXXXXXXXXXXXXXXXXXXXXXXX 63
           +N    APTGC+KCG+PGHWSRDCPSS                                 
Sbjct: 2   ENGKGAAPTGCYKCGRPGHWSRDCPSSTSSSAFVSAPNPDLDSTRSSPPKSTAALAKSSQ 61

Query: 64  XXXXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHIL 123
                          LLSDDGLGYVLRHFPRAFKYRGRGHE++DL NLIGLY EWHSH+L
Sbjct: 62  KAVKSRSRPKLTPDLLLSDDGLGYVLRHFPRAFKYRGRGHEVSDLGNLIGLYSEWHSHLL 121

Query: 124 PYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND 168
           PYYSF+ F+HKVEQVAATKRVKMCL ELRERV +GGDPTK +E P+  D
Sbjct: 122 PYYSFDQFIHKVEQVAATKRVKMCLRELRERVGKGGDPTKLQEPPVQYD 170

[Close]

BLAST of CsGy2G002630 vs. TrEMBL
Match: tr|A0A2N9J0M3|A0A2N9J0M3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47793 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 99/174 (56.90%), Postives = 107/174 (61.49%), Query Frame = 0


Query: 4   DNNAVPAPTGCFKCGKPGHWSRDCPSS----------XXXXXXXXXXXXXXXXXXXXXXX 63
           +N    APTGC+KCG+PGHWSRDCPSS                                 
Sbjct: 2   ENEKAAAPTGCYKCGRPGHWSRDCPSSPGTASASAPIPNSKPNPESTRYSSFKTTSSSVA 61

Query: 64  XXXXXXXXXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREW 123
                               LLSDDGLGYVLRHFPRAFKYRGRGHE +DL NLIGLY EW
Sbjct: 62  KSSEKQKKAPRTRPKLTPDLLLSDDGLGYVLRHFPRAFKYRGRGHEASDLGNLIGLYSEW 121

Query: 124 HSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND 168
           HS +LPYYSF+ FVHK EQVAATKRVKMCL ELRERVA GGDPTK RE P++ND
Sbjct: 122 HSRLLPYYSFDQFVHKTEQVAATKRVKMCLRELRERVANGGDPTKLRE-PLVND 174

The following BLAST results are available for this feature:

BLAST of CsGy2G002630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139395.1	2.2e-75	86.97	PREDICTED: TIMELESS-interacting protein [Cucumis sativus] >KGN60764.1 hypothetic...	[more]
XP_022946681.1	5.7e-63	61.27	TIMELESS-interacting protein [Cucurbita moschata]	[more]
XP_022999094.1	5.7e-63	58.10	TIMELESS-interacting protein [Cucurbita maxima]	[more]
XP_008456510.1	1.3e-62	67.25	PREDICTED: TIMELESS-interacting protein [Cucumis melo]	[more]
XP_023545691.1	4.8e-62	63.86	TIMELESS-interacting protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy2G002630 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02820.1	5.2e-42	52.15	zinc knuckle (CCHC-type) family protein	[more]

BLAST of CsGy2G002630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9BVW5\|TIPIN_HUMAN	1.5e-06	37.84	TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2	[more]
sp\|Q3ZCC4\|TIPIN_BOVIN	2.0e-06	37.84	TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1	[more]
sp\|Q91WA1\|TIPIN_MOUSE	3.4e-06	37.84	TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2	[more]
sp\|Q4QR88\|TIPIN_RAT	3.4e-06	37.84	TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1	[more]
sp\|Q5F416\|TIPIN_CHICK	5.7e-06	35.14	TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1	[more]

BLAST of CsGy2G002630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LI96\|A0A0A0LI96_CUCSA	1.5e-75	86.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 PE=4 SV=1	[more]
tr\|A0A1S3C4P4\|A0A1S3C4P4_CUCME	8.4e-63	67.25	TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=4 SV=1	[more]
tr\|A0A2I4GAL6\|A0A2I4GAL6_9ROSI	5.0e-47	57.40	TIMELESS-interacting protein isoform X2 OS=Juglans regia OX=51240 GN=LOC10900618...	[more]
tr\|A0A2I4GAM4\|A0A2I4GAM4_9ROSI	5.0e-47	57.40	TIMELESS-interacting protein isoform X1 OS=Juglans regia OX=51240 GN=LOC10900618...	[more]
tr\|A0A2N9J0M3\|A0A2N9J0M3_FAGSY	1.6e-45	56.90	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47793 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007049	cell cycle
GO:0006974	cellular response to DNA damage stimulus
GO:0048478	replication fork protection

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR012923	Csm3
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0048478	replication fork protection
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G002630.1	CsGy2G002630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 13..29 e-value: 9.6E-7 score: 38.4
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 13..29 e-value: 2.6E-8 score: 33.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 14..29 score: 11.4
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 11..70 e-value: 1.8E-9 score: 39.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..284
None	No IPR available	PANTHER	PTHR13220	TIMELESS INTERACTING-RELATED	coord: 18..280
IPR012923	Chromosome segregation in meiosis protein 3	PFAM	PF07962	Swi3	coord: 68..149 e-value: 4.0E-22 score: 77.9
IPR012923	Chromosome segregation in meiosis protein 3	PRODOM	PD089639		coord: 66..151 e-value: 9.0E-37 score: 386.0
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 7..33

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G002630	Cla013615	Watermelon (97103) v1	cgybwmB140
CsGy2G002630	Csa2G009510	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G002630	MELO3C004425	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G002630	ClCG02G017080	Watermelon (Charleston Gray)	cgybwcgB119
CsGy2G002630	CSPI02G02530	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G002630	CmaCh05G012330	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G002630	CmoCh05G012590	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G002630	Lsi11G004040	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G002630	Cp4.1LG11g10150	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G002630	MELO3C004425.2	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G002630	CsaV3_2G003690	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G002630	Cla97C02G042780	Watermelon (97103) v2	cgybwmbB114
CsGy2G002630	Bhi06G001544	Wax gourd	cgybwgoB130
CsGy2G002630	Carg23009	Silver-seed gourd	carcgybB1053

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G002630	Silver-seed gourd	carcgybB0269
CsGy2G002630	Wax gourd	cgybwgoB133
CsGy2G002630	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G002630	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G002630	Cucurbita pepo (Zucchini)	cgybcpeB262
CsGy2G002630	Cucurbita pepo (Zucchini)	cgybcpeB271