Carg23009 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23009
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	TIMELESS-interacting protein
Location	Cucurbita_argyrosperma_scaffold_127 : 215091 .. 218421 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAATCTTTCCCCGCCGAGTGAAGTTTGCGAATAGCGAGAGGGATCGAACATGGATAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGTCCGTCCTCTGCTCCAAATCCCAATTCTTCGAGACCTCCTTCCTCTTCTGCTCCTGCTGCCCCTTCAAAAGTTGCAGAGAAGCCCAAAAAGGCTCCCAGAGTCAGGCCCAAGCTCACACCCGAGCTACTCCTTTCCGAGGATGGTCTAGGTTATGTCCTTCGCCATTTTCCTCGCGCTTTCAAGTATCGCGGCCGTGGACACGAGGTTATCTTCTTTATTATTTGGTTCCATTCCTATCCTTCCTACTATTATGTAATTGGTCGATTTGTTCTGATATGGTATATACGAGTTGTTTATCGAGACATCTCCACAAGAAATACTAATTTCTAGAGTGTGGCGTGTTTTCGTATCATCTTAGATATGAACATGGTTAGTGTAGGAAATTATGAGGTGTTTTGGTTAGTTAATGGCTCCCTGAGGTTTTAGGTCTTTGTGTTGATGCATCATTAGAAACAAAGTTGAATGCCAATAATGTTTTCTTTTGAAGAACTGCCATCAGCGGCAATCGGGATTTACCTGAATAGTTTGTTTATTGGGCGCTACTTAACGTACAACCAGATTGCAAATCCTTTTCCATTGAAATTCAGCTGTATATATCTTTCATCTTCTAATGATTTGATTCTTATAATGACTGAATTATACTTTTGATTGTTGTTTTGTAGATCAGTGATTTGGAAAACTTGATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACCCTTTCGAGCATTTTGTACATAAGGTTGAACAAGTAGCTGCTACGAAACGGGTTAAGGTAAAAATGTGCATGAACCCTGAATTTATATGTTCTTTTATGATGAAGGCATCGCAGAGGTGTAGATATATATAGCTAGCTGGATTGGTATGGGTGTCAAAGTACAGAAGTTTGGCCTATTAACATACTAATATAGTTGCCATTTGAACTAAATGAACTGCTCTTAAGAAACCCATTGAATCAATAATGAGCAACTTTGTTGGTTATATGATATCTATTTTGCAATGAATTGGTGTTCTTTCTAAAAAGTCATATTTTGAGCAGATGTGTCTTGGAGAACTAAGAGAGAAAGTTGCCAGGGGAGGAGATCCTACAAAGTGGCGCGAATCACCCATTGTAAATGATGCTGATGATGATATCAATAATGAAAACGGTAGTTTCTAGTGTTCTCCTTTATTGAAAGACACTCACTATCAGTATTTTTATCATCTGTTTGGTTATAATAGAATGTATGTTATCTAATTGTGTTCGTGTTTAGTAAGATAAGTACTGTCCTCTAACTCTATTTAAAAGTTCAACATTGGTTCAGATGATAAATTTGAAGTTAATCGAACTTCCAAAACAAGGAAGCAAGAAACAATTATTAAAGAAAAAAGCGGTTGAAATCGAACATGATGCATTAGTTTATTGGTGTTCTATACTGATTTCTAGAGTAAGGTATCATGTAATTTCTCGAAAAGAAGCCATGTCTATAGCTATGAACATTGAACAACACGAATGAAAGATATACTAGTTCTATCATCGGTTTTTTATGGCCACCCAAGACAAGAGTTCCTTGAAAACATCCAATATTCCTTATAAGGGCGTGGAAACCTCTCCCTAGTACCTAGTAGACGTGTTTTAAAAAATCTTGAAAGGAAGTCCGAAAGGAAAATCCCAAAGATGACAGATGACAATATATACCAGCCGTAGGTTTGGGCCGTTACAAAATAAAACCTAGAAAGTTAGAACCCATCCATTGTAGTAATATGTTCTTATGTTCTGAACTATACTCTTGAAATAATGATCGGGAAAAAAAAGATTCTAAAACTAATCATTATTTGAGTACCCCTTGTCTTGAACTTCAACTCGTCTGTCAATGCTTGCAGAAGCCAAAGACTCGGAGGGCTTATTCGATAATCAGGAAGAGGCTTCTTTCAAGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGTAAGTCTCTCTCTCTTCATTTTTTTTCTTGAACACTTGGTTGCTTTCCATCTTTACGATTGAGTTAGTTTTGATCGTACCGTTTCTTACTGAGAAAACCCTCCCAGATATTGAATTGAATGAAGAAACTTTACCATGAACCGTAAATGTAGATTTCAGGAATAGTAGTAATGAATCAAACTATGTTTTCAGTCATTGTCAGTGCTGATTATTAAAAATCTACATGTTAATGACCCAATTACTTATAATTTGCACTTAAAACTTATTTTATTAGGTGCGCCCTTTCTAATTATTGCACAAGTTAATGTATCTTCATATTTGGTCATAGAATAGTCACCTACTGGCTGGAAAAGAAACGCCATGAAAGTTTAACGTGTATCTCTGTGATATTTTGGGGAGGAGAACGAAACATTTTTTTATAAAGGTATAGAAATTTCTCCCTTGTAGACATGTTTTAAAAATCTTGAGAGAAGCTCAAAAGGTAAAATCTAAAAAGAACAATATTTGCTAGCAGTAGGCTTGAGCGTTACATAATGTCTCTAGGTTCAAAGTACTTTCTTTAAATATGATGAAAAACAATATCTTAGGTCAAAACCCGTGGCTGCATATTGGTATTTGAATCGAACCCTCCACTTGATGAGAAACTTCAATCAAGAATACCTCCATTCCTGTTCTTTCTAACTCGAGTTAACGATCTACAACATTTGATGATGGGTTTTATGTACATGATTGTAGGAGGAGCCATTGATGAATTTGCAAAGTGATTCCTTCACCATTGGGGAAACTATGGAAGGTGTTGTCAACCAAGAACCAAACACTAGCAATTCAAATGAAACTCTGCTCACAGAACAACAGAGAGCTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAACGAGCTGCAGCCAAGGCCCGCTCATCGCCAACTGCCTGATTCATGTGCTTGCTTTGTGTAGATTAACTTTGATTGCAAAGCCAAATTACGATCAATGTGTGTGTCTTAGGAACCCGAGTTCAAGAAGGTTCAGAAGTTTACTGAGTTTACACTTATCAAATCGGTTCCTATTTCAATTCGTGTGCTTGAAAATTCGACTTTATCGCACTCAATAACGGGAAACTCAAGAAAAATTATTAAACAACTGTTTTGAAGGTAGAAACCGTAAGACGAACATGACTCTCCACAATGGTATAATATTGTCCTCTTTAAACA

mRNA sequence

AAACAATCTTTCCCCGCCGAGTGAAGTTTGCGAATAGCGAGAGGGATCGAACATGGATAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGTCCGTCCTCTGCTCCAAATCCCAATTCTTCGAGACCTCCTTCCTCTTCTGCTCCTGCTGCCCCTTCAAAAGTTGCAGAGAAGCCCAAAAAGGCTCCCAGAGTCAGGCCCAAGCTCACACCCGAGCTACTCCTTTCCGAGGATGGTCTAGGTTATGTCCTTCGCCATTTTCCTCGCGCTTTCAAGTATCGCGGCCGTGGACACGAGATCAGTGATTTGGAAAACTTGATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACCCTTTCGAGCATTTTGTACATAAGGTTGAACAAGTAGCTGCTACGAAACGGGTTAAGATGTGTCTTGGAGAACTAAGAGAGAAAGTTGCCAGGGGAGGAGATCCTACAAAGTGGCGCGAATCACCCATTGTAAATGATGCTGATGATGATATCAATAATGAAAACGAAGCCAAAGACTCGGAGGGCTTATTCGATAATCAGGAAGAGGCTTCTTTCAAGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAGGAGCCATTGATGAATTTGCAAAGTGATTCCTTCACCATTGGGGAAACTATGGAAGGTGTTGTCAACCAAGAACCAAACACTAGCAATTCAAATGAAACTCTGCTCACAGAACAACAGAGAGCTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAACGAGCTGCAGCCAAGGCCCGCTCATCGCCAACTGCCTGATTCATGTGCTTGCTTTGTGTAGATTAACTTTGATTGCAAAGCCAAATTACGATCAATGTGTGTGTCTTAGGAACCCGAGTTCAAGAAGGTTCAGAAGTTTACTGAGTTTACACTTATCAAATCGGTTCCTATTTCAATTCGTGTGCTTGAAAATTCGACTTTATCGCACTCAATAACGGGAAACTCAAGAAAAATTATTAAACAACTGTTTTGAAGGTAGAAACCGTAAGACGAACATGACTCTCCACAATGGTATAATATTGTCCTCTTTAAACA

Coding sequence (CDS)

ATGGATAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGTCCGTCCTCTGCTCCAAATCCCAATTCTTCGAGACCTCCTTCCTCTTCTGCTCCTGCTGCCCCTTCAAAAGTTGCAGAGAAGCCCAAAAAGGCTCCCAGAGTCAGGCCCAAGCTCACACCCGAGCTACTCCTTTCCGAGGATGGTCTAGGTTATGTCCTTCGCCATTTTCCTCGCGCTTTCAAGTATCGCGGCCGTGGACACGAGATCAGTGATTTGGAAAACTTGATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACCCTTTCGAGCATTTTGTACATAAGGTTGAACAAGTAGCTGCTACGAAACGGGTTAAGATGTGTCTTGGAGAACTAAGAGAGAAAGTTGCCAGGGGAGGAGATCCTACAAAGTGGCGCGAATCACCCATTGTAAATGATGCTGATGATGATATCAATAATGAAAACGAAGCCAAAGACTCGGAGGGCTTATTCGATAATCAGGAAGAGGCTTCTTTCAAGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAGGAGCCATTGATGAATTTGCAAAGTGATTCCTTCACCATTGGGGAAACTATGGAAGGTGTTGTCAACCAAGAACCAAACACTAGCAATTCAAATGAAACTCTGCTCACAGAACAACAGAGAGCTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAACGAGCTGCAGCCAAGGCCCGCTCATCGCCAACTGCCTGA

Protein sequence

MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSRPPSSSAPAAPSKVAEKPKKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA

Homology

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BLAST of Carg23009 vs. NCBI nr
Match: XP_022946681.1 (TIMELESS-interacting protein [Cucurbita moschata])

HSP 1 Score: 478.4 bits (1230), Expect = 1.6e-131
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAP XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120
           VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE
Sbjct: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180
           HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180

Query: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ-EPNT 240
           FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ EPNT
Sbjct: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEEPNT 240

Query: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA
Sbjct: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277

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BLAST of Carg23009 vs. NCBI nr
Match: XP_022999094.1 (TIMELESS-interacting protein [Cucurbita maxima])

HSP 1 Score: 465.7 bits (1197), Expect = 1.1e-127
Identity = 256/277 (92.42%), Postives = 257/277 (92.78%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPN             XXXXXXXXXXXXXX
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNFSRPPSSSAPAXXXXXXXXXXXXXX 60

Query: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120
                TPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE
Sbjct: 61  XXXXXTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180
           HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180

Query: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ-EPNT 240
           FDNQEEAS KNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGET+EGVVNQ EPNT
Sbjct: 181 FDNQEEASLKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETVEGVVNQEEPNT 240

Query: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA
Sbjct: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277

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BLAST of Carg23009 vs. NCBI nr
Match: XP_023545691.1 (TIMELESS-interacting protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443.4 bits (1139), Expect = 5.8e-121
Identity = 262/278 (94.24%), Postives = 263/278 (94.60%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120
            RPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE
Sbjct: 61  XRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVN-DADDDINNENEAKDSEG 180
           HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVN            AKDSEG
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNXXXXXXXXXXXXAKDSEG 180

Query: 181 LFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ-EPN 240
           LFDNQEEAS KNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGET+EGVVNQ EPN
Sbjct: 181 LFDNQEEASLKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETVEGVVNQEEPN 240

Query: 241 TSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           TSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA
Sbjct: 241 TSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 278

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BLAST of Carg23009 vs. NCBI nr
Match: XP_022143008.1 (TIMELESS-interacting protein [Momordica charantia])

HSP 1 Score: 386.0 bits (990), Expect = 1.1e-103
Identity = 232/281 (82.56%), Postives = 244/281 (86.83%), Query Frame = 0


Query: 2   DKDNAAVAAPTGCYKCGKPGHWSRDCPSSAP------NXXXXXXXXXXXXXXXXXXXXXX 61
           +KDNAAVA PTGCYKCGKPGHWSRDCPSSAP      N XXXXXXXXXXXXXXXXXXXXX
Sbjct: 4   EKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSXXXXXXXXXXXXXXXXXXXXX 63

Query: 62  XXXXXVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILP 121
           XXXXX        LLLSEDGLGYVLRHFPRAFKYRGRGHE+SDLEN IGLYREWHSHILP
Sbjct: 64  XXXXXXXXXXXXXLLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILP 123

Query: 122 YYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAK 181
           YY FEHFVHKVEQVAATKRVKM LGELRE+VARGGDPTKWRESP VN   +D+NNE EAK
Sbjct: 124 YYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVN---EDVNNETEAK 183

Query: 182 DSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ 241
           DSE LFDN EEAS +NNG DD+EEDMLQE+YEKAT EEPL NLQSDS TIGETMEGV NQ
Sbjct: 184 DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKAT-EEPLQNLQSDSHTIGETMEGVSNQ 243

Query: 242 EPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           EPN SNS+ET +TE+QR RMEANRLKALERAA+KARS  TA
Sbjct: 244 EPNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA 280

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BLAST of Carg23009 vs. NCBI nr
Match: XP_008456510.1 (PREDICTED: TIMELESS-interacting protein [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 9.7e-84
Identity = 186/283 (65.72%), Postives = 193/283 (68.20%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPN----XXXXXXXXXXXXXXXXXXXXXXX 60
           MDKDN A+AAPTGCYKCGKPGHWSRDCPSSAPN                         XX
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSSAPAAPSKAVEKXX 60

Query: 61  XXXXVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120
           XXXX    LTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY
Sbjct: 61  XXXXXXXXLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKD 180
           Y FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+ND DDD+NNE EAKD
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND-DDDVNNEKEAKD 180

Query: 181 SEGLFDNQEEASFKNNGADDIEEDMLQ----EVYEKATEEEPLMNLQSDSFTIGETMEGV 240
            EG+FDN EEAS +NNGADDIEEDMLQ                                 
Sbjct: 181 PEGVFDNPEEASLRNNGADDIEEDMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 VNQEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276
                             QR RMEANRLKALERAAAKARS  T
Sbjct: 241 XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLAT 282

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BLAST of Carg23009 vs. TAIR10
Match: AT3G02820.1 (zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 211.1 bits (536), Expect = 8.8e-55
Identity = 129/269 (47.96%), Postives = 158/269 (58.74%), Query Frame = 0


Query: 9   AAPTGCYKCGKPGHWSRDCPSSAP---NXXXXXXXXXXXXXXXXXXXXXXXXXXXV---- 68
           +APTGC+KCG+PGHWSRDCPSSAP   N                           +    
Sbjct: 3   SAPTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKSGTSIAPAP 62

Query: 69  --------RPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHI 128
                   RPKLTPELLLSEDGLGYVLR+FP++FKYRGRG E+SDL NLI LY EWH+H+
Sbjct: 63  KVTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRGKEVSDLGNLIRLYSEWHTHL 122

Query: 129 LPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDA-DDDINNEN 188
           LPYY F+HFVHKV+QVA+TKRVK C+ ELRE+VA G DP K  E    N    DD + + 
Sbjct: 123 LPYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVDPNKLYEKQEENTVPSDDQDMDQ 182

Query: 189 EAKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGV 248
            + D E +     +A   +  AD  E+ ML E+++ A++      L SD           
Sbjct: 183 PSHDEENIPSKSVDA---DTNADAFEDSMLNEIFDNASK------LPSD----------- 242

Query: 249 VNQEPNTSNSNETLLTEQQRARMEANRLK 262
              E N   S+E  LTE+QRARMEANRLK
Sbjct: 243 ---EQNMDKSSE--LTEEQRARMEANRLK 246

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BLAST of Carg23009 vs. Swiss-Prot
Match: sp|Q4QR88|TIPIN_RAT (TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-08
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = 0


Query: 63  PKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEHF 122
           PKL    L SE GL   LRH     K++G+GHE  DL+ LI     W   + P   FE F
Sbjct: 62  PKLDATRLTSERGLP-ALRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDF 121

Query: 123 VHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 181
           + +VE +   K V+ CL  +R             + PIV+  +D +NN +E +++  L
Sbjct: 122 IDRVENLGNKKEVQTCLKRIR------------LDLPIVH--EDFVNNNDEVEETNSL 164

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BLAST of Carg23009 vs. Swiss-Prot
Match: sp|Q91WA1|TIPIN_MOUSE (TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-08
Identity = 40/117 (34.19%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 63  PKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEHF 122
           PKL    L SE GL   LRH     K++G+GHE  DL+ LI     W   + P   FE F
Sbjct: 62  PKLDATRLTSERGLP-ALRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDF 121

Query: 123 VHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEG 180
           + +VE +   K V+ CL  +R             + PIV+  +D +NN +E  ++ G
Sbjct: 122 IDRVENLGNKKEVQTCLKRIR------------LDLPIVH--EDFVNNNDEVGEANG 163

[Close]

BLAST of Carg23009 vs. Swiss-Prot
Match: sp|Q6DBR4|TIPIN_DANRE (TIMELESS-interacting protein OS=Danio rerio OX=7955 GN=tipin PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 62  RPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEH 121
           RPKL    L+SE GL   LR      K++G+GHE  +L+ L+     W   + P   FE 
Sbjct: 71  RPKLDANRLISEKGLP-ALRTLFEDVKFKGKGHETENLKLLMLKMENWAHRLYPKMQFEE 130

Query: 122 FVHKVEQVAATKRVKMCLGELR 144
           F+ KVE +   K V+ CL  +R
Sbjct: 131 FIDKVENLGGKKEVQTCLKRIR 151

[Close]

BLAST of Carg23009 vs. Swiss-Prot
Match: sp|Q5F416|TIPIN_CHICK (TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-07
Identity = 61/207 (29.47%), Postives = 89/207 (43.00%), Query Frame = 0


Query: 63  PKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEHF 122
           PKL    L+SE GL   LRH     K++G+GHE  DL+ L+     W   + P   F+ F
Sbjct: 72  PKLDANRLVSERGLP-ALRHMFDNVKFKGKGHEAEDLKTLLRHMEHWAHRLFPKLQFDDF 131

Query: 123 VHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGLFD 182
           + +VE +   K V+ CL  +R             + PI++  +D   NE    +S GL  
Sbjct: 132 IDRVESLGNKKEVQTCLKRIR------------LDLPILH--EDFTANEGGGGESNGL-- 191

Query: 183 NQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEPNTSNS 242
                                   + ATEE     + S S  +GE     ++  P T+  
Sbjct: 192 ------------------------DMATEE-----VHSFSGNVGE-----LDSLPGTT-- 221

Query: 243 NETLLTEQQRARMEANRLKALERAAAK 270
               LTE+Q+ R++ NR  ALER  AK
Sbjct: 252 ----LTEEQQQRIKRNRQLALERRQAK 221

[Close]

BLAST of Carg23009 vs. Swiss-Prot
Match: sp|Q9BVW5|TIPIN_HUMAN (TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-07
Identity = 51/172 (29.65%), Postives = 80/172 (46.51%), Query Frame = 0


Query: 63  PKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFEHF 122
           PKL  + L+SE GL   LRH     K++G+GHE  DL+ LI     W   + P   FE F
Sbjct: 65  PKLDAQRLISERGLP-ALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDF 124

Query: 123 VHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSE---G 182
           + +VE + + K V+ CL  +R       D     E  + N+ +   NNE++   +E    
Sbjct: 125 IDRVEYLGSKKEVQTCLKRIRL------DLPILHEDFVSNNDEVAENNEHDVTSTELDPF 184

Query: 183 LFDNQEEASFKNNGADDIEEDMLQEV--YEKATEEEPLMNLQSDSFTIGETM 230
           L +  E   F +  +  + E+  Q +   ++   E     L S+S T+G  M
Sbjct: 185 LTNLSESEMFASELSRSLTEEQQQRIERNKQLALERRQAKLLSNSQTLGNDM 229

[Close]

BLAST of Carg23009 vs. TrEMBL
Match: tr|A0A1S3C4P4|A0A1S3C4P4_CUCME (TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.4e-84
Identity = 186/283 (65.72%), Postives = 193/283 (68.20%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPN----XXXXXXXXXXXXXXXXXXXXXXX 60
           MDKDN A+AAPTGCYKCGKPGHWSRDCPSSAPN                         XX
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSSAPAAPSKAVEKXX 60

Query: 61  XXXXVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120
           XXXX    LTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY
Sbjct: 61  XXXXXXXXLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKD 180
           Y FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+ND DDD+NNE EAKD
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILND-DDDVNNEKEAKD 180

Query: 181 SEGLFDNQEEASFKNNGADDIEEDMLQ----EVYEKATEEEPLMNLQSDSFTIGETMEGV 240
            EG+FDN EEAS +NNGADDIEEDMLQ                                 
Sbjct: 181 PEGVFDNPEEASLRNNGADDIEEDMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 VNQEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276
                             QR RMEANRLKALERAAAKARS  T
Sbjct: 241 XXXXXXXXXXXXXXXXXXQRVRMEANRLKALERAAAKARSLAT 282

[Close]

BLAST of Carg23009 vs. TrEMBL
Match: tr|A0A0A0LI96|A0A0A0LI96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 200/280 (71.43%), Postives = 209/280 (74.64%), Query Frame = 0


Query: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSS----APNXXXXXXXXXXXXXXXXXXXXXXX 60
           M+KDN AV APTGC+KCGKPGHWSRDCPSS       XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120
           XXXX         LLS+DGLGYVLRHFPRAFKYRGRGHEI+DLENLIGLYREWHSHILPY
Sbjct: 61  XXXXXXXXXXXXXLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120

Query: 121 YPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKD 180
           Y FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+ND             
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDXXXXXXXXXXXXX 180

Query: 181 SEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQE 240
                                       VYEKAT EEPL N QSDS TIG TMEGV NQE
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVYEKAT-EEPLQNEQSDSLTIGGTMEGVANQE 240

Query: 241 PNTSNSNETL-LTEQQRARMEANRLKALERAAAKARSSPT 276
           P TSNS+ET  LTE+QR RMEANRLKALERAAAKARS PT
Sbjct: 241 PKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPT 279

[Close]

BLAST of Carg23009 vs. TrEMBL
Match: tr|W9SKS8|W9SKS8_9ROSA (TIMELESS-interacting protein OS=Morus notabilis OX=981085 GN=L484_014991 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.6e-69
Identity = 159/281 (56.58%), Postives = 187/281 (66.55%), Query Frame = 0


Query: 9   AAPTGCYKCGKPGHWSRDCPSSAP---------------NXXXXXXXXXXXXXXXXXXXX 68
           AAPTGCYKCG+PGHWSRDCPSSAP                                    
Sbjct: 6   AAPTGCYKCGRPGHWSRDCPSSAPIPNSNPNLNTSFRSTPSSSSFKSGPGTAEKSSAKPP 65

Query: 69  XXXXXXXVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHI 128
                  VRPKLTP+LLLS+DGLGYVLRHFPRAFKYRGRGHE+SDL NLI +Y EWHS +
Sbjct: 66  KKVLPPRVRPKLTPQLLLSDDGLGYVLRHFPRAFKYRGRGHEVSDLGNLIRMYGEWHSRL 125

Query: 129 LPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENE 188
           LPYY F+ FVHKVEQVAATKRVK CL ELRE+VA GGDPTK  E P+    D++ ++  E
Sbjct: 126 LPYYSFDQFVHKVEQVAATKRVKTCLRELRERVASGGDPTKLHEPPV---EDENPHDGQE 185

Query: 189 AKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVV 248
           A  SE +  ++E++S KN+  DDI+EDMLQ+VYE A  E+P  NLQ+      E    + 
Sbjct: 186 AISSEEVRHHKEDSSSKNHNIDDIQEDMLQDVYENAI-EQPSANLQNGITPAKE----LP 245

Query: 249 NQEPN--TSNSNETLLTEQQRARMEANRLKALERAAAKARS 273
           NQ PN   S S E  +TE+QRARMEANRLKALE+AAA+ARS
Sbjct: 246 NQVPNDKVSQSIENDITEEQRARMEANRLKALEKAAARARS 278

[Close]

BLAST of Carg23009 vs. TrEMBL
Match: tr|A0A2N9J0M3|A0A2N9J0M3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47793 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 159/292 (54.45%), Postives = 188/292 (64.38%), Query Frame = 0


Query: 4   DNAAVAAPTGCYKCGKPGHWSRDCPS-------------SAPN-XXXXXXXXXXXXXXXX 63
           +N   AAPTGCYKCG+PGHWSRDCPS             S PN                 
Sbjct: 2   ENEKAAAPTGCYKCGRPGHWSRDCPSSPGTASASAPIPNSKPNPESTRYSSFKTTSSSVA 61

Query: 64  XXXXXXXXXXXVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREW 123
                       RPKLTP+LLLS+DGLGYVLRHFPRAFKYRGRGHE SDL NLIGLY EW
Sbjct: 62  KSSEKQKKAPRTRPKLTPDLLLSDDGLGYVLRHFPRAFKYRGRGHEASDLGNLIGLYSEW 121

Query: 124 HSHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVND---ADD 183
           HS +LPYY F+ FVHK EQVAATKRVKMCL ELRE+VA GGDPTK RE P+VND    + 
Sbjct: 122 HSRLLPYYSFDQFVHKTEQVAATKRVKMCLRELRERVANGGDPTKLRE-PLVNDDSNVEQ 181

Query: 184 DINNENEAKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIG 243
           D++   EA +SE    NQ + S  NN A+ I ED+L +++E ATE     NL        
Sbjct: 182 DLSTPAEAINSEAPSQNQGDPSLWNNDANVI-EDILHDIHETATE-----NLHC------ 241

Query: 244 ETMEGVVNQEPN--TSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277
           ET+   +N+ PN  T+  +E  ++E+Q+ARME+NRLKALERAAA+ARSS  A
Sbjct: 242 ETVAADINEVPNGGTTTISEIQISEEQKARMESNRLKALERAAARARSSQAA 280

[Close]

BLAST of Carg23009 vs. TrEMBL
Match: tr|A0A2I4GAM4|A0A2I4GAM4_9ROSI (TIMELESS-interacting protein isoform X1 OS=Juglans regia OX=51240 GN=LOC109006188 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.6e-66
Identity = 155/283 (54.77%), Postives = 184/283 (65.02%), Query Frame = 0


Query: 4   DNAAVAAPTGCYKCGKPGHWSRDCPS--------SAPN-XXXXXXXXXXXXXXXXXXXXX 63
           +N   AAPTGCYKCG+PGHWSRDCPS        SAPN                      
Sbjct: 2   ENGKGAAPTGCYKCGRPGHWSRDCPSSTSSSAFVSAPNPDLDSTRSSPPKSTAALAKSSQ 61

Query: 64  XXXXXXVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHIL 123
                  RPKLTP+LLLS+DGLGYVLRHFPRAFKYRGRGHE+SDL NLIGLY EWHSH+L
Sbjct: 62  KAVKSRSRPKLTPDLLLSDDGLGYVLRHFPRAFKYRGRGHEVSDLGNLIGLYSEWHSHLL 121

Query: 124 PYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEA 183
           PYY F+ F+HKVEQVAATKRVKMCL ELRE+V +GGDPTK +E P+     D++N E EA
Sbjct: 122 PYYSFDQFIHKVEQVAATKRVKMCLRELRERVGKGGDPTKLQEPPV---QYDNLNVEQEA 181

Query: 184 KDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNL-QSDSFTIGETMEGVV 243
            D+E L   Q + S +NN ADD++  ML + Y+  TE      +  +D       +E   
Sbjct: 182 MDNEALSHQQADPSSRNNDADDMQA-MLHDSYQNDTENLHAEEMVAADKLGASGCVEEFP 241

Query: 244 NQEPN--TSNSNETLLTEQQRARMEANRLKALER-AAAKARSS 274
           +Q PN   +N  E  +TE+QR RMEANRLKALER AAA+ RSS
Sbjct: 242 DQVPNNGAANFREIQVTEEQRERMEANRLKALERAAAARFRSS 280

The following BLAST results are available for this feature:

BLAST of Carg23009 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946681.1	1.6e-131	99.28	TIMELESS-interacting protein [Cucurbita moschata]	[more]
XP_022999094.1	1.1e-127	92.42	TIMELESS-interacting protein [Cucurbita maxima]	[more]
XP_023545691.1	5.8e-121	94.24	TIMELESS-interacting protein [Cucurbita pepo subsp. pepo]	[more]
XP_022143008.1	1.1e-103	82.56	TIMELESS-interacting protein [Momordica charantia]	[more]
XP_008456510.1	9.7e-84	65.72	PREDICTED: TIMELESS-interacting protein [Cucumis melo]	[more]

BLAST of Carg23009 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02820.1	8.8e-55	47.96	zinc knuckle (CCHC-type) family protein	[more]

BLAST of Carg23009 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q4QR88\|TIPIN_RAT	2.7e-08	33.90	TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1	[more]
sp\|Q91WA1\|TIPIN_MOUSE	4.5e-08	34.19	TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2	[more]
sp\|Q6DBR4\|TIPIN_DANRE	1.3e-07	37.80	TIMELESS-interacting protein OS=Danio rerio OX=7955 GN=tipin PE=2 SV=1	[more]
sp\|Q5F416\|TIPIN_CHICK	2.9e-07	29.47	TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1	[more]
sp\|Q9BVW5\|TIPIN_HUMAN	3.8e-07	29.65	TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2	[more]

BLAST of Carg23009 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C4P4\|A0A1S3C4P4_CUCME	6.4e-84	65.72	TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=4 SV=1	[more]
tr\|A0A0A0LI96\|A0A0A0LI96_CUCSA	1.1e-78	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 PE=4 SV=1	[more]
tr\|W9SKS8\|W9SKS8_9ROSA	2.6e-69	56.58	TIMELESS-interacting protein OS=Morus notabilis OX=981085 GN=L484_014991 PE=4 SV...	[more]
tr\|A0A2N9J0M3\|A0A2N9J0M3_FAGSY	1.6e-66	54.45	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47793 PE=4 SV=1	[more]
tr\|A0A2I4GAM4\|A0A2I4GAM4_9ROSI	1.6e-66	54.77	TIMELESS-interacting protein isoform X1 OS=Juglans regia OX=51240 GN=LOC10900618...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048478	replication fork protection
GO:0007049	cell cycle
GO:0006974	cellular response to DNA damage stimulus

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR012923	Csm3
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0048478	replication fork protection
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23009-RA	Carg23009-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 13..29 e-value: 7.4E-7 score: 38.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 13..29 e-value: 1.4E-8 score: 34.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 14..29 score: 11.581
IPR012923	Chromosome segregation in meiosis protein 3	PFAM	PF07962	Swi3	coord: 64..145 e-value: 2.2E-22 score: 78.7
IPR012923	Chromosome segregation in meiosis protein 3	PRODOM	PD089639		coord: 62..147 e-value: 1.0E-36 score: 384.0
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 12..63 e-value: 2.0E-9 score: 39.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..163
None	No IPR available	PANTHER	PTHR13220	TIMELESS INTERACTING-RELATED	coord: 2..272
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 10..33

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23009	Cla013615	Watermelon (97103) v1	carwmB1071
Carg23009	Csa2G009510	Cucumber (Chinese Long) v2	carcuB1087
Carg23009	MELO3C004425	Melon (DHL92) v3.5.1	carmeB1042
Carg23009	ClCG02G017080	Watermelon (Charleston Gray)	carwcgB1042
Carg23009	CSPI02G02530	Wild cucumber (PI 183967)	carcpiB1109
Carg23009	Cucsa.132860	Cucumber (Gy14) v1	carcgyB1188
Carg23009	CmaCh05G012330	Cucurbita maxima (Rimu)	carcmaB1484
Carg23009	CmoCh05G012590	Cucurbita moschata (Rifu)	carcmoB1442
Carg23009	Lsi11G004040	Bottle gourd (USVL1VR-Ls)	carlsiB978
Carg23009	Cp4.1LG11g10150	Cucurbita pepo (Zucchini)	carcpeB1494
Carg23009	CsGy2G002630	Cucumber (Gy14) v2	carcgybB1053
Carg23009	MELO3C004425.2	Melon (DHL92) v3.6.1	carmedB1056
Carg23009	CsaV3_2G003690	Cucumber (Chinese Long) v3	carcucB1120
Carg23009	Cla97C02G042780	Watermelon (97103) v2	carwmbB1129
Carg23009	Bhi06G001544	Wax gourd	carwgoB1261

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23009	Wax gourd	carwgoB1260
Carg23009	Silver-seed gourd	carcarB297
Carg23009	Silver-seed gourd	carcarB614
Carg23009	Cucurbita maxima (Rimu)	carcmaB1483
Carg23009	Cucurbita moschata (Rifu)	carcmoB1441
Carg23009	Cucurbita pepo (Zucchini)	carcpeB1496
Carg23009	Cucurbita pepo (Zucchini)	carcpeB1497