CsGy2G002630.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATCTCAATTCAACTTAAAAATCTAAACCAAACCGAGTAAGAATCATTTCAAGATTATTTGTTACAATAGTTTTGTGATAATTTAAACTTAGACAACGGATTTGGTATACAATTGTATTTGTGTGATGAGAGGAATATTTTAAATAGTCATTTTGTTTGATTGCATGACCCATAAATATTTTAAAAATTTGTTATATTTTGTATTAGGAGTATATGAGGTAAGAAATCCAAATTTGGAATGGGCAGGGTTAAATGTGGCTTTAAAGAAAAGAAAAGAAAAGATGGGAATGGCGCCAATGTTCGCGCCAAAAACACCAAGAAGATTTTCCCATAGGGTTTATGATGTTTCGTTCATAATCACAAAGATTCACAAAACACTTACTTCAATTTCTCCACACAAAAGTTAATTCCAAATTTCCATATCCCCATCGGATCGGATCCAACATGGAGAAGGACAACAACGCCGTCCCAGCGCCGACGGGATGCTTCAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCTACTTCCAATTCTTCCACACCTTCTTTCTCCTCTCCTCCTGCTGCTCCTTCAAAAGCTGTAGAGAAGCCAAAGAAAGCCCCCAGAACCAGGCCCAAGCTCACTCCTGAGCTACTCCTTTCCGACGATGGTCTAGGTTACGTCCTTCGCCATTTTCCTCGTGCTTTCAAGTATCGTGGCCGTGGACACGAGGTTATCTTCTATTTTTCTTCCCATTCTAACTTAATTAGTTCATTTGTTCCCATCTGGCATATATGAGTTTTGTTTGAGTTATATTTCAACATTGCTGTTCAACAACAAATGGGGTTTCGAAAATAATATAGTAATTACAGTCTGGTGCGTTCTATGGTCTACGTTTTTGTTACGAATTCGAGCATCAAAGGAAACAGTAAACGTAAATGGTAGAATAATCGAAAGGTGGTTCACTAACTATTTTAACATCATCTAAGTGCAGTGGTAGAGATCAACTATATTATCAGAGATAAACGTCGGATTACAGATTATAGAGAGCTTATAAAGTCTATATACAGTGCATTAAACTATTCTAAACCTTAGAGCCAAAATTGTAAATAATATAAATATGAATACAACCAACACCCATAAACCCCAATCTAGGCTTGTAGACCCAGACTTATTGATCGGTTAGCGAGATCCAGTGATTGGTCATTCAAAGCAGCAAGTAAAAAATTAAGACATTGCTGTATAATTAGAAACAATTTTAATGCGCATACATATTTCAATGAAGAATTGTTTGAGAGAGCCCAAGCTTCGTCAGGGGAAATCGGTACTTACCCGTAATGGTTTGTTTATTGGAAATCCGGTTTCAAACTTTTTTCCATTGAATTATAGCCATGTGTATTTCATCAACAATGTGTACGTACATGTATAATTTTTCTTATTACGGTGTCGTTGTCTCATCCATTGTCATTTTCTAATGATTTGATTATTGCACTAATCGAGATATACTTTTGACTGGTGTTTTGCAGATCAATGATTTGGAAAATCTTATTGGATTATACAGGGAATGGCATTCTCATATACTCCCCTATTACTCTTTCGAGCATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTAAAGGTAAAAATGACTGTTTTTTGTTCTTTTACAATGAGCGTATCACAGAGGTGTACATACATGGCTTCAAAATACATAAGTTTAGCCTAATAGCATACTGTGATACTAGTATTGATAGAATTTGATCTAAAGGAACTGCTCTTAAGAAACCCAGTGCATCTGAAGGGAGTAGAGACAGAGAGTGTGAACTCCGTAATATTTTAACTGAATCCTTATTTTTTAAATCAGATCAACACGGAGCAAGTTTGTTTATTAAATGATATCTAATTTGTAATGAATTGGCGTTCTTACTAAAAAGACATTTTGATCAGATGTGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGTGAGGCACCAATTTTAAATGATGATGATGATGATGTCAACAATGAAAAAGGTACCTTCTAGTATTCTCATTTATTAGAAGACACATATATTTTCATCCTATTTGGTCAAATTGTGTTTGTGTTTAGTAAGTTAATCATTGCCCTCTCATTCTGTTTAAAAAAATTAAATATGGTTTAGATAAATTTGAAGTCGACTGAACTGCCAATATAATGAAGCAAGCAACAATTACTATCGTTGTTTTTCATGTCCCACTCCCACCAGACAGCTCCATATAAAATTGTCGTTCTCAGATTTGCGTTGGTAGAACGATGTTGGCTTGGGCTCAATCTATCTGAGTGTATTTAAGGGGCTGGTTGGTATCAATAAGCTTAATTATGATGGAGAACACACCCTCTGGTGAGGAGTTGTATGTGGCTTTTGTTTTTCATTAGCCATTACTTATCTTCATCTTCCGTCAATATATTGCCTCCGTCGAACTTCTCATCTTTCTTAGGCATTGGTATCCAAATCTTTTTTCCGTTGAGTCACATTTTACTAGATTGGGGCTTATTATAGTTGGCCCTTCTTGACGTGGACTTCTCCGTTTTGTTTGTCTATGTATACTTTCTTACTTTCATTCTAAGAAGCACAGACACGAGATACGAAAACGACATGATACAGACACGACGGCACACCATATTTTAAAAATCTAGGACACGACACAGCAAGGACACGTTTATTAAAATATCATATTAAAAGTATATATATCATTTTTATAGTAAAAGAAAATTCATAGTAAATGAATTGATGCATTTATATGTTTAAAAGACTTAGCATGATGTATCTCATGTCCAAAAATTATTATTATTGTCATATATGTGTCTTTTTAGCCTACTCAATGAGTGTTCTATGCATATCTAATACATTTGTTGCACTAACAAGTGTCCGAAAGGTGTCCGCCAAGTGTCAAAGTGCCTAAGTGTCCGACACGGTTACACTATCCAAACTGAAGTGTCCGACACGGTTACACTATCCAAACTGAAGTGTCCATGCTTCTTAGCTTTCATTTCTTCTTAGCTTTCATTTCTTGTCAATGAAAGTTAAGTTTTTTAATTTAAAATGTCGTGGATACATCGGGAAAGTGGAAAAACTTCACAATCTTTTTAAGATACATAAGTTACCATCTCATTCATAATTGATTTTGAGATGGAATGAAAAGGAACTTCTCATCTTCCTCTATTCATTCATACGCTTGGGAATTTTGATAACAATATAAACCTTTGCCAACTGGGGCTTAGTTCGAAATACCCTCTAACCCTTTGGCATCTGGATGCCCACTTTAGTATGCACTAAGCAGTTGGTGCTTGGGATGGGTATATTGTATCAGAATGTTGTCAGTAATTAATAGTTATGTTGGATTCATAATTTTCTTTGTACTTTGTGGTATGGTATGATGCTGGCTGTGTGGTTAGAAATGTAACTTAGGAATTTAAATTCATCTACTTGAGTATTTTCTAATTTCTCATGTGTGAAACAATTCTCTGATGTGATGATTGGAAAAGATTTTTAGATCCTGAGGCTAATCATTATTTGATTACCCCTCTGCTTGAAATTTAAACCCGTCTGCCAATCCTTGCAGAAGCCAAGGATCCGGATGATGTATTCGATAATCAGGAAGAGGCGTCTTTGAGGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGTAAGTCTTTCTTTGTTCATTTCTTTTTCTTCTGAACAATTGGTTGGTTTCCATCCCTACCATTGTTTTAGTTTCAATCATATTCTTACTAAGAAAAGCGTCGTAATTACTGAATTGAACGAAGAAATTTTACCACGAGTCATAAATGTAGATTTCCGGAATATTCATAGTGAAGCAAACTATGTTTCTTGAGCCCTTTACTTGGCAGACCAATTTTCCAGATGAAATTGTCAGGTCGTTTATCAAAAAATATATATGTTACTGCACCCCCCCCCCATTAACTAAAATTTGCGCTTAAAGCTTATTTTTATCAGGTCTATAATTTCTTTTGTTAGGGATAAAACCAATTTATATCCCTAAAATGTTGTACTCTTATAACTCCAAACTAATAATTCTGTAAGTTTAAACCCCAACTTTCAAATCAATTTAGATGAATTGTTAGTGATTTATAGCTACTTTCACTCAATTCCAATATAAGATCAAAACCACATAAATATAATTATTCTTCTCCCAAGTCCCATCGCACCTAAGTAGCAAGAAAACTTGTCATGTGACTCTTTCCAATTAAGTAAAGAAAAATAGAGCGAGTCTAGAAGATGAAATCATTCAAAGTTCCTGAAAATAGCACCGCCATTTATTACCTTACTGCATTTCTCTCATTTACATCTGTCCTTGTATATGGAGAAGCTTCATTCATAGGTGAAAGTTATGAAGTGTGATACAAGTACGAAGAAGTTTTATACACGGGTGAAAGCTATGCATTAAACGGTTTTCACCTAAGCTCTTTGGGCAAAACCCTTGTGCATATACTAACGATATCTATCGATGGAACCTTCCACTGGATGAGAAACTTGAAGCAAGAATACCTCCATTATATTATCTAGCATTTGTATAATCTCTAACTAGAGATTGCTTGTTTTTTTTATGACAAACATTGGAAATTATAGGATTGCCCAGAAGATTACATAAAACAATTCCAATATGACCTAAGAGAACTCAAATTTGTTGAAACCCAACACCATTTCCTGACGTATTACCCGACGATCTACAACTGATTGCTGATTTTATTTACATGGTTGTAGGAACCGTTGCAGAATGAACAAAGTGATTCCTTAACCATTGGTGGAACTATGGAAGGTGTGGCCAACCAAGAACCCAACCAAGAACCAAAGACTAGCAATTCAAGTGAAACAAGTGAGCTCACAGAGGAACAGAGAGTTCGAATGGAAGCAAACAGGTTGAAGGCCTTAGAAAGAGCTGCAGCCAAGGCCCGCTCGTTGCCTACTGTTTAGATAAACATTCAAAGTGATGGTTTTTGGCTTGGAAAGGTTCAACCACCTTAGGGAGTTTCTTCCTTAAACCTCCAATTTTTTCCCTAAATTTCGACGAATGAGTCCTTGGAATGTCAATTCGGAATTTTAGATGCTCATTTTGAAAGGTTTATATTAAATTGTTAATCATATGAGCCTGCATTGTAAATTAATAATTTTAAGTTTATAAATCATTTTCTTTTGTATGTTTCTTCTTATCCATGCACTAATCTTAAATTTAATCTCCCCTATGGTTGAT AATCTCAATTCAACTTAAAAATCTAAACCAAACCGAGTAAGAATCATTTCAAGATTATTTGTTACAATAGTTTTGTGATAATTTAAACTTAGACAACGGATTTGGTATACAATTGTATTTGTGTGATGAGAGGAATATTTTAAATAGTCATTTTGTTTGATTGCATGACCCATAAATATTTTAAAAATTTGTTATATTTTGTATTAGGAGTATATGAGGTAAGAAATCCAAATTTGGAATGGGCAGGGTTAAATGTGGCTTTAAAGAAAAGAAAAGAAAAGATGGGAATGGCGCCAATGTTCGCGCCAAAAACACCAAGAAGATTTTCCCATAGGGTTTATGATGTTTCGTTCATAATCACAAAGATTCACAAAACACTTACTTCAATTTCTCCACACAAAAGTTAATTCCAAATTTCCATATCCCCATCGGATCGGATCCAACATGGAGAAGGACAACAACGCCGTCCCAGCGCCGACGGGATGCTTCAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCTACTTCCAATTCTTCCACACCTTCTTTCTCCTCTCCTCCTGCTGCTCCTTCAAAAGCTGTAGAGAAGCCAAAGAAAGCCCCCAGAACCAGGCCCAAGCTCACTCCTGAGCTACTCCTTTCCGACGATGGTCTAGGTTACGTCCTTCGCCATTTTCCTCGTGCTTTCAAGTATCGTGGCCGTGGACACGAGATCAATGATTTGGAAAATCTTATTGGATTATACAGGGAATGGCATTCTCATATACTCCCCTATTACTCTTTCGAGCATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTAAAGATGTGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGTGAGGCACCAATTTTAAATGATGATGATGATGATGTCAACAATGAAAAAGAAGCCAAGGATCCGGATGATGTATTCGATAATCAGGAAGAGGCGTCTTTGAGGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAACCGTTGCAGAATGAACAAAGTGATTCCTTAACCATTGGTGGAACTATGGAAGGTGTGGCCAACCAAGAACCCAACCAAGAACCAAAGACTAGCAATTCAAGTGAAACAAGTGAGCTCACAGAGGAACAGAGAGTTCGAATGGAAGCAAACAGGTTGAAGGCCTTAGAAAGAGCTGCAGCCAAGGCCCGCTCGTTGCCTACTGTTTAGATAAACATTCAAAGTGATGGTTTTTGGCTTGGAAAGGTTCAACCACCTTAGGGAGTTTCTTCCTTAAACCTCCAATTTTTTCCCTAAATTTCGACGAATGAGTCCTTGGAATGTCAATTCGGAATTTTAGATGCTCATTTTGAAAGGTTTATATTAAATTGTTAATCATATGAGCCTGCATTGTAAATTAATAATTTTAAGTTTATAAATCATTTTCTTTTGTATGTTTCTTCTTATCCATGCACTAATCTTAAATTTAATCTCCCCTATGGTTGAT ATGGAGAAGGACAACAACGCCGTCCCAGCGCCGACGGGATGCTTCAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCTACTTCCAATTCTTCCACACCTTCTTTCTCCTCTCCTCCTGCTGCTCCTTCAAAAGCTGTAGAGAAGCCAAAGAAAGCCCCCAGAACCAGGCCCAAGCTCACTCCTGAGCTACTCCTTTCCGACGATGGTCTAGGTTACGTCCTTCGCCATTTTCCTCGTGCTTTCAAGTATCGTGGCCGTGGACACGAGATCAATGATTTGGAAAATCTTATTGGATTATACAGGGAATGGCATTCTCATATACTCCCCTATTACTCTTTCGAGCATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTAAAGATGTGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGTGAGGCACCAATTTTAAATGATGATGATGATGATGTCAACAATGAAAAAGAAGCCAAGGATCCGGATGATGTATTCGATAATCAGGAAGAGGCGTCTTTGAGGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAACCGTTGCAGAATGAACAAAGTGATTCCTTAACCATTGGTGGAACTATGGAAGGTGTGGCCAACCAAGAACCCAACCAAGAACCAAAGACTAGCAATTCAAGTGAAACAAGTGAGCTCACAGAGGAACAGAGAGTTCGAATGGAAGCAAACAGGTTGAAGGCCTTAGAAAGAGCTGCAGCCAAGGCCCGCTCGTTGCCTACTGTTTAG MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSAPNPNPTSNSSTPSFSSPPAAPSKAVEKPKKAPRTRPKLTPELLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDDVNNEKEAKDPDDVFDNQEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTIGGTMEGVANQEPNQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPTV
BLAST of CsGy2G002630.1 vs. NCBI nr
Match: XP_004139395.1 (PREDICTED: TIMELESS-interacting protein [Cucumis sativus] >KGN60764.1 hypothetical protein Csa_2G009510 [Cucumis sativus]) HSP 1 Score: 292.0 bits (746), Expect = 2.2e-75 Identity = 247/284 (86.97%), Postives = 247/284 (86.97%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. NCBI nr
Match: XP_022946681.1 (TIMELESS-interacting protein [Cucurbita moschata]) HSP 1 Score: 250.8 bits (639), Expect = 5.7e-63 Identity = 174/284 (61.27%), Postives = 181/284 (63.73%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. NCBI nr
Match: XP_022999094.1 (TIMELESS-interacting protein [Cucurbita maxima]) HSP 1 Score: 250.8 bits (639), Expect = 5.7e-63 Identity = 165/284 (58.10%), Postives = 172/284 (60.56%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. NCBI nr
Match: XP_008456510.1 (PREDICTED: TIMELESS-interacting protein [Cucumis melo]) HSP 1 Score: 249.6 bits (636), Expect = 1.3e-62 Identity = 191/284 (67.25%), Postives = 196/284 (69.01%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. NCBI nr
Match: XP_023545691.1 (TIMELESS-interacting protein [Cucurbita pepo subsp. pepo]) HSP 1 Score: 247.7 bits (631), Expect = 4.8e-62 Identity = 182/285 (63.86%), Postives = 189/285 (66.32%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. TAIR10
Match: AT3G02820.1 (zinc knuckle (CCHC-type) family protein) HSP 1 Score: 168.7 bits (426), Expect = 5.2e-42 Identity = 85/163 (52.15%), Postives = 98/163 (60.12%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. Swiss-Prot
Match: sp|Q9BVW5|TIPIN_HUMAN (TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06 Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. Swiss-Prot
Match: sp|Q3ZCC4|TIPIN_BOVIN (TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 2.0e-06 Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. Swiss-Prot
Match: sp|Q91WA1|TIPIN_MOUSE (TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2) HSP 1 Score: 53.9 bits (128), Expect = 3.4e-06 Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. Swiss-Prot
Match: sp|Q4QR88|TIPIN_RAT (TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.4e-06 Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. Swiss-Prot
Match: sp|Q5F416|TIPIN_CHICK (TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 5.7e-06 Identity = 26/74 (35.14%), Postives = 40/74 (54.05%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. TrEMBL
Match: tr|A0A0A0LI96|A0A0A0LI96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75 Identity = 247/284 (86.97%), Postives = 247/284 (86.97%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. TrEMBL
Match: tr|A0A1S3C4P4|A0A1S3C4P4_CUCME (TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 8.4e-63 Identity = 191/284 (67.25%), Postives = 196/284 (69.01%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. TrEMBL
Match: tr|A0A2I4GAL6|A0A2I4GAL6_9ROSI (TIMELESS-interacting protein isoform X2 OS=Juglans regia OX=51240 GN=LOC109006188 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 5.0e-47 Identity = 97/169 (57.40%), Postives = 108/169 (63.91%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. TrEMBL
Match: tr|A0A2I4GAM4|A0A2I4GAM4_9ROSI (TIMELESS-interacting protein isoform X1 OS=Juglans regia OX=51240 GN=LOC109006188 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 5.0e-47 Identity = 97/169 (57.40%), Postives = 108/169 (63.91%), Query Frame = 0
BLAST of CsGy2G002630.1 vs. TrEMBL
Match: tr|A0A2N9J0M3|A0A2N9J0M3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47793 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45 Identity = 99/174 (56.90%), Postives = 107/174 (61.49%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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