CsGy1G033290 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G033290
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	LOB domain-containing protein 4
Location	Chr1 : 33164925 .. 33167429 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTGGGTTAGGAAAAATTTGCTACAATCTTTGACCAAAACTATTTCAAATTTCATCACTGTTTTGGCTGCCGTTTTTAGACAAGATGTCAAAAGGTTAATTATCAAAAGTGAATGTGTATATATATTTATTTATTTACTCTTACAACTAAATTATTTTACTATTTTTATCTTTCATTTTTAAGTAAAGATTGAAGATTAAATCTTTTACTCCTAAGGAGGAAGGTGATATCGATACTATTGAGTGAAGTCTATATTAACTTTTTGTTTTGACGTAAGAAAATAGAAGTTTTTTTAAAAAAATTATGATATTAAACTCTAAGAAGTTGGTTAAGCTTGAAAGGAATTAGTCATATTCGAAAATGTTGACAAATATTGGTTAAGTTACCATCACATGCTAATACCCATACACACAAATGAAACTATCACCAAAATAAATAAAACTAATAATATAATTCAAAATGTGAAAGATGGAAAATTTAAAAAGTTTCAAATAAATACAAAGAAACCCATGTTCCTACTAAGTATATAATTTAATTATTTTATTGAAGAATTTTAAAAGTGGTAAAATATTGAAATAAAATTCATCAAATTTTCTATAGTTCATTCAAGACTTTTGTAATATCTCGTAAATAATTTTAATATTTTTGTTATCCATAACAATTCTCCTACTTCTTTTAGCCAACAAGAATTCAGTTCAATTGACATACGTGATATGCACATACTTTAGGATAAGAGTTCTCGAATTCAAATTTTCTGTCTTAATTTGTACGGACTAAATTACATTTTTAAAAAAGCAAATAAATGAATTGTTTTTTTAATTAATAATTTCAAAAGAAAGAAAATGGTGTCTTATTGCTATCAACTTTAACGGTTTTAACCTTTCATTGCGACCGTTAATAATTAATAAAATAATATTGTGGAAAATACAAAAAGGTGTGTCTTTTCATTTAAGAAAAGCATCAAATTTTCTTTTCTTTTCTTTTCTCTTTTGTTTAAAGGAAACAGAAATAAAAAAGAATTCAAACAACTCCTTGAAAAAAGAGAGTTCTCAAGTCAAATTCATCATGTACATAAACCAAACAACAAAATTACGAAATTACAAAAGTACCCTATTGTACAACGTAATTACAAATCATACCCTATAACTTTAAATATTACTTTAAACCCTTTAAGAAAGAATACAAAAACAATACTCTAAACACCTAATTGATGGCAAATTTGTACTTTATACATAATTAAAACAAGAACTATACTTATAATATCATATTGTTTTACATTATAAACCTTTTTTAAAAAAACTTGTTAACATCTCAAATGGGTTTTGTGTGTTATATTCCAGAGTAAGACTGGTCAAAATATTTACAAATAATATAAGAAAATGTGACTATCTATTATCAATGATAGACAACAATAAACTCTGATAGGACGACTATATCTATAAAAGATAAATGATAGAAGTCTACTAAGATCTATCAATACTTATAACTAATAAACAATGACATTTTACTATATTTGTAAATGATAATTCAAAAGAATTATAAAATGAATAAATGATTGGATAAAAGCTATTAAGAAGAAAATATAGTTAATTAATAAATTTAAGGTCAAGTTAAGTGAGTAAAGGATAAAATTGATAGATTAATTAATTAATTTTCAAATCTAAAATTTTAATTAAGTTATCTAAAATCACATGCCCTTTTAGGTTTTAGGTTTTAGCTTTGAACCTTTTCTCCCCATTTGGCTTGTACATCACGTGAAGTTATTATTTATTTTAATTAATAAATGTCATGTTATTAAAATTAAAAAACATATATTTAATTAAGACAAAAAAAGAAGAGAAAAAAATGTTATTATGTAGACTTTAAGGGTTAACTGTGGGTAGCCACCCTCCCCTTTTGCTTGTTTGTGGAGTGACAACCAACAAATAGAAACCAAATTAGAAACTACCGTACCATCTTTTATTAACTAAATAACAATAATAGTCCACTAACATTTTAACTTTTTTAGAATCCCCATTGAAGTAGAATATGTTATTATTACGATGTTAACCACTCAGTTTTTGTTCTAAATTTTAGTTTCCTTGTTTACCTTTGCAATGTTTACCTTTTTCTTCTTTATATATAGATTTTTGTTTGAGAAAAAAAATTGACGTTGGTGTTAACATTGCAGGAGCTGCCAATTCATCAACGAGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCTCGAGTGCGCGACCCGGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGACGCCCTCCAAACTCAACTGGCTTTAGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCGTCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCTAGGACCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGAGGAATCAATGTGGTGA

mRNA sequence

ATGAAAGAGCTGCCAATTCATCAACGAGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCTCGAGTGCGCGACCCGGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGACGCCCTCCAAACTCAACTGGCTTTAGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCGTCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCTAGGACCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGAGGAATCAATGTGGTGA

Coding sequence (CDS)

ATGAAAGAGCTGCCAATTCATCAACGAGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCTCGAGTGCGCGACCCGGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGACGCCCTCCAAACTCAACTGGCTTTAGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCGTCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCTAGGACCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGAGGAATCAATGTGGTGA

Protein sequence

MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW

Homology

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BLAST of CsGy1G033290 vs. NCBI nr
Match: XP_004145462.1 (PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus] >KGN66910.1 hypothetical protein Csa_1G713680 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 8.8e-52
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR
Sbjct: 60  LQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 119

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 112
           VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW
Sbjct: 120 VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of CsGy1G033290 vs. NCBI nr
Match: XP_008459081.1 (PREDICTED: LOB domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 2.4e-49
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR
Sbjct: 60  LQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 119

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 112
           VRQTASFSNYGLSPTSPSNSGSPSSRL+GS SR MFEMDMVVDQA+E+SMW
Sbjct: 120 VRQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSMW 170

[Close]

BLAST of CsGy1G033290 vs. NCBI nr
Match: XP_022927419.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB domain-containing protein 4-like [Cucurbita maxima] >XP_023520045.1 LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 4.2e-46
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHLR
Sbjct: 62  LQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLR 121

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-SRTMFEMDMVVDQAMEESMW 112
           VRQTASFSNYGLSPTSP NSGSPSSRLMGSQ SR MFEMDMVVDQAM +S+W
Sbjct: 122 VRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of CsGy1G033290 vs. NCBI nr
Match: OMO65919.1 (hypothetical protein COLO4_30929 [Corchorus olitorius])

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 94/111 (84.68%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 2   KELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 61
           KELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHLRV
Sbjct: 47  KELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRV 106

Query: 62  RQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQA-MEESMW 112
           RQTASFS++G  P+SPSNSGSPSS+LM SQ++ MF+MDMVVDQA   ESMW
Sbjct: 107 RQTASFSHHGFGPSSPSNSGSPSSKLMNSQAKPMFDMDMVVDQASFGESMW 157

[Close]

BLAST of CsGy1G033290 vs. NCBI nr
Match: XP_002297935.1 (LOB domain-containing protein 4 [Populus trichocarpa] >PNT53363.1 hypothetical protein POPTR_001G081400v3 [Populus trichocarpa])

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 92/111 (82.88%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHLR
Sbjct: 58  LQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLR 117

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 112
           VRQTA+ SN+GLSP SPSNSGSPSSRLMGSQ + MF+MDMV   ++ ESMW
Sbjct: 118 VRQTATLSNHGLSPASPSNSGSPSSRLMGSQMKPMFDMDMVDHTSLGESMW 168

[Close]

BLAST of CsGy1G033290 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 149.8 bits (377), Expect = 9.7e-37
Identity = 80/113 (70.80%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELPIHQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QID LQ QLALAQAEVVHLR
Sbjct: 58  LQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLR 117

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-SRTMF-EMDMVVDQAMEESMW 112
           VRQ+ +F  +GL P SPS+SGSPSS+ +  Q ++ MF  MD+V + ++ ESMW
Sbjct: 118 VRQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

[Close]

BLAST of CsGy1G033290 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-19
Identity = 42/70 (60.00%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELP+HQR DAV+SLV+EANARVRDPVYGCVGAIS LQ+Q+  LQ QLA+AQAE++ ++
Sbjct: 53  LQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 112

Query: 61  VRQTASFSNY 71
           ++   +  ++
Sbjct: 113 MQNEPTLQSH 122

[Close]

BLAST of CsGy1G033290 vs. TAIR10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-17
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++EL  + R DAV S+VYEANAR++DPVYGCVG ISSL  Q++ LQTQLA AQAE++H+R
Sbjct: 60  LQELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of CsGy1G033290 vs. TAIR10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-14
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           + EL  HQR DAV+SL YEA ARVRDPVYGCVGAIS LQ Q+  LQ +L  A A++ H  
Sbjct: 56  LNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-- 115

Query: 61  VRQTASFSNYGLSPTSPSNSGS 83
                    YGLS ++    G+
Sbjct: 116 ---------YGLSTSAAGAPGN 126

[Close]

BLAST of CsGy1G033290 vs. TAIR10
Match: AT2G30340.1 (LOB domain-containing protein 13)

HSP 1 Score: 73.6 bits (179), Expect = 8.9e-14
Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 8   QRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASF 67
           QRGDA +SLVYEAN R+RDP+YGC+GAIS+LQH I +LQ++L   + E++  + ++  + 
Sbjct: 104 QRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTI 163

Query: 68  SN 70
           ++
Sbjct: 164 TS 165

[Close]

BLAST of CsGy1G033290 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-35
Identity = 80/113 (70.80%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELPIHQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QID LQ QLALAQAEVVHLR
Sbjct: 58  LQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLR 117

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-SRTMF-EMDMVVDQAMEESMW 112
           VRQ+ +F  +GL P SPS+SGSPSS+ +  Q ++ MF  MD+V + ++ ESMW
Sbjct: 118 VRQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

[Close]

BLAST of CsGy1G033290 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 4.3e-18
Identity = 42/70 (60.00%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELP+HQR DAV+SLV+EANARVRDPVYGCVGAIS LQ+Q+  LQ QLA+AQAE++ ++
Sbjct: 53  LQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 112

Query: 61  VRQTASFSNY 71
           ++   +  ++
Sbjct: 113 MQNEPTLQSH 122

[Close]

BLAST of CsGy1G033290 vs. Swiss-Prot
Match: sp|Q9SA51|LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-16
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++EL  + R DAV S+VYEANAR++DPVYGCVG ISSL  Q++ LQTQLA AQAE++H+R
Sbjct: 60  LQELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of CsGy1G033290 vs. Swiss-Prot
Match: sp|Q9FML4|LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.2e-13
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           + EL  HQR DAV+SL YEA ARVRDPVYGCVGAIS LQ Q+  LQ +L  A A++ H  
Sbjct: 56  LNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-- 115

Query: 61  VRQTASFSNYGLSPTSPSNSGS 83
                    YGLS ++    G+
Sbjct: 116 ---------YGLSTSAAGAPGN 126

[Close]

BLAST of CsGy1G033290 vs. Swiss-Prot
Match: sp|Q9AT61|LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-12
Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 8   QRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASF 67
           QRGDA +SLVYEAN R+RDP+YGC+GAIS+LQH I +LQ++L   + E++  + ++  + 
Sbjct: 104 QRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTI 163

Query: 68  SN 70
           ++
Sbjct: 164 TS 165

[Close]

BLAST of CsGy1G033290 vs. TrEMBL
Match: tr|A0A0A0LYG0|A0A0A0LYG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.8e-52
Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR
Sbjct: 60  LQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 119

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 112
           VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW
Sbjct: 120 VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of CsGy1G033290 vs. TrEMBL
Match: tr|A0A1S3CAK2|A0A1S3CAK2_CUCME (LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR
Sbjct: 60  LQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 119

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 112
           VRQTASFSNYGLSPTSPSNSGSPSSRL+GS SR MFEMDMVVDQA+E+SMW
Sbjct: 120 VRQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSMW 170

[Close]

BLAST of CsGy1G033290 vs. TrEMBL
Match: tr|A0A1R3H6G6|A0A1R3H6G6_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_30929 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.4e-43
Identity = 94/111 (84.68%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 2   KELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 61
           KELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHLRV
Sbjct: 47  KELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRV 106

Query: 62  RQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQA-MEESMW 112
           RQTASFS++G  P+SPSNSGSPSS+LM SQ++ MF+MDMVVDQA   ESMW
Sbjct: 107 RQTASFSHHGFGPSSPSNSGSPSSKLMNSQAKPMFDMDMVVDQASFGESMW 157

[Close]

BLAST of CsGy1G033290 vs. TrEMBL
Match: tr|B9GK49|B9GK49_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G081400v3 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 92/111 (82.88%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHLR
Sbjct: 58  LQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLR 117

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 112
           VRQTA+ SN+GLSP SPSNSGSPSSRLMGSQ + MF+MDMV   ++ ESMW
Sbjct: 118 VRQTATLSNHGLSPASPSNSGSPSSRLMGSQMKPMFDMDMVDHTSLGESMW 168

[Close]

BLAST of CsGy1G033290 vs. TrEMBL
Match: tr|A0A1R3HJG7|A0A1R3HJG7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18891 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.9e-42
Identity = 93/112 (83.04%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MKELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 60
           ++ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHLR
Sbjct: 58  LQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLR 117

Query: 61  VRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQA-MEESMW 112
           VRQTASFS++G  P SPSNSGSPSS+LM SQ++ MF+MDMVVDQA   ESMW
Sbjct: 118 VRQTASFSHHGFGPASPSNSGSPSSKLMNSQAKPMFDMDMVVDQASFGESMW 169

The following BLAST results are available for this feature:

BLAST of CsGy1G033290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145462.1	8.8e-52	98.20	PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus] >KGN66910.1 hy...	[more]
XP_008459081.1	2.4e-49	93.69	PREDICTED: LOB domain-containing protein 4 [Cucumis melo]	[more]
XP_022927419.1	4.2e-46	90.18	LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB do...	[more]
OMO65919.1	1.3e-42	84.68	hypothetical protein COLO4_30929 [Corchorus olitorius]	[more]
XP_002297935.1	1.7e-42	82.88	LOB domain-containing protein 4 [Populus trichocarpa] >PNT53363.1 hypothetical p...	[more]

BLAST of CsGy1G033290 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31320.1	9.7e-37	70.80	LOB domain-containing protein 4	[more]
AT2G30130.1	2.4e-19	60.00	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	1.7e-17	65.00	ASYMMETRIC LEAVES 2-like 9	[more]
AT5G63090.2	4.0e-14	51.22	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G30340.1	8.9e-14	50.00	LOB domain-containing protein 13	[more]

BLAST of CsGy1G033290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SHE9\|LBD4_ARATH	1.8e-35	70.80	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|Q8LBW3\|LBD12_ARATH	4.3e-18	60.00	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q9SA51\|LBD3_ARATH	3.1e-16	65.00	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
sp\|Q9FML4\|LOB_ARATH	7.2e-13	51.22	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
sp\|Q9AT61\|LBD13_ARATH	1.6e-12	50.00	LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 S...	[more]

BLAST of CsGy1G033290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYG0\|A0A0A0LYG0_CUCSA	5.8e-52	98.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=4 SV=1	[more]
tr\|A0A1S3CAK2\|A0A1S3CAK2_CUCME	1.6e-49	93.69	LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=4 SV=...	[more]
tr\|A0A1R3H6G6\|A0A1R3H6G6_9ROSI	8.4e-43	84.68	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_30929 PE=4 SV=1	[more]
tr\|B9GK49\|B9GK49_POPTR	1.1e-42	82.88	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G081400v3 PE=...	[more]
tr\|A0A1R3HJG7\|A0A1R3HJG7_COCAP	1.9e-42	83.04	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18891 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G033290.1	CsGy1G033290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..91
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..111
None	No IPR available	PANTHER	PTHR31301:SF58	SUBFAMILY NOT NAMED	coord: 1..111
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 2..53 e-value: 8.3E-16 score: 58.2
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 1..56 score: 11.686

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G033290	Cla009182	Watermelon (97103) v1	cgybwmB056
CsGy1G033290	Csa1G713680	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G033290	MELO3C021789	Melon (DHL92) v3.5.1	cgybmeB012
CsGy1G033290	ClCG01G009020	Watermelon (Charleston Gray)	cgybwcgB022
CsGy1G033290	CSPI01G34800	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G033290	CmaCh13G004470	Cucurbita maxima (Rimu)	cgybcmaB065
CsGy1G033290	CmoCh13G004810	Cucurbita moschata (Rifu)	cgybcmoB061
CsGy1G033290	Cp4.1LG20g05910	Cucurbita pepo (Zucchini)	cgybcpeB083
CsGy1G033290	MELO3C021789.2	Melon (DHL92) v3.6.1	cgybmedB029
CsGy1G033290	CsaV3_1G046670	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G033290	Cla97C01G009270	Watermelon (97103) v2	cgybwmbB011
CsGy1G033290	Bhi08G000780	Wax gourd	cgybwgoB028
CsGy1G033290	Carg21434	Silver-seed gourd	carcgybB0406

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G033290	Melon (DHL92) v3.5.1	cgybmeB032
CsGy1G033290	Melon (DHL92) v3.6.1	cgybmedB011
CsGy1G033290	Silver-seed gourd	carcgybB0459
CsGy1G033290	Cucurbita maxima (Rimu)	cgybcmaB096
CsGy1G033290	Cucurbita moschata (Rifu)	cgybcmoB090
CsGy1G033290	Cucurbita pepo (Zucchini)	cgybcpeB008
CsGy1G033290	Bottle gourd (USVL1VR-Ls)	cgyblsiB030