Cla009182 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009182
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALL); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB
Location	Chr1 : 24015872 .. 24019597 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGTCATCTCTCCTCTTAAATTTAATCACCTATAACACATATTAACTAACTTACCACCTTTCTTTCTTCATTTCCTCTAAACCCCATCTCTCTTTTTCATGTTTTTAAAACAAGCTGGAAGTTATATGTTCATGTTAACTTATCATTAAATAATGTTATGAGTTGTAGTCTTATCATTATCATTGCTGAATTAAAAAAAAAAAAAAAAAAATGGTTTGATTAAATAGTTTCTTTTTTTTTTTTTTCTCTCTCTCTTTTTGGGTTTCTCTTGGGCAGTGTATGAAAGTGGTTTAGGAATTTTGCAACAATCTTTGACCAAAACTATTCTAACTTTATCATGACTCTTTGGTTTGGCTGCAGTGTTCTTAGGCAGGATGTCAAAAGATTAATTATCAAAACTAATATGTATAAGGTTTAAATGTTTGAATCTCTTATTTATTTTATATTGTTGAATTAAAAATTAAAAAAGCTTTGATTTATTTGTTGTCATTTATTGTTACCAAAATACAGATTTTTTCTCCCTAAATATTTATTAAACTCTAAGAATTTTTAGATTATATATAGAATTTTTTTTCTTTTTTTTGACATTATGCAGAGTGGAGATCGAACATTTGAGATTGATATTATATGTCTAACGTGAGTAGAACTATGATCATTTTGACATTAGAACTTTATTGTCAACTCTCTTGTAAAAATGTTGACAAATTTTAGTTGAGTTACCATCACATGCTAATAACTACAAAGGAATCCATCACCAAAATATAATAATATAATTCAAATGTCAGGGATGTAATTGGAGTTTTAAAAGTTTCTAAGTAATACAAAGAATCAAATGTGTTCAATATATAATAACTAAATATATAATTAATATATTTAAATAAGATTATTTCTTTCTTTTTAATTAACAAATTTTAAAGAAAAGAAAATGGTGGCTATTGCTATCAACTTTAACGGTATAACCTTTCATTGCGACCGTTAATTAATTAATAAAATATTGTTGTGGAAAATACAAAAAGGTGTGTCTTTTCATTTAAGAAAAGCATCAAAATTTCTTTTTTTTTTTTCTTTTAAAAAAAAAGTTCAAACAACTCTTTGAAAAAAGAGTTAGTTTCAAGTCAAATTCATCATGTAGACCAAACAAATTAATGAAATTACAAAAGCAACCTTATAACTTTGGCTATTACTTTACAAACCTACTTGATTACAAATTTGTAAACATGTACCCTTTTATTAGTTTAAGAAAGTTAATATACACGTTAAATCAGGACATAGTTGACAACAAATGAAAATCACGGAGATCTTATTGTACTTATAACCAATTAAAATGAAGAACTTCAATTATAATATCATATAATTTTAATTTATAAGAAATGAAAAAAAAATAAAAATAAGTTGCTAACATGTTGGATTTTATTTATTTTTTTATTTTTTTTATCTTTTAGAAAAATATGTTAGTTTGGTTAAGAAAATATATAAAATGAATCAATTTTTCCATAAAAGCTATTAAGAAGAGAATATAGTTAACTAATAAATTTAAGGTCAACTTAGGTCATTAAAGGAGACTATAATTGATAAATTAATTAATTTTCAAATCTAAAATTTTAAATAAATTATCTCAAATCACATGCCTTTTGGATTTTAGCTTTTAACCTTCTCTCAATTTGCCTTGTACGTCATGTGATTTTTTTTTTTTTTTTTAAGTTTAATTAATAAATTTCTAGTTGTTAGAGGAAAAAAACATATATTTAAAGGTTTTTTTCAAATATAACAAAATGAAGCAAAATATTTACAAATATAGCAAAATTGTACTGTCTATCTGCGATAGATCCCGATAGATTGCAGTAGACTACTATCGTGACGCAGATAATAATCTATCGCGGTCTATCGCAGATAAACTGTGTATTTTGCTGTTAGTTGTAAATATTTTCAGCGATTTTGTCATTTAAGATAATTTTTTTATATTATATTTTAATTATTATTTTTTTAAAAAAAAAACATATATTTAATTTAGCTAAAAAAGAAGGGAAAAAATGTTTTATATGGACTTTTTGGGTTAATTGTGGGGAGCCACCCACCCCTTTTGCTTGTTTGTGGAGGGACAACCAACAAATAAAAACCAAATTAGAAACTACCATACCATCCTAACTTTTTATCATACAATTGAACTTAGAATATATTATAATATTGACCACTAGAATTTTGGTCTAAATTTTAGTTTGTTTGTTTACCTTCCAATATTTGTTTACTTTATAAAATAAACAATTAATTTGCATGTTGCCACATATTTTCTTTCAAATTTTTAACAAAAATTTATGATAAAAACATGTTATTTGTTTATTCCCTCTAATTACTGATACTTATTTAATAATCATTTGATATTTTTTAAAACTTAAATTTATAACCACTCTCCGCTTTGTTTAACTATATTTTTAACCAATGTTTTTGATAATTAACCCAAGTTTTGATAACTAAAAAAAATGAAAATAAATATTTTTTTTGTTTTTAAAATTTAGCTAGAAATTCAACTCTTTTATTCAAGAAATATGTAAATTATTATAAAAAAAATCCAAAACAAATAGGATTATTTGTTAAAAACAAAAAATAAAACCCAAATGGCTACTAAACCGGGCTTAAATGTCTAAGATTAGTTGAGAAAGTTTTTTTTTTTTTTTTTTTATTGCAAATAAATATTTTTTTTGTTTTTAAAATTTAGCTAGAAATTCAACTCTTTTATTCAAGAAATATGTAAATTATTATAAAAAAAATCCAAAACAAATAGGATTATTTGTTAAAAACAAAAAATAAAACCCAAATGGCTACTAAACCGGGCTTAAATGTCTAAGATTAGTTGAGAAAGTTTTTTTTTTTTTTTTTCATTGCAAACTTTAGGGCCTAAAACAAAATATTTGAAAGTTAACTAACTAAACAACAATATTTAAAAAATTAGAGATGTAAACTCGAAATAAGGGAGGAAGTTCATAGATTAAAGAAAATATATATGAAGTTAACTTAAAATTTAATTTAACCATGATATTCTATTTTATTATAAGAAGATTCTAATCTAACTTGTAGGTTAAAAACAATTCTCCGATGAAACCACGGCTAAACAAAATTCTATCTCATAAGTTTAAATCTTCTTATTCTCATGTATATCTTTCTATTTCAAAAAATAAAAAATAAAAAAGTTGACGTTATTGTGAACGTTGCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA

mRNA sequence

ATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA

Coding sequence (CDS)

ATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA

Protein sequence

MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW

Homology

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BLAST of Cla009182 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.2e-66
Identity = 127/171 (74.27%), Postives = 145/171 (84.80%), Query Frame = 1


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E+ RKQG    A+PCAACKLLRRRC ++CVF+PYFPAD+P KFANVH+VFGASNVNKMLQ
Sbjct: 3   ESSRKQGA---ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELPIHQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVHLRVR
Sbjct: 63  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMF-EMDMVVDQAMGDSMW 173
           Q+  F  +GL P SPS+SGSPSS+ +  Q ++ MF  MD+V + ++G+SMW
Sbjct: 123 QSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

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BLAST of Cla009182 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 182.6 bits (462), Expect = 3.7e-45
Identity = 83/113 (73.45%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 11  GGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 70
           GG G++PCA+CKLLRRRC ++C+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 71  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 124
            DAV+SLV+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

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BLAST of Cla009182 vs. Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.6e-40
Identity = 88/165 (53.33%), Postives = 107/165 (64.85%), Query Frame = 1


Query: 12  GTGAAPCAACKLLRRRCGEE-CVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 71
           G   +PCA CKLLRR+C ++ CVFAPYFPA +P+KFA VHK+FGASNVNKMLQEL  + R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 72  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR---QTAP 131
            DAV S+VYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R      T P
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 132 FSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
                 + T PSN    S            +M +      GD +W
Sbjct: 129 PPYTASTVTFPSNKDFYSD----------IDMAVAYTDDAGDFLW 163

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BLAST of Cla009182 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 9.8e-38
Identity = 84/171 (49.12%), Postives = 104/171 (60.82%), Query Frame = 1


Query: 17  PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSS 76
           PCAACKLLRRRC +EC F+PYF   +PHKFA+VHKVFGASNV+KML E+P  QR DA +S
Sbjct: 45  PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANS 104

Query: 77  LVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR------------Q 136
           LVYEAN R+RDPVYGC+GAIS+LQQQ+ ALQ +L   ++E++  + R            Q
Sbjct: 105 LVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQ 164

Query: 137 TAPFSNYG------LSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGD 170
            A F N G        P  P+    P++    S S  +F      D   G+
Sbjct: 165 VAGFHNSGGVSVIAPPPQRPTTPPQPTTAHPPSPSSCVFSQPTTRDLEYGN 215

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BLAST of Cla009182 vs. Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-37
Identity = 78/140 (55.71%), Postives = 93/140 (66.43%), Query Frame = 1


Query: 16  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVS 75
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 76  SLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSP 135
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 129

Query: 136 TSPSNSGSPSSRLMGSQSRP 156
           ++    G+    +   Q  P
Sbjct: 130 SAAGAPGNVVDLVFQPQPLP 138

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BLAST of Cla009182 vs. TrEMBL
Match: A0A0A0LYG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G713680 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.6e-87
Identity = 165/172 (95.93%), Postives = 166/172 (96.51%), Query Frame = 1


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSPSNSGSPSSRLMGSQSR MFEMDMVVDQAM +SMW
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 170

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BLAST of Cla009182 vs. TrEMBL
Match: B9GK49_POPTR (LOB domain protein 3 OS=Populus trichocarpa GN=POPTR_0001s11610g PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 6.3e-76
Identity = 143/169 (84.62%), Postives = 154/169 (91.12%), Query Frame = 1


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E GRKQG     APCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   EGGRKQGA---PAPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR
Sbjct: 63  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           QTA  SN+GLSP SPSNSGSPSSRLMGSQ +PMF+MDMV   ++G+SMW
Sbjct: 123 QTATLSNHGLSPASPSNSGSPSSRLMGSQMKPMFDMDMVDHTSLGESMW 168

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BLAST of Cla009182 vs. TrEMBL
Match: A0A061GE84_THECC (LOB domain-containing protein 4 isoform 1 OS=Theobroma cacao GN=TCM_029315 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-75
Identity = 142/170 (83.53%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E+GRKQG    A+PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   ESGRKQGA---ASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR
Sbjct: 63  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQA-MGDSMW 173
           QTA FS++G  P SPSNSGSPSS+LMGSQ++PMF++DMVVD A +G+SMW
Sbjct: 123 QTASFSHHGFGPASPSNSGSPSSKLMGSQAKPMFDVDMVVDHASLGESMW 169

[Close]

BLAST of Cla009182 vs. TrEMBL
Match: A0A0B0NB74_GOSAR (LOB domain-containing 4-like protein OS=Gossypium arboreum GN=F383_07315 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.1e-75
Identity = 142/170 (83.53%), Postives = 157/170 (92.35%), Query Frame = 1


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E+GRKQG    A PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   ESGRKQGA---APPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQIDALQTQLA+AQAEVVHLRVR
Sbjct: 63  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAMAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQA-MGDSMW 173
           QTA FS++G  P SPSNSGSPSS+LMGSQ++P+F+MDMVVDQA  G+SMW
Sbjct: 123 QTASFSHHGFGPGSPSNSGSPSSKLMGSQAKPIFDMDMVVDQASFGESMW 169

[Close]

BLAST of Cla009182 vs. TrEMBL
Match: A0A0D2UMG2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G149900 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-74
Identity = 141/170 (82.94%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E+GRKQG    A PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   ESGRKQGA---APPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQIDALQTQLA+AQAEVVHLRVR
Sbjct: 63  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAMAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQA-MGDSMW 173
           QTA FS++G  P SPSNSGSPSS+LMGSQ++P+F+MDMVVD A  G+SMW
Sbjct: 123 QTASFSHHGFGPGSPSNSGSPSSKLMGSQAKPIFDMDMVVDHASFGESMW 169

[Close]

BLAST of Cla009182 vs. NCBI nr
Match: gi|449455443|ref|XP_004145462.1| (PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 5.1e-87
Identity = 165/172 (95.93%), Postives = 166/172 (96.51%), Query Frame = 1


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSPSNSGSPSSRLMGSQSR MFEMDMVVDQAM +SMW
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of Cla009182 vs. NCBI nr
Match: gi|659118362|ref|XP_008459081.1| (PREDICTED: LOB domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 325.5 bits (833), Expect = 5.7e-86
Identity = 163/172 (94.77%), Postives = 165/172 (95.93%), Query Frame = 1


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSPSNSGSPSSRL+GS SR MFEMDMVVDQA+ DSMW
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSMW 170

[Close]

BLAST of Cla009182 vs. NCBI nr
Match: gi|224053699|ref|XP_002297935.1| (LOB domain protein 3 [Populus trichocarpa])

HSP 1 Score: 291.6 bits (745), Expect = 9.1e-76
Identity = 143/169 (84.62%), Postives = 154/169 (91.12%), Query Frame = 1


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E GRKQG     APCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   EGGRKQGA---PAPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR
Sbjct: 63  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           QTA  SN+GLSP SPSNSGSPSSRLMGSQ +PMF+MDMV   ++G+SMW
Sbjct: 123 QTATLSNHGLSPASPSNSGSPSSRLMGSQMKPMFDMDMVDHTSLGESMW 168

[Close]

BLAST of Cla009182 vs. NCBI nr
Match: gi|590621720|ref|XP_007024850.1| (LOB domain-containing protein 4 isoform 1 [Theobroma cacao])

HSP 1 Score: 290.4 bits (742), Expect = 2.0e-75
Identity = 142/170 (83.53%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E+GRKQG    A+PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   ESGRKQGA---ASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR
Sbjct: 63  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQA-MGDSMW 173
           QTA FS++G  P SPSNSGSPSS+LMGSQ++PMF++DMVVD A +G+SMW
Sbjct: 123 QTASFSHHGFGPASPSNSGSPSSKLMGSQAKPMFDVDMVVDHASLGESMW 169

[Close]

BLAST of Cla009182 vs. NCBI nr
Match: gi|728830652|gb|KHG10095.1| (LOB domain-containing 4 -like protein [Gossypium arboreum])

HSP 1 Score: 289.3 bits (739), Expect = 4.5e-75
Identity = 142/170 (83.53%), Postives = 157/170 (92.35%), Query Frame = 1


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E+GRKQG    A PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   ESGRKQGA---APPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQIDALQTQLA+AQAEVVHLRVR
Sbjct: 63  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAMAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQA-MGDSMW 173
           QTA FS++G  P SPSNSGSPSS+LMGSQ++P+F+MDMVVDQA  G+SMW
Sbjct: 123 QTASFSHHGFGPGSPSNSGSPSSKLMGSQAKPIFDMDMVVDQASFGESMW 169

The following BLAST results are available for this feature:

BLAST of Cla009182 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD4_ARATH	2.2e-66	74.27	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD12_ARATH	3.7e-45	73.45	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD3_ARATH	3.6e-40	53.33	LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1	[more]
LBD15_ARATH	9.8e-38	49.12	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]
LOB_ARATH	4.9e-37	55.71	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1	[more]

BLAST of Cla009182 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYG0_CUCSA	3.6e-87	95.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G713680 PE=4 SV=1	[more]
B9GK49_POPTR	6.3e-76	84.62	LOB domain protein 3 OS=Populus trichocarpa GN=POPTR_0001s11610g PE=4 SV=1	[more]
A0A061GE84_THECC	1.4e-75	83.53	LOB domain-containing protein 4 isoform 1 OS=Theobroma cacao GN=TCM_029315 PE=4 ...	[more]
A0A0B0NB74_GOSAR	3.1e-75	83.53	LOB domain-containing 4-like protein OS=Gossypium arboreum GN=F383_07315 PE=4 SV...	[more]
A0A0D2UMG2_GOSRA	1.2e-74	82.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G149900 PE=4 SV=1	[more]

BLAST of Cla009182 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455443\|ref\|XP_004145462.1\|	5.1e-87	95.93	PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus]	[more]
gi\|659118362\|ref\|XP_008459081.1\|	5.7e-86	94.77	PREDICTED: LOB domain-containing protein 4 [Cucumis melo]	[more]
gi\|224053699\|ref\|XP_002297935.1\|	9.1e-76	84.62	LOB domain protein 3 [Populus trichocarpa]	[more]
gi\|590621720\|ref\|XP_007024850.1\|	2.0e-75	83.53	LOB domain-containing protein 4 isoform 1 [Theobroma cacao]	[more]
gi\|728830652\|gb\|KHG10095.1\|	4.5e-75	83.53	LOB domain-containing 4 -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048507	meristem development
biological_process	GO:0007389	pattern specification process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009182	Cla009182.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 17..114 score: 5.1
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 16..117 score: 26
None	No IPR available	unknown	Coil	Coil	coord: 96..123 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..172 score: 4.5E
None	No IPR available	PANTHER	PTHR31301:SF15	LOB DOMAIN-CONTAINING PROTEIN 4	coord: 1..172 score: 4.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009182	Cla97C01G009270	Watermelon (97103) v2	wmwmbB237
Cla009182	Csa1G713680	Cucumber (Chinese Long) v2	cuwmB056
Cla009182	MELO3C021789	Melon (DHL92) v3.5.1	mewmB158
Cla009182	ClCG01G009020	Watermelon (Charleston Gray)	wcgwmB144
Cla009182	CSPI01G34800	Wild cucumber (PI 183967)	cpiwmB059
Cla009182	Cucsa.236600	Cucumber (Gy14) v1	cgywmB442
Cla009182	CmaCh13G004470	Cucurbita maxima (Rimu)	cmawmB203
Cla009182	CmoCh13G004810	Cucurbita moschata (Rifu)	cmowmB190
Cla009182	Lsi02G010150	Bottle gourd (USVL1VR-Ls)	lsiwmB202
Cla009182	Cp4.1LG20g05910	Cucurbita pepo (Zucchini)	cpewmB514
Cla009182	CsGy1G033290	Cucumber (Gy14) v2	cgybwmB056
Cla009182	MELO3C021789.2	Melon (DHL92) v3.6.1	medwmB153
Cla009182	Carg21434	Silver-seed gourd	carwmB0395
Cla009182	CsaV3_1G046670	Cucumber (Chinese Long) v3	cucwmB062
Cla009182	Bhi08G000780	Wax gourd	wgowmB508

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009182	Cucurbita moschata (Rifu)	cmowmB373
Cla009182	Cucurbita pepo (Zucchini)	cpewmB040
Cla009182	Silver-seed gourd	carwmB0447
Cla009182	Cucurbita maxima (Rimu)	cmawmB380