Cp4.1LG20g05910 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g05910
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	LOB domain protein
Location	Cp4.1LG20 : 3637867 .. 3640065 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAGAGAGAGAGAGAGAGTTCAGGAGAGGCGGAGTGTCCAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACGTGGCAGCGAGAGAGATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGCGTATTCGCGCCATACTTCCCCGCGGACCAACCCCATAAGTTCGCCAATGTCCACAAGGTCTTCGGCGCTAGCAACGTCAACAAAATGCTCCAGGTTCCTTAACTCGATCACCTTTTTCTTTTCTTTTACTCGAACCTCCGACCTCTAAATCGAGACCCAAATTGGGCTATCTCGAGCCGTGTGTGAACACGGGTTATAAACTATTCCGTCTTTTAAAGAACATGTCAAAAGGTGAATTATGAAATTTGAATTTCTATGTTTATATTAAAACACTGTAAGAACTTTAGAATATGTAACTTTATTGGAAACATTATAATGAAAATGTTGACTAATTTAGGTTAGGTTATAATCAATTATTTTCAAAAGAATCTTTTTTTTTTTAATTAATTAATTAATTTTAAAGGAAATAAAATGGTTCTTTCAGACCGTTAATAAATTAATTAAATATTGATGTGGAAAATATAAAAAGAATATCTTTGAATTTAAGGAAAAAACAAATATACATATTCAAACAACTCTTTGAAAAAAGAGATTTTATAGTTTCTATGTTGACCCAACAAATTCATTAAATTACAAAACTGGCCCAAATCTTACTTAAATTTGTAAACATGCCCTTAGGGATCATATGTTCTAAGAGTCCGATCAATTCAGACTACCTAACTCAAACCATAAAATTGACTTGGGTTGAATGTTCGAAAAATCGAACAATTTTATGTCAGTTTACGGGTTGACTTTTTTTGGTCGGGCAACCCGGAAATAGGGTTACAATTCATCCCAGAGTTGGATTGAGCTAACCTAGAGTACCGACAACTCAATCCAACTTAACCTAGAGTTGGGTTTGCTATGAACTTTGTTCCAGTTGCTCGGATCACCAATCTAAACAACCCCAAATTTCAGGTTGGTCTAAAAAAATTCTCCGACCCGACCTAACCCAATAATATACCCGTTAAATAACAAATAAAAAACATATATTTAAGCTAAAAAAAGGAGGGAAATTATGTTTTTTTGTGGACTTTTTGGTTAATTTTGGGGACCCACTAATCCCATTTGCTTCTTTGGATGGAGACAACCATCAAATAAAGACCAAATTAGAAACCACCAAACCATCCTTTATTAACTAAATAACAAAAATATTGCACAAAAAAGTTTAAAAAAAAATTAATAAGAAGTTTCTATAATTAAAAAATAAGATAGTGGTCGAACTTTAGGTTAAAAAACTCCGCACCTAGCTCGGACAAAATCTCGACAAAACAAAGTTCAACCTAATATTTTCTTTTTGTCGGGAAAAAAGATTGACGTAGTAAATATTACAGGAGTTGCCACTTCACCAGCGAGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGAGTGCGCGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGATTATAATATTATTATTTACCCAAAATCCCATTTACTTGGAGATTTAGTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTCAATTTGGCTTTCATTGGGTTGTTGGCCATTTGCTATCTTCTATACTACTTACTTACAACTTTCGTGTATGCCGACCTGAGCTCAGCTCAAGCAGTCAGGTAATATCTTCCTTTTCGGGACGTAGGATTGAACCTATTTATAATATTCTACTTTTAAGAAACTCGTATATAATATATTATCGTTATGTTATATTGTCGTGATGAACGACTTTATTCTTTGATATTGTTGACGAGTCTGTGTCGATTATTTTTACCCAAATAAATTAAAAGTA

mRNA sequence

TATAGAGAGAGAGAGAGAGTTCAGGAGAGGCGGAGTGTCCAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACGTGGCAGCGAGAGAGATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGCGTATTCGCGCCATACTTCCCCGCGGACCAACCCCATAAGTTCGCCAATGTCCACAAGGTCTTCGGCGCTAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGAGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGAGTGCGCGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGATTATAATATTATTATTTACCCAAAATCCCATTTACTTGGAGATTTAGTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTCAATTTGGCTTTCATTGGGTTGTTGGCCATTTGCTATCTTCTATACTACTTACTTACAACTTTCGTGTATGCCGACCTGAGCTCAGCTCAAGCAGTCAGGTAATATCTTCCTTTTCGGGACGTAGGATTGAACCTATTTATAATATTCTACTTTTAAGAAACTCGTATATAATATATTATCGTTATGTTATATTGTCGTGATGAACGACTTTATTCTTTGATATTGTTGACGAGTCTGTGTCGATTATTTTTACCCAAATAAATTAAAAGTA

Coding sequence (CDS)

ATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGCGTATTCGCGCCATACTTCCCCGCGGACCAACCCCATAAGTTCGCCAATGTCCACAAGGTCTTCGGCGCTAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGAGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGAGTGCGCGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGA

Protein sequence

MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW

Homology

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BLAST of Cp4.1LG20g05910 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.3e-65
Identity = 123/167 (73.65%), Postives = 145/167 (86.83%), Query Frame = 1


Query: 8   RKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPL 67
           RKQG   A+PCAACKLLRRRC ++CVF+PYFPAD+P KFANVH+VFGASNVNKMLQELP+
Sbjct: 6   RKQGA--ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPI 65

Query: 68  HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTAS 127
           HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVHLRVRQ+ +
Sbjct: 66  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 125

Query: 128 FSNYGLSPTSPGNSGSPSSRLMGSQSSRPMF-EMDMVVDQAMGDSVW 174
           F  +GL P SP +SGSPSS+ +  Q ++ MF  MD+V + ++G+S+W
Sbjct: 126 FPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

[Close]

BLAST of Cp4.1LG20g05910 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 8.3e-45
Identity = 83/121 (68.60%), Postives = 104/121 (85.95%), Query Frame = 1


Query: 11  GGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQR 70
           GG G++PCA+CKLLRRRC ++C+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 71  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSN 130
            DAV+SLV+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++   +  +
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQS 121

Query: 131 Y 132
           +
Sbjct: 122 H 122

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BLAST of Cp4.1LG20g05910 vs. Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-39
Identity = 79/119 (66.39%), Postives = 100/119 (84.03%), Query Frame = 1


Query: 7   LRKQG---GGGAAPCAACKLLRRRCGEE-CVFAPYFPADQPHKFANVHKVFGASNVNKML 66
           +R++G   G   +PCA CKLLRR+C ++ CVFAPYFPA +P+KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 67  QELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLR 122
           QEL  + R DAV S+VYEANAR++DPVYGCVG ISSL +Q+++LQTQLA AQAE++H+R
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of Cp4.1LG20g05910 vs. Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.8e-37
Identity = 77/128 (60.16%), Postives = 93/128 (72.66%), Query Frame = 1


Query: 16  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVS 75
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 76  SLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSP 135
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 126

Query: 136 TSPGNSGS 144
           ++ G  G+
Sbjct: 130 SAAGAPGN 126

[Close]

BLAST of Cp4.1LG20g05910 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-36
Identity = 83/167 (49.70%), Postives = 107/167 (64.07%), Query Frame = 1


Query: 17  PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSS 76
           PCAACKLLRRRC +EC F+PYF   +PHKFA+VHKVFGASNV+KML E+P  QR DA +S
Sbjct: 45  PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANS 104

Query: 77  LVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVR------------Q 136
           LVYEAN R+RDPVYGC+GAIS+LQQQ+ +LQ +L   ++E++  + R            Q
Sbjct: 105 LVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQ 164

Query: 137 TASFSNYG---------LSPTSP-----GNSGSPSSRLMGSQSSRPM 158
            A F N G           PT+P      +  SPSS +    ++R +
Sbjct: 165 VAGFHNSGGVSVIAPPPQRPTTPPQPTTAHPPSPSSCVFSQPTTRDL 211

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BLAST of Cp4.1LG20g05910 vs. TrEMBL
Match: A0A0A0LYG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G713680 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.0e-82
Identity = 162/173 (93.64%), Postives = 166/173 (95.95%), Query Frame = 1


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQG GGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENG-RKQG-GGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSP NSGSPSSRLMGSQ SR MFEMDMVVDQAM +S+W
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-SRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of Cp4.1LG20g05910 vs. TrEMBL
Match: M5WJ97_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012322mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 7.3e-72
Identity = 142/173 (82.08%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 4   ENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           ENG RKQG    +PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   ENGSRKQGA--PSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVR 123
           ELP HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQTQLALAQAEVVHLRVR
Sbjct: 63  ELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVR 122

Query: 124 QTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQ---AMGDSVW 174
           QTASFSN+GLSP SP NSGSPSS+ MGSQ SRP+F+MDM+VD     +G+S+W
Sbjct: 123 QTASFSNHGLSPASPSNSGSPSSKFMGSQ-SRPIFDMDMMVDHTSLGLGESMW 172

[Close]

BLAST of Cp4.1LG20g05910 vs. TrEMBL
Match: B9GK49_POPTR (LOB domain protein 3 OS=Populus trichocarpa GN=POPTR_0001s11610g PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.8e-71
Identity = 139/170 (81.76%), Postives = 154/170 (90.59%), Query Frame = 1


Query: 4   ENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           + G RKQG    APCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 2   KEGGRKQGA--PAPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 61

Query: 64  ELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVR 123
           ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHLRVR
Sbjct: 62  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 121

Query: 124 QTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           QTA+ SN+GLSP SP NSGSPSSRLMGSQ  +PMF+MDMV   ++G+S+W
Sbjct: 122 QTATLSNHGLSPASPSNSGSPSSRLMGSQ-MKPMFDMDMVDHTSLGESMW 168

[Close]

BLAST of Cp4.1LG20g05910 vs. TrEMBL
Match: A0A061GE84_THECC (LOB domain-containing protein 4 isoform 1 OS=Theobroma cacao GN=TCM_029315 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-70
Identity = 138/167 (82.63%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 8   RKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPL 67
           RKQG   A+PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQELP+
Sbjct: 6   RKQGA--ASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPV 65

Query: 68  HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTAS 127
           HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHLRVRQTAS
Sbjct: 66  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAS 125

Query: 128 FSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQA-MGDSVW 174
           FS++G  P SP NSGSPSS+LMGSQ ++PMF++DMVVD A +G+S+W
Sbjct: 126 FSHHGFGPASPSNSGSPSSKLMGSQ-AKPMFDVDMVVDHASLGESMW 169

[Close]

BLAST of Cp4.1LG20g05910 vs. TrEMBL
Match: A0A0B0NB74_GOSAR (LOB domain-containing 4-like protein OS=Gossypium arboreum GN=F383_07315 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.3e-70
Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 1


Query: 8   RKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPL 67
           RKQG   A PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQELP+
Sbjct: 6   RKQGA--APPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPV 65

Query: 68  HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTAS 127
           HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID+LQTQLA+AQAEVVHLRVRQTAS
Sbjct: 66  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAMAQAEVVHLRVRQTAS 125

Query: 128 FSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQA-MGDSVW 174
           FS++G  P SP NSGSPSS+LMGSQ ++P+F+MDMVVDQA  G+S+W
Sbjct: 126 FSHHGFGPGSPSNSGSPSSKLMGSQ-AKPIFDMDMVVDQASFGESMW 169

[Close]

BLAST of Cp4.1LG20g05910 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 248.1 bits (632), Expect = 4.1e-66
Identity = 123/167 (73.65%), Postives = 145/167 (86.83%), Query Frame = 1


Query: 8   RKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPL 67
           RKQG   A+PCAACKLLRRRC ++CVF+PYFPAD+P KFANVH+VFGASNVNKMLQELP+
Sbjct: 6   RKQGA--ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPI 65

Query: 68  HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTAS 127
           HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVHLRVRQ+ +
Sbjct: 66  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 125

Query: 128 FSNYGLSPTSPGNSGSPSSRLMGSQSSRPMF-EMDMVVDQAMGDSVW 174
           F  +GL P SP +SGSPSS+ +  Q ++ MF  MD+V + ++G+S+W
Sbjct: 126 FPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

[Close]

BLAST of Cp4.1LG20g05910 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 181.4 bits (459), Expect = 4.7e-46
Identity = 83/121 (68.60%), Postives = 104/121 (85.95%), Query Frame = 1


Query: 11  GGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQR 70
           GG G++PCA+CKLLRRRC ++C+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 71  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSN 130
            DAV+SLV+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++   +  +
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQS 121

Query: 131 Y 132
           +
Sbjct: 122 H 122

[Close]

BLAST of Cp4.1LG20g05910 vs. TAIR10
Match: AT1G16530.1 (AT1G16530.1 ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 164.1 bits (414), Expect = 7.8e-41
Identity = 79/119 (66.39%), Postives = 100/119 (84.03%), Query Frame = 1


Query: 7   LRKQG---GGGAAPCAACKLLRRRCGEE-CVFAPYFPADQPHKFANVHKVFGASNVNKML 66
           +R++G   G   +PCA CKLLRR+C ++ CVFAPYFPA +P+KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 67  QELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLR 122
           QEL  + R DAV S+VYEANAR++DPVYGCVG ISSL +Q+++LQTQLA AQAE++H+R
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of Cp4.1LG20g05910 vs. TAIR10
Match: AT5G63090.2 (AT5G63090.2 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-38
Identity = 77/128 (60.16%), Postives = 93/128 (72.66%), Query Frame = 1


Query: 16  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVS 75
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 76  SLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSP 135
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 126

Query: 136 TSPGNSGS 144
           ++ G  G+
Sbjct: 130 SAAGAPGN 126

[Close]

BLAST of Cp4.1LG20g05910 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 154.1 bits (388), Expect = 8.0e-38
Identity = 83/167 (49.70%), Postives = 107/167 (64.07%), Query Frame = 1


Query: 17  PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSS 76
           PCAACKLLRRRC +EC F+PYF   +PHKFA+VHKVFGASNV+KML E+P  QR DA +S
Sbjct: 45  PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANS 104

Query: 77  LVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVR------------Q 136
           LVYEAN R+RDPVYGC+GAIS+LQQQ+ +LQ +L   ++E++  + R            Q
Sbjct: 105 LVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQ 164

Query: 137 TASFSNYG---------LSPTSP-----GNSGSPSSRLMGSQSSRPM 158
            A F N G           PT+P      +  SPSS +    ++R +
Sbjct: 165 VAGFHNSGGVSVIAPPPQRPTTPPQPTTAHPPSPSSCVFSQPTTRDL 211

[Close]

BLAST of Cp4.1LG20g05910 vs. NCBI nr
Match: gi|449455443|ref|XP_004145462.1| (PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 2.9e-82
Identity = 162/173 (93.64%), Postives = 166/173 (95.95%), Query Frame = 1


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQG GGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENG-RKQG-GGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSP NSGSPSSRLMGSQ SR MFEMDMVVDQAM +S+W
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-SRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of Cp4.1LG20g05910 vs. NCBI nr
Match: gi|659118362|ref|XP_008459081.1| (PREDICTED: LOB domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 3.2e-81
Identity = 160/173 (92.49%), Postives = 165/173 (95.38%), Query Frame = 1


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQG GGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENG-RKQG-GGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSP NSGSPSSRL+GS  SR MFEMDMVVDQA+ DS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLVGSH-SRAMFEMDMVVDQAIEDSMW 170

[Close]

BLAST of Cp4.1LG20g05910 vs. NCBI nr
Match: gi|595874906|ref|XP_007212152.1| (hypothetical protein PRUPE_ppa012322mg [Prunus persica])

HSP 1 Score: 278.1 bits (710), Expect = 1.0e-71
Identity = 142/173 (82.08%), Postives = 155/173 (89.60%), Query Frame = 1


Query: 4   ENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           ENG RKQG    +PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   ENGSRKQGA--PSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVR 123
           ELP HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQTQLALAQAEVVHLRVR
Sbjct: 63  ELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVR 122

Query: 124 QTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQ---AMGDSVW 174
           QTASFSN+GLSP SP NSGSPSS+ MGSQ SRP+F+MDM+VD     +G+S+W
Sbjct: 123 QTASFSNHGLSPASPSNSGSPSSKFMGSQ-SRPIFDMDMMVDHTSLGLGESMW 172

[Close]

BLAST of Cp4.1LG20g05910 vs. NCBI nr
Match: gi|224053699|ref|XP_002297935.1| (LOB domain protein 3 [Populus trichocarpa])

HSP 1 Score: 276.2 bits (705), Expect = 4.0e-71
Identity = 139/170 (81.76%), Postives = 154/170 (90.59%), Query Frame = 1


Query: 4   ENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           + G RKQG    APCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 2   KEGGRKQGA--PAPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 61

Query: 64  ELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVR 123
           ELP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHLRVR
Sbjct: 62  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 121

Query: 124 QTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           QTA+ SN+GLSP SP NSGSPSSRLMGSQ  +PMF+MDMV   ++G+S+W
Sbjct: 122 QTATLSNHGLSPASPSNSGSPSSRLMGSQ-MKPMFDMDMVDHTSLGESMW 168

[Close]

BLAST of Cp4.1LG20g05910 vs. NCBI nr
Match: gi|590621720|ref|XP_007024850.1| (LOB domain-containing protein 4 isoform 1 [Theobroma cacao])

HSP 1 Score: 274.2 bits (700), Expect = 1.5e-70
Identity = 138/167 (82.63%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 8   RKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPL 67
           RKQG   A+PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQELP+
Sbjct: 6   RKQGA--ASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPV 65

Query: 68  HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTAS 127
           HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHLRVRQTAS
Sbjct: 66  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAS 125

Query: 128 FSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQA-MGDSVW 174
           FS++G  P SP NSGSPSS+LMGSQ ++PMF++DMVVD A +G+S+W
Sbjct: 126 FSHHGFGPASPSNSGSPSSKLMGSQ-AKPMFDVDMVVDHASLGESMW 169

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g05910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD4_ARATH	7.3e-65	73.65	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD12_ARATH	8.3e-45	68.60	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD3_ARATH	1.4e-39	66.39	LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1	[more]
LOB_ARATH	3.8e-37	60.16	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1	[more]
LBD15_ARATH	1.4e-36	49.70	LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2	[more]

BLAST of Cp4.1LG20g05910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYG0_CUCSA	2.0e-82	93.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G713680 PE=4 SV=1	[more]
M5WJ97_PRUPE	7.3e-72	82.08	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012322mg PE=4 SV=1	[more]
B9GK49_POPTR	2.8e-71	81.76	LOB domain protein 3 OS=Populus trichocarpa GN=POPTR_0001s11610g PE=4 SV=1	[more]
A0A061GE84_THECC	1.1e-70	82.63	LOB domain-containing protein 4 isoform 1 OS=Theobroma cacao GN=TCM_029315 PE=4 ...	[more]
A0A0B0NB74_GOSAR	2.3e-70	82.63	LOB domain-containing 4-like protein OS=Gossypium arboreum GN=F383_07315 PE=4 SV...	[more]

BLAST of Cp4.1LG20g05910 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31320.1	4.1e-66	73.65	LOB domain-containing protein 4	[more]
AT2G30130.1	4.7e-46	68.60	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	7.8e-41	66.39	ASYMMETRIC LEAVES 2-like 9	[more]
AT5G63090.2	2.1e-38	60.16	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	8.0e-38	49.70	LOB domain-containing protein 15	[more]

BLAST of Cp4.1LG20g05910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455443\|ref\|XP_004145462.1\|	2.9e-82	93.64	PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus]	[more]
gi\|659118362\|ref\|XP_008459081.1\|	3.2e-81	92.49	PREDICTED: LOB domain-containing protein 4 [Cucumis melo]	[more]
gi\|595874906\|ref\|XP_007212152.1\|	1.0e-71	82.08	hypothetical protein PRUPE_ppa012322mg [Prunus persica]	[more]
gi\|224053699\|ref\|XP_002297935.1\|	4.0e-71	81.76	LOB domain protein 3 [Populus trichocarpa]	[more]
gi\|590621720\|ref\|XP_007024850.1\|	1.5e-70	82.63	LOB domain-containing protein 4 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048507	meristem development
biological_process	GO:0007389	pattern specification process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g05910.1	Cp4.1LG20g05910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 17..114 score: 3.9
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 16..117 score: 2
None	No IPR available	unknown	Coil	Coil	coord: 96..123 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 5..173 score: 1.3E
None	No IPR available	PANTHER	PTHR31301:SF15	LOB DOMAIN-CONTAINING PROTEIN 4	coord: 5..173 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g05910	Cucsa.236600	Cucumber (Gy14) v1	cgycpeB0625
Cp4.1LG20g05910	CmaCh13G004470	Cucurbita maxima (Rimu)	cmacpeB234
Cp4.1LG20g05910	CmoCh13G004810	Cucurbita moschata (Rifu)	cmocpeB201
Cp4.1LG20g05910	Cla009182	Watermelon (97103) v1	cpewmB514
Cp4.1LG20g05910	Csa1G713680	Cucumber (Chinese Long) v2	cpecuB518
Cp4.1LG20g05910	MELO3C021789	Melon (DHL92) v3.5.1	cpemeB473
Cp4.1LG20g05910	ClCG01G009020	Watermelon (Charleston Gray)	cpewcgB451
Cp4.1LG20g05910	CSPI01G34800	Wild cucumber (PI 183967)	cpecpiB520
Cp4.1LG20g05910	Lsi02G010150	Bottle gourd (USVL1VR-Ls)	cpelsiB417
Cp4.1LG20g05910	MELO3C021789.2	Melon (DHL92) v3.6.1	cpemedB554
Cp4.1LG20g05910	CsaV3_1G046670	Cucumber (Chinese Long) v3	cpecucB0637
Cp4.1LG20g05910	Bhi08G000780	Wax gourd	cpewgoB0651
Cp4.1LG20g05910	CsGy1G033290	Cucumber (Gy14) v2	cgybcpeB083
Cp4.1LG20g05910	Carg21434	Silver-seed gourd	carcpeB0553

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g05910	Cucurbita pepo (Zucchini)	cpecpeB048
Cp4.1LG20g05910	Cucurbita maxima (Rimu)	cmacpeB438
Cp4.1LG20g05910	Cucurbita moschata (Rifu)	cmocpeB403
Cp4.1LG20g05910	Melon (DHL92) v3.5.1	cpemeB477
Cp4.1LG20g05910	Melon (DHL92) v3.6.1	cpemedB565
Cp4.1LG20g05910	Silver-seed gourd	carcpeB0630