CsGy1G017960 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G017960
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transmembrane protein
Location	Chr1 : 16068709 .. 16069841 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGGCATAAGGGAGCTCTTAGATCAGAAATAGTTCCTCATAAGTTTCATATTCTGTTAAATATGAAATTTGTTCTCTCATGTTAAATATTTACTTTCGAGACTTAGATTCTGCTGGAATCTTTTAGTTTCCGTTCAAAATTCTCTATTGTAAACTACGAATTATCTTCTGATTGCAGATTTCCTTGTATTATTCTTCACGGATGCACTGTTCTATTGTGGTGTTGCTGTGTTTCTTTTTTTAATTGATCGTTCAAGGAGAACTGCTGAATCTGACACTTTGAAAAACAGTTATCAAACCCTGTCTAATCAATTTGGACGGGGGATCTCTTCTGTAGCTACCTTAGCACTCAGTTTAATAATACCAATGGTCACCATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAAAACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGATGCAAGAAATCATGTTCATGGCCTGTTATTCAAATTGTCTTTCAAGTAAGAATATTCATCTATGATCATTCTCTCTCCACATCTTTTGTTGTCTTGCCCATCCATGTTGTACTTGCTTCATTTAGTTATTCTATGGAGAAAAAGCCATATATTAGTCTATCATTCCCCTCGACTACATTTACATGCCCTTAATAATATTTTACTCAATCATCGATGTCATGGCGTTTGATTTGAAGAGTTCCTATTAAACAGGTTTATAGATTGCATCAACTTAACATAACAGCTCAACTGGTGACAACACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGGATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAACTGCTGCAACAGTGCAGTAAAGTGCAAGATAAGTTCCGAAGGGCAAAAGTGCAGTGAACTTGATAAATTGTTGACCTCATTTTTTGTGTTCATTTCTGCTACATTGCAGTCGAATAGAGCGTTTTCAGAACATATTGCTCTATAACAGCAAGTTGAAATGCATGCTCATATGGGAATTTGTGGATGATGTTATGATAAAGGGAGAA

mRNA sequence

TTGAAGGCATAAGGGAGCTCTTAGATCAGAAATAGTTCCTCATAAGTTTCATATTCTGTTAAATATGAAATTTGTTCTCTCATGTTAAATATTTACTTTCGAGACTTAGATTCTGCTGGAATCTTTTAGTTTCCGTTCAAAATTCTCTATTGTAAACTACGAATTATCTTCTGATTGCAGATTTCCTTGTATTATTCTTCACGGATGCACTGTTCTATTGTGGTGTTGCTGTGTTTCTTTTTTTAATTGATCGTTCAAGGAGAACTGCTGAATCTGACACTTTGAAAAACAGTTATCAAACCCTGTCTAATCAATTTGGACGGGGGATCTCTTCTGTAGCTACCTTAGCACTCAGTTTAATAATACCAATGGTCACCATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAAAACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGATGCAAGAAATCATGTTCATGGCCTGTTATTCAAATTGTCTTTCAAGTTTATAGATTGCATCAACTTAACATAACAGCTCAACTGGTGACAACACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGGATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAACTGCTGCAACAGTGCATCGAATAGAGCGTTTTCAGAACATATTGCTCTATAACAGCAAGTTGAAATGCATGCTCATATGGGAATTTGTGGATGATGTTATGATAAAGGGAGAA

Coding sequence (CDS)

ATGGTCACCATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAAAACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGATGCAAGAAATCATGTTCATGGCCTGTTATTCAAATTGTCTTTCAAGTTTATAGATTGCATCAACTTAACATAACAGCTCAACTGGTGACAACACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGGATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAACTGCTGCAACAGTGCATCGAATAGAGCGTTTTCAGAACATATTGCTCTATAACAGCAAGTTGAAATGCATGCTCATATGGGAATTTGTGGATGATGTTATGATAAAGGGAGAA

Protein sequence

MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAATVHRIERFQNILLYNSKLKCMLIWEFVDDVMIKGE

Homology

[Close]

BLAST of CsGy1G017960 vs. NCBI nr
Match: KGN65171.1 (hypothetical protein Csa_1G256790 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 2.4e-79
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 4   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 63
           MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA
Sbjct: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60

Query: 64  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAATVH 123
           QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AATVH
Sbjct: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH 120

Query: 124 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 156
           RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE
Sbjct: 121 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 152

[Close]

BLAST of CsGy1G017960 vs. NCBI nr
Match: XP_011648473.1 (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN
Sbjct: 324 MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 383

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
           ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 384 ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 443

Query: 121 TV 123
           TV
Sbjct: 444 TV 445

[Close]

BLAST of CsGy1G017960 vs. NCBI nr
Match: XP_011656390.1 (PREDICTED: uncharacterized protein LOC105435726 [Cucumis sativus] >KGN63567.1 hypothetical protein Csa_1G004340 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 6.7e-58
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN
Sbjct: 244 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 303

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 304 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 363

Query: 121 TV 123
           TV
Sbjct: 364 TV 365

[Close]

BLAST of CsGy1G017960 vs. NCBI nr
Match: XP_008464550.1 (PREDICTED: uncharacterized protein LOC103502400 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 114/122 (93.44%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR KKS SWPVI IVFQVYRLHQLN
Sbjct: 244 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARRKKSSSWPVIPIVFQVYRLHQLN 303

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 304 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 363

Query: 121 TV 123
           TV
Sbjct: 364 TV 365

[Close]

BLAST of CsGy1G017960 vs. NCBI nr
Match: XP_022922069.1 (uncharacterized protein LOC111430132 [Cucurbita moschata])

HSP 1 Score: 214.5 bits (545), Expect = 2.5e-52
Identity = 111/122 (90.98%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR K+S SWPVI IVFQVYRLHQLN
Sbjct: 242 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARRKESPSWPVIPIVFQVYRLHQLN 301

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQ LGIICIWSLSSFLMRFFPS AA
Sbjct: 302 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQFLGIICIWSLSSFLMRFFPSNAA 361

Query: 121 TV 123
           T+
Sbjct: 362 TL 363

[Close]

BLAST of CsGy1G017960 vs. TAIR10
Match: AT5G63040.1 (unknown protein)

HSP 1 Score: 134.0 bits (336), Expect = 7.7e-32
Identity = 73/112 (65.18%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMG VWPWTGPAASA LAPYLVGIVVQFAFEQYA                        
Sbjct: 245 MVTMGFVWPWTGPAASATLAPYLVGIVVQFAFEQYAXXXXXXXXXXXXXXXXXXXXXXXX 304

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLM 113
             AQLVT LSFT+KGAE T NNLAI  SLGTLLNV+Q LG+I IWS+SSFLM
Sbjct: 305 XAAQLVTALSFTVKGAEATVNNLAIKKSLGTLLNVIQVLGVISIWSISSFLM 356

[Close]

BLAST of CsGy1G017960 vs. TAIR10
Match: AT1G48460.1 (unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-15
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 6   LVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITAQL 65
           + WP  G  A   + P+LVG  VQ  FE     + S  WP++ IVF+VYRL+Q+   A  
Sbjct: 222 MTWPALGIDALIAVLPFLVGCAVQRVFEARLERRGSSCWPIVPIVFEVYRLYQVTRAATF 281

Query: 66  VTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS 118
           V  L F +K A  T        +L  L+  LQ L ++C+WS  +FLMR FPS
Sbjct: 282 VQRLMFMMKDAATTAEITERGVALVGLVVTLQFLAVMCLWSFITFLMRLFPS 333

[Close]

BLAST of CsGy1G017960 vs. TrEMBL
Match: tr|A0A0A0LYV4|A0A0A0LYV4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256790 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.6e-79
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 4   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 63
           MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA
Sbjct: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60

Query: 64  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAATVH 123
           QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AATVH
Sbjct: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH 120

Query: 124 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 156
           RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE
Sbjct: 121 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 152

[Close]

BLAST of CsGy1G017960 vs. TrEMBL
Match: tr|A0A0A0LS19|A0A0A0LS19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004340 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.5e-58
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN
Sbjct: 244 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 303

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 304 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 363

Query: 121 TV 123
           TV
Sbjct: 364 TV 365

[Close]

BLAST of CsGy1G017960 vs. TrEMBL
Match: tr|A0A1S3CLW8|A0A1S3CLW8_CUCME (uncharacterized protein LOC103502400 OS=Cucumis melo OX=3656 GN=LOC103502400 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 7.9e-55
Identity = 114/122 (93.44%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR KKS SWPVI IVFQVYRLHQLN
Sbjct: 244 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARRKKSSSWPVIPIVFQVYRLHQLN 303

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 304 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 363

Query: 121 TV 123
           TV
Sbjct: 364 TV 365

[Close]

BLAST of CsGy1G017960 vs. TrEMBL
Match: tr|A0A2P5DG22|A0A2P5DG22_PARAD (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_066170 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.4e-50
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR  KS SWPVI I+FQVYRLHQLN
Sbjct: 220 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYMKSPSWPVIPIIFQVYRLHQLN 279

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFT++GAEMT +NLAINSSLGTLLNVLQCLG+ICIWSLSS LMRFFPSTA 
Sbjct: 280 RAAQLVTALSFTVRGAEMTSHNLAINSSLGTLLNVLQCLGVICIWSLSSVLMRFFPSTAV 339

Query: 121 T 122
           +
Sbjct: 340 S 340

[Close]

BLAST of CsGy1G017960 vs. TrEMBL
Match: tr|A0A1U8I5E0|A0A1U8I5E0_GOSHI (uncharacterized protein LOC107890879 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107890879 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.8e-50
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR +KS SWPVI I+FQVYRLHQLN
Sbjct: 231 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYQKSPSWPVIPIIFQVYRLHQLN 290

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPST 119
             AQLVT LSFT+KGAEMT  N+AINSSLGTLLNVLQCLG+ICIWSLSSFLMRF+PST
Sbjct: 291 RAAQLVTALSFTVKGAEMTTYNMAINSSLGTLLNVLQCLGVICIWSLSSFLMRFYPST 348

The following BLAST results are available for this feature:

BLAST of CsGy1G017960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65171.1	2.4e-79	99.34	hypothetical protein Csa_1G256790 [Cucumis sativus]	[more]
XP_011648473.1	1.4e-60	99.18	PREDICTED: F-box protein At3g07870-like [Cucumis sativus]	[more]
XP_011656390.1	6.7e-58	95.90	PREDICTED: uncharacterized protein LOC105435726 [Cucumis sativus] >KGN63567.1 hy...	[more]
XP_008464550.1	1.2e-54	93.44	PREDICTED: uncharacterized protein LOC103502400 [Cucumis melo]	[more]
XP_022922069.1	2.5e-52	90.98	uncharacterized protein LOC111430132 [Cucurbita moschata]	[more]

BLAST of CsGy1G017960 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63040.1	7.7e-32	65.18	unknown protein	[more]
AT1G48460.1	1.0e-15	40.18	unknown protein	[more]

BLAST of CsGy1G017960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G017960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYV4\|A0A0A0LYV4_CUCSA	1.6e-79	99.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256790 PE=4 SV=1	[more]
tr\|A0A0A0LS19\|A0A0A0LS19_CUCSA	4.5e-58	95.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004340 PE=4 SV=1	[more]
tr\|A0A1S3CLW8\|A0A1S3CLW8_CUCME	7.9e-55	93.44	uncharacterized protein LOC103502400 OS=Cucumis melo OX=3656 GN=LOC103502400 PE=...	[more]
tr\|A0A2P5DG22\|A0A2P5DG22_PARAD	3.4e-50	85.95	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_066170 PE=4...	[more]
tr\|A0A1U8I5E0\|A0A1U8I5E0_GOSHI	5.8e-50	87.29	uncharacterized protein LOC107890879 isoform X1 OS=Gossypium hirsutum OX=3635 GN...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G017960.1	CsGy1G017960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33918	FAMILY NOT NAMED	coord: 1..121
None	No IPR available	PANTHER	PTHR33918:SF2	SUBFAMILY NOT NAMED	coord: 1..121

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G017960	Csa1G256790	Cucumber (Chinese Long) v2	cgybcuB006
CsGy1G017960	CSPI01G17790	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G017960	CsaV3_1G029060	Cucumber (Chinese Long) v3	cgybcucB001

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsGy1G017960	CsGy1G016300	Cucumber (Gy14) v2	cgybcgybB003

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G017960	Cucumber (Gy14) v2	cgybcgybB010
CsGy1G017960	Cucumber (Gy14) v2	cgybcgybB026
CsGy1G017960	Cucurbita maxima (Rimu)	cgybcmaB003
CsGy1G017960	Cucurbita maxima (Rimu)	cgybcmaB014
CsGy1G017960	Cucurbita maxima (Rimu)	cgybcmaB039
CsGy1G017960	Cucurbita maxima (Rimu)	cgybcmaB109
CsGy1G017960	Cucurbita moschata (Rifu)	cgybcmoB004
CsGy1G017960	Cucurbita moschata (Rifu)	cgybcmoB014
CsGy1G017960	Cucurbita moschata (Rifu)	cgybcmoB037
CsGy1G017960	Cucurbita pepo (Zucchini)	cgybcpeB040
CsGy1G017960	Cucurbita pepo (Zucchini)	cgybcpeB104
CsGy1G017960	Cucurbita pepo (Zucchini)	cgybcpeB109
CsGy1G017960	Cucurbita pepo (Zucchini)	cgybcpeB141
CsGy1G017960	Cucumber (Chinese Long) v2	cgybcuB017
CsGy1G017960	Cucumber (Chinese Long) v2	cgybcuB030
CsGy1G017960	Bottle gourd (USVL1VR-Ls)	cgyblsiB008
CsGy1G017960	Bottle gourd (USVL1VR-Ls)	cgyblsiB060
CsGy1G017960	Bottle gourd (USVL1VR-Ls)	cgyblsiB071
CsGy1G017960	Melon (DHL92) v3.6.1	cgybmedB064
CsGy1G017960	Melon (DHL92) v3.5.1	cgybmeB049
CsGy1G017960	Melon (DHL92) v3.5.1	cgybmeB068
CsGy1G017960	Melon (DHL92) v3.5.1	cgybmeB072
CsGy1G017960	Melon (DHL92) v3.6.1	cgybmedB045
CsGy1G017960	Melon (DHL92) v3.6.1	cgybmedB068
CsGy1G017960	Watermelon (Charleston Gray)	cgybwcgB061
CsGy1G017960	Watermelon (Charleston Gray)	cgybwcgB063
CsGy1G017960	Watermelon (97103) v1	cgybwmB039
CsGy1G017960	Watermelon (97103) v1	cgybwmB079
CsGy1G017960	Wild cucumber (PI 183967)	cgybcpiB015
CsGy1G017960	Wild cucumber (PI 183967)	cgybcpiB027
CsGy1G017960	Silver-seed gourd	carcgybB0132
CsGy1G017960	Silver-seed gourd	carcgybB0508
CsGy1G017960	Cucumber (Chinese Long) v3	cgybcucB017
CsGy1G017960	Cucumber (Chinese Long) v3	cgybcucB035
CsGy1G017960	Watermelon (97103) v2	cgybwmbB060
CsGy1G017960	Watermelon (97103) v2	cgybwmbB063
CsGy1G017960	Wax gourd	cgybwgoB006
CsGy1G017960	Wax gourd	cgybwgoB072
CsGy1G017960	Wax gourd	cgybwgoB093