CsGy1G017960.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G017960.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transmembrane protein
Location	Chr1 : 16068709 .. 16069841 (-)
Sequence length	833

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGGCATAAGGGAGCTCTTAGATCAGAAATAGTTCCTCATAAGTTTCATATTCTGTTAAATATGAAATTTGTTCTCTCATGTTAAATATTTACTTTCGAGACTTAGATTCTGCTGGAATCTTTTAGTTTCCGTTCAAAATTCTCTATTGTAAACTACGAATTATCTTCTGATTGCAGATTTCCTTGTATTATTCTTCACGGATGCACTGTTCTATTGTGGTGTTGCTGTGTTTCTTTTTTTAATTGATCGTTCAAGGAGAACTGCTGAATCTGACACTTTGAAAAACAGTTATCAAACCCTGTCTAATCAATTTGGACGGGGGATCTCTTCTGTAGCTACCTTAGCACTCAGTTTAATAATACCAATGGTCACCATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAAAACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGATGCAAGAAATCATGTTCATGGCCTGTTATTCAAATTGTCTTTCAAGTAAGAATATTCATCTATGATCATTCTCTCTCCACATCTTTTGTTGTCTTGCCCATCCATGTTGTACTTGCTTCATTTAGTTATTCTATGGAGAAAAAGCCATATATTAGTCTATCATTCCCCTCGACTACATTTACATGCCCTTAATAATATTTTACTCAATCATCGATGTCATGGCGTTTGATTTGAAGAGTTCCTATTAAACAGGTTTATAGATTGCATCAACTTAACATAACAGCTCAACTGGTGACAACACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGGATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAACTGCTGCAACAGTGCAGTAAAGTGCAAGATAAGTTCCGAAGGGCAAAAGTGCAGTGAACTTGATAAATTGTTGACCTCATTTTTTGTGTTCATTTCTGCTACATTGCAGTCGAATAGAGCGTTTTCAGAACATATTGCTCTATAACAGCAAGTTGAAATGCATGCTCATATGGGAATTTGTGGATGATGTTATGATAAAGGGAGAA

mRNA sequence

TTGAAGGCATAAGGGAGCTCTTAGATCAGAAATAGTTCCTCATAAGTTTCATATTCTGTTAAATATGAAATTTGTTCTCTCATGTTAAATATTTACTTTCGAGACTTAGATTCTGCTGGAATCTTTTAGTTTCCGTTCAAAATTCTCTATTGTAAACTACGAATTATCTTCTGATTGCAGATTTCCTTGTATTATTCTTCACGGATGCACTGTTCTATTGTGGTGTTGCTGTGTTTCTTTTTTTAATTGATCGTTCAAGGAGAACTGCTGAATCTGACACTTTGAAAAACAGTTATCAAACCCTGTCTAATCAATTTGGACGGGGGATCTCTTCTGTAGCTACCTTAGCACTCAGTTTAATAATACCAATGGTCACCATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAAAACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGATGCAAGAAATCATGTTCATGGCCTGTTATTCAAATTGTCTTTCAAGTTTATAGATTGCATCAACTTAACATAACAGCTCAACTGGTGACAACACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGGATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAACTGCTGCAACAGTGCATCGAATAGAGCGTTTTCAGAACATATTGCTCTATAACAGCAAGTTGAAATGCATGCTCATATGGGAATTTGTGGATGATGTTATGATAAAGGGAGAA

Coding sequence (CDS)

ATGGTCACCATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAAAACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGATGCAAGAAATCATGTTCATGGCCTGTTATTCAAATTGTCTTTCAAGTTTATAGATTGCATCAACTTAACATAACAGCTCAACTGGTGACAACACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGGATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAACTGCTGCAACAGTGCATCGAATAGAGCGTTTTCAGAACATATTGCTCTATAACAGCAAGTTGAAATGCATGCTCATATGGGAATTTGTGGATGATGTTATGATAAAGGGAGAA

Protein sequence

MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAATVHRIERFQNILLYNSKLKCMLIWEFVDDVMIKGE

Homology

[Close]

BLAST of CsGy1G017960.1 vs. NCBI nr
Match: KGN65171.1 (hypothetical protein Csa_1G256790 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 2.4e-79
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 4   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 63
           MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA
Sbjct: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60

Query: 64  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAATVH 123
           QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AATVH
Sbjct: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH 120

Query: 124 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 156
           RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE
Sbjct: 121 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 152

[Close]

BLAST of CsGy1G017960.1 vs. NCBI nr
Match: XP_011648473.1 (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN
Sbjct: 324 MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 383

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
           ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 384 ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 443

Query: 121 TV 123
           TV
Sbjct: 444 TV 445

[Close]

BLAST of CsGy1G017960.1 vs. NCBI nr
Match: XP_011656390.1 (PREDICTED: uncharacterized protein LOC105435726 [Cucumis sativus] >KGN63567.1 hypothetical protein Csa_1G004340 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 6.7e-58
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN
Sbjct: 244 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 303

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 304 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 363

Query: 121 TV 123
           TV
Sbjct: 364 TV 365

[Close]

BLAST of CsGy1G017960.1 vs. NCBI nr
Match: XP_008464550.1 (PREDICTED: uncharacterized protein LOC103502400 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 114/122 (93.44%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR KKS SWPVI IVFQVYRLHQLN
Sbjct: 244 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARRKKSSSWPVIPIVFQVYRLHQLN 303

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 304 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 363

Query: 121 TV 123
           TV
Sbjct: 364 TV 365

[Close]

BLAST of CsGy1G017960.1 vs. NCBI nr
Match: XP_022922069.1 (uncharacterized protein LOC111430132 [Cucurbita moschata])

HSP 1 Score: 214.5 bits (545), Expect = 2.5e-52
Identity = 111/122 (90.98%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR K+S SWPVI IVFQVYRLHQLN
Sbjct: 242 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARRKESPSWPVIPIVFQVYRLHQLN 301

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQ LGIICIWSLSSFLMRFFPS AA
Sbjct: 302 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQFLGIICIWSLSSFLMRFFPSNAA 361

Query: 121 TV 123
           T+
Sbjct: 362 TL 363

[Close]

BLAST of CsGy1G017960.1 vs. TAIR10
Match: AT5G63040.1 (unknown protein)

HSP 1 Score: 134.0 bits (336), Expect = 7.7e-32
Identity = 73/112 (65.18%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMG VWPWTGPAASA LAPYLVGIVVQFAFEQYA                        
Sbjct: 245 MVTMGFVWPWTGPAASATLAPYLVGIVVQFAFEQYAXXXXXXXXXXXXXXXXXXXXXXXX 304

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLM 113
             AQLVT LSFT+KGAE T NNLAI  SLGTLLNV+Q LG+I IWS+SSFLM
Sbjct: 305 XAAQLVTALSFTVKGAEATVNNLAIKKSLGTLLNVIQVLGVISIWSISSFLM 356

[Close]

BLAST of CsGy1G017960.1 vs. TAIR10
Match: AT1G48460.1 (unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-15
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 6   LVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITAQL 65
           + WP  G  A   + P+LVG  VQ  FE     + S  WP++ IVF+VYRL+Q+   A  
Sbjct: 222 MTWPALGIDALIAVLPFLVGCAVQRVFEARLERRGSSCWPIVPIVFEVYRLYQVTRAATF 281

Query: 66  VTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS 118
           V  L F +K A  T        +L  L+  LQ L ++C+WS  +FLMR FPS
Sbjct: 282 VQRLMFMMKDAATTAEITERGVALVGLVVTLQFLAVMCLWSFITFLMRLFPS 333

[Close]

BLAST of CsGy1G017960.1 vs. TrEMBL
Match: tr|A0A0A0LYV4|A0A0A0LYV4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256790 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.6e-79
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 4   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 63
           MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA
Sbjct: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60

Query: 64  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAATVH 123
           QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AATVH
Sbjct: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH 120

Query: 124 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 156
           RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE
Sbjct: 121 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 152

[Close]

BLAST of CsGy1G017960.1 vs. TrEMBL
Match: tr|A0A0A0LS19|A0A0A0LS19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004340 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.5e-58
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN
Sbjct: 244 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 303

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 304 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 363

Query: 121 TV 123
           TV
Sbjct: 364 TV 365

[Close]

BLAST of CsGy1G017960.1 vs. TrEMBL
Match: tr|A0A1S3CLW8|A0A1S3CLW8_CUCME (uncharacterized protein LOC103502400 OS=Cucumis melo OX=3656 GN=LOC103502400 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 7.9e-55
Identity = 114/122 (93.44%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR KKS SWPVI IVFQVYRLHQLN
Sbjct: 244 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARRKKSSSWPVIPIVFQVYRLHQLN 303

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS AA
Sbjct: 304 RAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAA 363

Query: 121 TV 123
           TV
Sbjct: 364 TV 365

[Close]

BLAST of CsGy1G017960.1 vs. TrEMBL
Match: tr|A0A2P5DG22|A0A2P5DG22_PARAD (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_066170 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.4e-50
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR  KS SWPVI I+FQVYRLHQLN
Sbjct: 220 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYMKSPSWPVIPIIFQVYRLHQLN 279

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSTAA 120
             AQLVT LSFT++GAEMT +NLAINSSLGTLLNVLQCLG+ICIWSLSS LMRFFPSTA 
Sbjct: 280 RAAQLVTALSFTVRGAEMTSHNLAINSSLGTLLNVLQCLGVICIWSLSSVLMRFFPSTAV 339

Query: 121 T 122
           +
Sbjct: 340 S 340

[Close]

BLAST of CsGy1G017960.1 vs. TrEMBL
Match: tr|A0A1U8I5E0|A0A1U8I5E0_GOSHI (uncharacterized protein LOC107890879 isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107890879 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.8e-50
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MVTMGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN 60
           MVTMGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR +KS SWPVI I+FQVYRLHQLN
Sbjct: 231 MVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYQKSPSWPVIPIIFQVYRLHQLN 290

Query: 61  ITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPST 119
             AQLVT LSFT+KGAEMT  N+AINSSLGTLLNVLQCLG+ICIWSLSSFLMRF+PST
Sbjct: 291 RAAQLVTALSFTVKGAEMTTYNMAINSSLGTLLNVLQCLGVICIWSLSSFLMRFYPST 348

The following BLAST results are available for this feature:

BLAST of CsGy1G017960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65171.1	2.4e-79	99.34	hypothetical protein Csa_1G256790 [Cucumis sativus]	[more]
XP_011648473.1	1.4e-60	99.18	PREDICTED: F-box protein At3g07870-like [Cucumis sativus]	[more]
XP_011656390.1	6.7e-58	95.90	PREDICTED: uncharacterized protein LOC105435726 [Cucumis sativus] >KGN63567.1 hy...	[more]
XP_008464550.1	1.2e-54	93.44	PREDICTED: uncharacterized protein LOC103502400 [Cucumis melo]	[more]
XP_022922069.1	2.5e-52	90.98	uncharacterized protein LOC111430132 [Cucurbita moschata]	[more]

BLAST of CsGy1G017960.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63040.1	7.7e-32	65.18	unknown protein	[more]
AT1G48460.1	1.0e-15	40.18	unknown protein	[more]

BLAST of CsGy1G017960.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G017960.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYV4\|A0A0A0LYV4_CUCSA	1.6e-79	99.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256790 PE=4 SV=1	[more]
tr\|A0A0A0LS19\|A0A0A0LS19_CUCSA	4.5e-58	95.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004340 PE=4 SV=1	[more]
tr\|A0A1S3CLW8\|A0A1S3CLW8_CUCME	7.9e-55	93.44	uncharacterized protein LOC103502400 OS=Cucumis melo OX=3656 GN=LOC103502400 PE=...	[more]
tr\|A0A2P5DG22\|A0A2P5DG22_PARAD	3.4e-50	85.95	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_066170 PE=4...	[more]
tr\|A0A1U8I5E0\|A0A1U8I5E0_GOSHI	5.8e-50	87.29	uncharacterized protein LOC107890879 isoform X1 OS=Gossypium hirsutum OX=3635 GN...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G017960	CsGy1G017960	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G017960.1	CsGy1G017960.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G017960.1.five_prime_UTR.1	CsGy1G017960.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G017960.1.exon.3	CsGy1G017960.1.exon.3	exon
CsGy1G017960.1.exon.2	CsGy1G017960.1.exon.2	exon
CsGy1G017960.1.exon.1	CsGy1G017960.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G017960.1.CDS.3	CsGy1G017960.1.CDS.3	CDS
CsGy1G017960.1.CDS.2	CsGy1G017960.1.CDS.2	CDS
CsGy1G017960.1.CDS.1	CsGy1G017960.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33918	FAMILY NOT NAMED	coord: 1..121
None	No IPR available	PANTHER	PTHR33918:SF2	SUBFAMILY NOT NAMED	coord: 1..121