Csa1G256790 (gene) Cucumber (Chinese Long) v2

NameCsa1G256790
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPutative uncharacterized protein At5g63040/MJH22_10
LocationChr1 : 12573914 .. 12574672 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAAAACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGATGCAAGAAATCATGTTCATGGCCTGTTATTCAAATTGTCTTTCAAGTAAGAATATTCATCTATGATCATTCTCTCTCCACATCTTTTGTTGTCTTGCCCATCCATGTTGTACTTGCTTCATTTAGTTATTCTATGGAGAAAAAGCCATATATTAGTCTATCATTCCCCTCGACTACATTTACATGCCCTTAATAATATTTTACTCAATCATCGATGTCATGGCGTTTGATTTGAAGAGTTCCTATTAAACAGGTTTATAGATTGCATCAACTTAACATAACAGCTCAACTGGTGACAACACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGGATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAAATGCTGCAACAGTGCAGTAAAGTGCAAGATAAGTTCCGAAGGGCAAAAGTGCAGTGAACTTGATAAATTGTTGACCTCATTTTTTGTGTTCATTTCTGCTACATTGCAGTCGAATAGAGCGTTTTCAGAACATATTGCTCTATAACAGCAAGTTGAAATGCATGCTCATATGGGAATTTGTGGATGATGTTATGATAAAGGGAGAATGA

mRNA sequence

ATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAAAACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGATGCAAGAAATCATGTTCATGGCCTGTTATTCAAATTGTCTTTCAAGTTTATAGATTGCATCAACTTAACATAACAGCTCAACTGGTGACAACACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGGATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAAATGCTGCAACAGTGCATCGAATAGAGCGTTTTCAGAACATATTGCTCTATAACAGCAAGTTGAAATGCATGCTCATATGGGAATTTGTGGATGATGTTATGATAAAGGGAGAATGA

Coding sequence (CDS)

ATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAAAACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGATGCAAGAAATCATGTTCATGGCCTGTTATTCAAATTGTCTTTCAAGTTTATAGATTGCATCAACTTAACATAACAGCTCAACTGGTGACAACACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCAAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGGATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAAATGCTGCAACAGTGCATCGAATAGAGCGTTTTCAGAACATATTGCTCTATAACAGCAAGTTGAAATGCATGCTCATATGGGAATTTGTGGATGATGTTATGATAAAGGGAGAATGA

Protein sequence

MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITAQLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVHRIERFQNILLYNSKLKCMLIWEFVDDVMIKGE*
BLAST of Csa1G256790 vs. TrEMBL
Match: A0A0A0LYV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256790 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 6.9e-82
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA
Sbjct: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH 120
           QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH
Sbjct: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH 120

Query: 121 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 153
           RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE
Sbjct: 121 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 152

BLAST of Csa1G256790 vs. TrEMBL
Match: A0A0A0LS19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004340 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.2e-59
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASA LAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN  A
Sbjct: 247 MGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNRAA 306

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV 120
           QLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV
Sbjct: 307 QLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV 365

BLAST of Csa1G256790 vs. TrEMBL
Match: W9RID3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014580 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.7e-51
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR  KS SWPVI I+FQVYRLHQLN  A
Sbjct: 250 MGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYTKSPSWPVIPIIFQVYRLHQLNRAA 309

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAAT 119
           QLVT LSFT++GAEMT +NLAINSSLGTLLNVLQCLG+ICIWSLSSFLMRFFPSNA +
Sbjct: 310 QLVTALSFTVRGAEMTSHNLAINSSLGTLLNVLQCLGVICIWSLSSFLMRFFPSNAVS 367

BLAST of Csa1G256790 vs. TrEMBL
Match: A0A0D2S601_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G190000 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR +KS SWPVI I+FQVYRLHQLN  A
Sbjct: 289 MGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYQKSPSWPVIPIIFQVYRLHQLNRAA 348

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS 115
           QLVT LSFT+KGAEMT  N+AINSSLGTLLNVLQCLG+ICIWSLSSFLMRF+PS
Sbjct: 349 QLVTALSFTVKGAEMTTYNMAINSSLGTLLNVLQCLGVICIWSLSSFLMRFYPS 402

BLAST of Csa1G256790 vs. TrEMBL
Match: A0A0B0PYI7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_12495 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR +KS SWPVI I+FQVYRLHQLN  A
Sbjct: 234 MGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYQKSPSWPVIPIIFQVYRLHQLNRAA 293

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS 115
           QLVT LSFT+KGAEMT  N+AINSSLGTLLNVLQCLG+ICIWSLSSFLMRF+PS
Sbjct: 294 QLVTALSFTVKGAEMTTYNMAINSSLGTLLNVLQCLGVICIWSLSSFLMRFYPS 347

BLAST of Csa1G256790 vs. TAIR10
Match: AT5G63040.1 (AT5G63040.1 unknown protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-43
Identity = 86/109 (78.90%), Postives = 91/109 (83.49%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MG VWPWTGPAASA LAPYLVGIVVQFAFEQYAR + S S P+I I+FQVYRLHQLN  A
Sbjct: 248 MGFVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRNSPSSPIIPIIFQVYRLHQLNRAA 307

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLM 110
           QLVT LSFT+KGAE T NNLAI  SLGTLLNV+Q LG+I IWS+SSFLM
Sbjct: 308 QLVTALSFTVKGAEATVNNLAIKKSLGTLLNVIQVLGVISIWSISSFLM 356

BLAST of Csa1G256790 vs. TAIR10
Match: AT1G48460.1 (AT1G48460.1 unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-17
Identity = 45/112 (40.18%), Postives = 59/112 (52.68%), Query Frame = 1

Query: 3   LVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITAQL 62
           + WP  G  A   + P+LVG  VQ  FE     + S  WP++ IVF+VYRL+Q+   A  
Sbjct: 222 MTWPALGIDALIAVLPFLVGCAVQRVFEARLERRGSSCWPIVPIVFEVYRLYQVTRAATF 281

Query: 63  VTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPS 115
           V  L F +K A  T        +L  L+  LQ L ++C+WS  +FLMR FPS
Sbjct: 282 VQRLMFMMKDAATTAEITERGVALVGLVVTLQFLAVMCLWSFITFLMRLFPS 333

BLAST of Csa1G256790 vs. NCBI nr
Match: gi|700210075|gb|KGN65171.1| (hypothetical protein Csa_1G256790 [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 9.9e-82
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA
Sbjct: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH 120
           QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH
Sbjct: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVH 120

Query: 121 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 153
           RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE
Sbjct: 121 RIERFQNILLYNSKLKCMLIWEFVDDVMIKGE 152

BLAST of Csa1G256790 vs. NCBI nr
Match: gi|778665047|ref|XP_011648473.1| (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 2.5e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA
Sbjct: 327 MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 386

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV 120
           QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV
Sbjct: 387 QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV 445

BLAST of Csa1G256790 vs. NCBI nr
Match: gi|778655605|ref|XP_011656390.1| (PREDICTED: uncharacterized protein LOC105435726 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-58
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASA LAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLN  A
Sbjct: 247 MGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNRAA 306

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV 120
           QLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV
Sbjct: 307 QLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV 365

BLAST of Csa1G256790 vs. NCBI nr
Match: gi|659129154|ref|XP_008464550.1| (PREDICTED: uncharacterized protein LOC103502400 [Cucumis melo])

HSP 1 Score: 223.8 bits (569), Expect = 2.1e-55
Identity = 112/119 (94.12%), Postives = 112/119 (94.12%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR KKS SWPVI IVFQVYRLHQLN  A
Sbjct: 247 MGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARRKKSSSWPVIPIVFQVYRLHQLNRAA 306

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV 120
           QLVT LSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV
Sbjct: 307 QLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATV 365

BLAST of Csa1G256790 vs. NCBI nr
Match: gi|703122227|ref|XP_010102524.1| (hypothetical protein L484_014580 [Morus notabilis])

HSP 1 Score: 209.1 bits (531), Expect = 5.3e-51
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 1

Query: 1   MGLVWPWTGPAASAKLAPYLVGIVVQFAFEQYARCKKSCSWPVIQIVFQVYRLHQLNITA 60
           MGLVWPWTGPAASA LAPYLVGIVVQFAFEQYAR  KS SWPVI I+FQVYRLHQLN  A
Sbjct: 250 MGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYTKSPSWPVIPIIFQVYRLHQLNRAA 309

Query: 61  QLVTTLSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAAT 119
           QLVT LSFT++GAEMT +NLAINSSLGTLLNVLQCLG+ICIWSLSSFLMRFFPSNA +
Sbjct: 310 QLVTALSFTVRGAEMTSHNLAINSSLGTLLNVLQCLGVICIWSLSSFLMRFFPSNAVS 367

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LYV4_CUCSA6.9e-82100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256790 PE=4 SV=1[more]
A0A0A0LS19_CUCSA8.2e-5996.64Uncharacterized protein OS=Cucumis sativus GN=Csa_1G004340 PE=4 SV=1[more]
W9RID3_9ROSA3.7e-5186.44Uncharacterized protein OS=Morus notabilis GN=L484_014580 PE=4 SV=1[more]
A0A0D2S601_GOSRA1.5e-4986.84Uncharacterized protein OS=Gossypium raimondii GN=B456_006G190000 PE=4 SV=1[more]
A0A0B0PYI7_GOSAR1.5e-4986.84Uncharacterized protein OS=Gossypium arboreum GN=F383_12495 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G63040.11.1e-4378.90 unknown protein[more]
AT1G48460.14.1e-1740.18 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700210075|gb|KGN65171.1|9.9e-82100.00hypothetical protein Csa_1G256790 [Cucumis sativus][more]
gi|778665047|ref|XP_011648473.1|2.5e-61100.00PREDICTED: F-box protein At3g07870-like [Cucumis sativus][more]
gi|778655605|ref|XP_011656390.1|1.2e-5896.64PREDICTED: uncharacterized protein LOC105435726 [Cucumis sativus][more]
gi|659129154|ref|XP_008464550.1|2.1e-5594.12PREDICTED: uncharacterized protein LOC103502400 [Cucumis melo][more]
gi|703122227|ref|XP_010102524.1|5.3e-5186.44hypothetical protein L484_014580 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G256790.1Csa1G256790.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33918FAMILY NOT NAMEDcoord: 1..132
score: 2.0
NoneNo IPR availablePANTHERPTHR33918:SF2SUBFAMILY NOT NAMEDcoord: 1..132
score: 2.0