CsGy1G013240 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G013240
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	arp2/3 complex-activating protein rickA
Location	Chr1 : 8610389 .. 8612032 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGATAGATATTGTATAGAATAGAGAAAGTAGGTTGAGTGTGATTAGGTTTTGATGCATACATACATATATATTAACATCCCGCTTTTCTCGCTCAAATCTTCTTATTCCTCTATTTATTCTCAACCCCACTTTCTTTCTCTTTTTTTCAAGTGATAATTTAACCACATCTCCCAACCCTAAAAACTTCTCCTTTTTCCTTTCCTTTTATAAAAACCTCACCATTCCCAACTTCTTAATCCCAATTTCCCCCTCCCCCTTTTTTCTCTCTAACTCCATGGATAACCATCGCTCCCCTGTTTTCACTTGGGCCTATTTCTTGCAAGCCAATGTGAGTTTCTCCTCTGTTTTCAATTTCGGTTTTTCATTTCCATTTCCATTTTCGTTTTCGTTTTCATTTTTGTGCTTTTGGTTTTAACAGAACATTGATGAGTTACGCCATTCACTTTTATGCACAACTCTAGAGCTTGAACAAACTAGAATTGCTGTTCAAGAAGAGCTTAAGAAAAGAGATGATCAAGTTTTTCATCTCAAGAATCTCTTGAATCAAGCCATTAAAGAGAGAGATGAAGCTAATAAAAAATGTGAGAATCTTCTTCTTCACAAACTCTTCTTCAATCAACATTCTGCTCCAATTTCCACCATTGATGACGACCCCACCAAAGCATTTGACTCACAAAATGCTTTCTCTTCCTCCGATTGCGACGAGAGCATCGTATCTGTTTCATCTCCAGTCCCCCCACCGCCGGATATCTCCGATTGGATCTCCGATAAGCCATTGCCGGAAAAGGGTAAGCTCTTACAAGCTGTCATGAAAGCCGGTCCGCTTCTTCAAACTCTGCTTCTCGCTGGACCGCTTCCTCAGTGGAGACATCCGCCGCCGCCGCTTGAATCTTTCCACTTGCCGCCGGTTGCAATTCCACATCCTCCGCCACCGCCGCCGCTGGTACCTGTTCATTCTGAGGCTACTCATTGTGGGATTGTTAACAAGAAGAGGGCTCTGTCTTTGTGTGAGGAATCGGATACGTTACCGGCGACCAAATTCCAAAGGCTTGTTTTTCACTGACTTTCAACCAAAACAACTTAGATTAATCTTACATAATTATATATTAAATTAGAATCAGTCTCAAAAAAAGAAGAAAACACAAAATGGGTCATTTTTTGTGACTTTATTTTGTATAGTTGTTTGTTCTATATATATTACCCCCCAAAACAAAACCCCTAGTTTAGTTAGCTTGGAGTAACTCAAAAAATGGGTTCTCTCTTTCTTTCTTTTTCTTGGCCTCTCCATAGAAATTGTGTGATATGTGACGACATTGATATAGGATGTAGCGTAGCTGATCTGAGAATAGTTGAATTGATTTAAGTATTAGTAAATGTGGAATGTACGGATTTGTAATAGTAGTTTTTTTTTATAAAAAAAAAAATAGTGAAGTTAGAGTGATAGTTTGATTAGGGTTTGGGGTATTAAGAGAGATTGAGGAGTTTTAAGATGTGTGGGGGAGAGTAGTTGGGGAGGAAAAGCATATGGTCCTACATATCAAGAAGGATCTTTGTTGTTTGTGTGATTTTGTATGGATTTGTATACCAAAAAGATTTAGACCAAGTTTAATTTTATTGTATTAATTCAACTCTCTTTTCTTA

mRNA sequence

GTAGATAGATATTGTATAGAATAGAGAAAGTAGGTTGAGTGTGATTAGGTTTTGATGCATACATACATATATATTAACATCCCGCTTTTCTCGCTCAAATCTTCTTATTCCTCTATTTATTCTCAACCCCACTTTCTTTCTCTTTTTTTCAAGTGATAATTTAACCACATCTCCCAACCCTAAAAACTTCTCCTTTTTCCTTTCCTTTTATAAAAACCTCACCATTCCCAACTTCTTAATCCCAATTTCCCCCTCCCCCTTTTTTCTCTCTAACTCCATGGATAACCATCGCTCCCCTGTTTTCACTTGGGCCTATTTCTTGCAAGCCAATAACATTGATGAGTTACGCCATTCACTTTTATGCACAACTCTAGAGCTTGAACAAACTAGAATTGCTGTTCAAGAAGAGCTTAAGAAAAGAGATGATCAAGTTTTTCATCTCAAGAATCTCTTGAATCAAGCCATTAAAGAGAGAGATGAAGCTAATAAAAAATGTGAGAATCTTCTTCTTCACAAACTCTTCTTCAATCAACATTCTGCTCCAATTTCCACCATTGATGACGACCCCACCAAAGCATTTGACTCACAAAATGCTTTCTCTTCCTCCGATTGCGACGAGAGCATCGTATCTGTTTCATCTCCAGTCCCCCCACCGCCGGATATCTCCGATTGGATCTCCGATAAGCCATTGCCGGAAAAGGGTAAGCTCTTACAAGCTGTCATGAAAGCCGGTCCGCTTCTTCAAACTCTGCTTCTCGCTGGACCGCTTCCTCAGTGGAGACATCCGCCGCCGCCGCTTGAATCTTTCCACTTGCCGCCGGTTGCAATTCCACATCCTCCGCCACCGCCGCCGCTGGTACCTGTTCATTCTGAGGCTACTCATTGTGGGATTGTTAACAAGAAGAGGGCTCTGTCTTTGTGTGAGGAATCGGATACGTTACCGGCGACCAAATTCCAAAGGCTTGTTTTTCACTGACTTTCAACCAAAACAACTTAGATTAATCTTACATAATTATATATTAAATTAGAATCAGTCTCAAAAAAAGAAGAAAACACAAAATGGGTCATTTTTTGTGACTTTATTTTGTATAGTTGTTTGTTCTATATATATTACCCCCCAAAACAAAACCCCTAGTTTAGTTAGCTTGGAGTAACTCAAAAAATGGGTTCTCTCTTTCTTTCTTTTTCTTGGCCTCTCCATAGAAATTGTGTGATATGTGACGACATTGATATAGGATGTAGCGTAGCTGATCTGAGAATAGTTGAATTGATTTAAGTATTAGTAAATGTGGAATGTACGGATTTGTAATAGTAGTTTTTTTTTATAAAAAAAAAAATAGTGAAGTTAGAGTGATAGTTTGATTAGGGTTTGGGGTATTAAGAGAGATTGAGGAGTTTTAAGATGTGTGGGGGAGAGTAGTTGGGGAGGAAAAGCATATGGTCCTACATATCAAGAAGGATCTTTGTTGTTTGTGTGATTTTGTATGGATTTGTATACCAAAAAGATTTAGACCAAGTTTAATTTTATTGTATTAATTCAACTCTCTTTTCTTA

Coding sequence (CDS)

ATGGATAACCATCGCTCCCCTGTTTTCACTTGGGCCTATTTCTTGCAAGCCAATAACATTGATGAGTTACGCCATTCACTTTTATGCACAACTCTAGAGCTTGAACAAACTAGAATTGCTGTTCAAGAAGAGCTTAAGAAAAGAGATGATCAAGTTTTTCATCTCAAGAATCTCTTGAATCAAGCCATTAAAGAGAGAGATGAAGCTAATAAAAAATGTGAGAATCTTCTTCTTCACAAACTCTTCTTCAATCAACATTCTGCTCCAATTTCCACCATTGATGACGACCCCACCAAAGCATTTGACTCACAAAATGCTTTCTCTTCCTCCGATTGCGACGAGAGCATCGTATCTGTTTCATCTCCAGTCCCCCCACCGCCGGATATCTCCGATTGGATCTCCGATAAGCCATTGCCGGAAAAGGGTAAGCTCTTACAAGCTGTCATGAAAGCCGGTCCGCTTCTTCAAACTCTGCTTCTCGCTGGACCGCTTCCTCAGTGGAGACATCCGCCGCCGCCGCTTGAATCTTTCCACTTGCCGCCGGTTGCAATTCCACATCCTCCGCCACCGCCGCCGCTGGTACCTGTTCATTCTGAGGCTACTCATTGTGGGATTGTTAACAAGAAGAGGGCTCTGTCTTTGTGTGAGGAATCGGATACGTTACCGGCGACCAAATTCCAAAGGCTTGTTTTTCACTGA

Protein sequence

MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLNQAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESFHLPPVAIPHPPPPPPLVPVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH

Homology

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BLAST of CsGy1G013240 vs. NCBI nr
Match: XP_004147279.1 (PREDICTED: formin-3 [Cucumis sativus] >KGN64785.1 hypothetical protein Csa_1G097650 [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 7.9e-95
Identity = 231/232 (99.57%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELK+RDDQVFHLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120
           QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120

Query: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 233
           XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH
Sbjct: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 232

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BLAST of CsGy1G013240 vs. NCBI nr
Match: XP_008463249.1 (PREDICTED: arp2/3 complex-activating protein rickA [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 4.0e-91
Identity = 224/232 (96.55%), Postives = 227/232 (97.84%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQV HLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120
           QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120

Query: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           SPVPPPP+ISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SPVPPPPEISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 233
           X  XXXXXXXXXXXX  SEAT+CGIVNKKRALSLCEESD+LPATKFQRLVFH
Sbjct: 181 XVAXXXXXXXXXXXXXXSEATNCGIVNKKRALSLCEESDSLPATKFQRLVFH 232

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BLAST of CsGy1G013240 vs. NCBI nr
Match: XP_022948979.1 (uncharacterized protein LOC111452463 [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 3.6e-55
Identity = 161/244 (65.98%), Postives = 175/244 (71.72%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL K+DDQ+ HLKNLLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANKKCENL------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAFS 120
           QAI+ERDEAN+KC+ L                         ISTIDD P K FDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXX 180
           SSDCDESIVS        P+I DW+ +KPLPEKGKLLQAVM  XXXXXXXXXXXXXXXXX
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQR 233
           XXXXXXXXXXXXX                   T+CGIVNKKRALSLCE+SD+  ATKFQR
Sbjct: 181 XXXXXXXXXXXXXVTIPLPPPLPSLAD-----TNCGIVNKKRALSLCEDSDSQTATKFQR 232

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BLAST of CsGy1G013240 vs. NCBI nr
Match: XP_022998894.1 (uncharacterized protein LOC111493418 [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 2.3e-54
Identity = 160/244 (65.57%), Postives = 175/244 (71.72%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL K+DDQ+ HLKNLLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANKKCENL------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAFS 120
           QAI+ERDEAN+KC+ L                         ISTIDD P K FDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXAISTIDDYPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXX 180
           SSDCDESIVS        P+I DW+ +KPLPEKGKLLQAVM  XXXXXXXXXXXXXXXXX
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQR 233
           XXXXXXXXXXXXX                   ++CGIVNKKRALSLCE+SD+  ATKFQR
Sbjct: 181 XXXXXXXXXXXXXVTIPLPPPLPSLAD-----SNCGIVNKKRALSLCEDSDSQTATKFQR 232

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BLAST of CsGy1G013240 vs. NCBI nr
Match: XP_023525552.1 (uncharacterized protein LOC111789130 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.9 bits (551), Expect = 7.5e-53
Identity = 157/244 (64.34%), Postives = 172/244 (70.49%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL K+DDQ+ HLKNLLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANKKCENL------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAFS 120
           QAI+ERDEAN+KC+ L                         ISTIDD P K FDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXX 180
           SSDCDESIVS        P+I DW+ +KPLPEKGKLLQAVM  XXXXXXXXXXXXXXXXX
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQR 233
           XXXXXXXXXXXX                    ++CGIVNKKRAL L E+SD+  ATKFQR
Sbjct: 181 XXXXXXXXXXXXPVRIPLPPPLPSLAD-----SNCGIVNKKRALFLSEDSDSQTATKFQR 232

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BLAST of CsGy1G013240 vs. TAIR10
Match: AT5G22930.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 122.9 bits (307), Expect = 2.7e-28
Identity = 73/169 (43.20%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDN  + +  W Y+  A   +E+R SLL TTLEL+QT++   EE++KRD+Q+ HLK++L 
Sbjct: 1   MDNQSNALLGWPYYSHAKTTEEIRQSLLYTTLELDQTKMFAYEEIRKRDEQLIHLKDILT 60

Query: 61  QAIKERDEANKKCENLLL--HKLFFNQHSAP----ISTIDDDPT--KAFDSQNAFSSSDC 120
           + IKERDEA +KC+ L+   H L   +H  P     S+I+D+    +   S  +FSSSDC
Sbjct: 61  KTIKERDEALEKCQRLMFDSHSLQQQKHMTPPLSGASSIEDEQVQPQQLRSNKSFSSSDC 120

Query: 121 DESIVSVSSPV--PPPPDISD----------WISDKPLPEKGKLLQAVM 150
           +ESI+S +  +  PPP  + +           + DKPLPEKGKLLQAV+
Sbjct: 121 EESIMSPTDHIMNPPPCQLEEVSGTEIIMDPLLQDKPLPEKGKLLQAVI 169

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BLAST of CsGy1G013240 vs. TAIR10
Match: AT2G28140.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-21
Identity = 66/144 (45.83%), Postives = 91/144 (63.19%), Query Frame = 0


Query: 8   VFTWAYFLQA--NNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLNQAIKE 67
           + +W++  Q     I+ELRHSLL TT+ELEQTR+   EEL  +DDQ+  LK+LLN+AIKE
Sbjct: 9   LLSWSHQNQCGIKTIEELRHSLLHTTMELEQTRMVASEELIAKDDQIMQLKDLLNKAIKE 68

Query: 68  RDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVSSPVPP 127
           +DEA ++ + +LL + F  QH    +  + DP     + N F SSD +ESIV   S   P
Sbjct: 69  KDEAQERYKRILLDQNFLLQHQ---TDEEQDP-----NINGFHSSDGEESIV---SSFEP 128

Query: 128 PPDISDWISDKPLPEKGKLLQAVM 150
           P +I     +  LPEKGKLL+AV+
Sbjct: 129 PVEIELDFPEMTLPEKGKLLKAVV 141

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BLAST of CsGy1G013240 vs. TAIR10
Match: AT3G44940.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-17
Identity = 109/262 (41.60%), Postives = 141/262 (53.82%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MD   S + +W YF      +ELR +L+ TT+ELEQT++   EEL+KRD+Q+ HL+++L 
Sbjct: 1   MDQSNS-LLSWTYFSHGKTTEELRQTLVYTTMELEQTKLVAHEELRKRDEQLIHLEDVLT 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTID--------------------DDPTKA 120
           + +KERDEA +K  +L                                            
Sbjct: 61  KTLKERDEALEKYNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQPQQPQ 120

Query: 121 FDSQNAFSSSDCDESIV--SVSSPVPPPPDI--------SDWISDKPLPEKGKLLQAVMX 180
            +S  +FSSSD +ESI+  SV  PV     I        +  + DKPLPEKGKLLQAV+X
Sbjct: 121 LNSNKSFSSSDTEESIMSPSVIDPVTMNQQIEVSGDEMLATLLPDKPLPEKGKLLQAVIX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKR 233
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 +   CG  NKKR
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIPLP---------QFQNNGCGNSNKKR 240

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BLAST of CsGy1G013240 vs. TAIR10
Match: AT2G28690.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 42.4 bits (98), Expect = 4.6e-04
Identity = 46/153 (30.07%), Postives = 70/153 (45.75%), Query Frame = 0


Query: 11  WAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLNQAIKERDEAN 70
           W Y     ++DELR  L  ++ ELE  +    EE K   ++V +L +LL  A +ERDEA 
Sbjct: 8   WFY---QESMDELRQKLQYSSFELEAVKAKANEETKLHQEEVKNLLHLLKLARQERDEAK 67

Query: 71  KKCENLLLHKLFFNQHSAPISTIDDDPTKAF---DSQNAFSSSDC------------DES 130
            + + LL  K   N      ++    P  +F    S + FS+ +              + 
Sbjct: 68  DQLQKLLTIKT--NSSITESNSHGSSPVDSFFEPVSSSEFSNFNMVPEPINQVKFKNRQQ 127

Query: 131 IVSVSSPVPPPPD--ISDWISDKPLPEKGKLLQ 147
           +V+ +     P D  + + I  K LPEKGKLLQ
Sbjct: 128 LVNRNLKKIDPVDALMDEIIKGKALPEKGKLLQ 155

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BLAST of CsGy1G013240 vs. TrEMBL
Match: tr|A0A0A0LS86|A0A0A0LS86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097650 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 5.2e-95
Identity = 231/232 (99.57%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELK+RDDQVFHLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120
           QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120

Query: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 233
           XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH
Sbjct: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 232

[Close]

BLAST of CsGy1G013240 vs. TrEMBL
Match: tr|A0A1S3CKC5|A0A1S3CKC5_CUCME (arp2/3 complex-activating protein rickA OS=Cucumis melo OX=3656 GN=LOC103501451 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 2.7e-91
Identity = 224/232 (96.55%), Postives = 227/232 (97.84%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQV HLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120
           QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120

Query: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           SPVPPPP+ISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SPVPPPPEISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 233
           X  XXXXXXXXXXXX  SEAT+CGIVNKKRALSLCEESD+LPATKFQRLVFH
Sbjct: 181 XVAXXXXXXXXXXXXXXSEATNCGIVNKKRALSLCEESDSLPATKFQRLVFH 232

[Close]

BLAST of CsGy1G013240 vs. TrEMBL
Match: tr|I1M4G8|I1M4G8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100806513 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.7e-40
Identity = 143/253 (56.52%), Postives = 175/253 (69.17%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDN RSP+ +WAY+ Q  +++ELR SL+ TTLELEQTR+AVQEELKKRD+Q+ +LK+LL+
Sbjct: 1   MDNQRSPLLSWAYYFQGKSMEELRQSLIYTTLELEQTRVAVQEELKKRDEQLLNLKDLLS 60

Query: 61  QAIKERDEANKKCENLLLHKLFFN---QHSAP---ISTIDDDPTKAFDSQNAFSSSDCDE 120
           + I+ERDEA +KC+ LLL KL F    QH+AP   IS+I+D+P +  DS N  SSSDC+E
Sbjct: 61  KTIRERDEAQEKCQRLLLEKLVFQQQLQHAAPVSGISSIEDEPRRGIDSNNGHSSSDCEE 120

Query: 121 SIVSV----SSPVPPPPDISDWISDKPLPEKGKLLQAVM-----------XXXXXXXXXX 180
           SIVS       P P P  + +   DKPLPEKGKLLQAVM           XXXXXXXXXX
Sbjct: 121 SIVSSPVIDHLPQPQPQSMIELTPDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESD 233
           XXXXXXXXXXXXXXXXXXXXXXXX              S  T+CG +++KR    C+ SD
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXLHQDTFFNKTNGSSSTTTNCGRLSRKRV--FCDGSD 240

[Close]

BLAST of CsGy1G013240 vs. TrEMBL
Match: tr|A0A1Q3BZW3|A0A1Q3BZW3_CEPFO (DUF1635 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_16938 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.6e-38
Identity = 141/260 (54.23%), Postives = 173/260 (66.54%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           MDN RSP+ +WAY+ Q  +++ELRHSLL TTLELEQT++AVQEEL+KRDD+  HLK+LL+
Sbjct: 1   MDNQRSPLLSWAYYFQGKSMEELRHSLLYTTLELEQTKVAVQEELRKRDDEFIHLKDLLD 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHS----------APISTIDDDPTKAFDSQNAFSSS 120
           +AI +RDEA +KC+ L                     + IS+I+D+P + FDS N FSSS
Sbjct: 61  KAISQRDEAQEKCQRLXXXXXXXXXXXXXXXXXXXPLSGISSIEDEPRRGFDSNNGFSSS 120

Query: 121 DCDESIVS--VSSPVPP---------------PPDISDWISDKPLPEKGKLLQAVM-XXX 180
           DC+ESIVS  V  P+                 P +I D + DKPLPEKGKLLQAVM XXX
Sbjct: 121 DCEESIVSSPVIDPIXXXXXXXXXXXXXXXXMPQEIIDLVPDKPLPEKGKLLQAVMXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRAL 233
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            ++    +CG VN+KR  
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPPQLLQQDSLMNIGLNNCGKVNRKRV- 240

[Close]

BLAST of CsGy1G013240 vs. TrEMBL
Match: tr|A0A1S3CNT5|A0A1S3CNT5_CUCME (uncharacterized protein LOC103503032 OS=Cucumis melo OX=3656 GN=LOC103503032 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.4e-38
Identity = 92/166 (55.42%), Postives = 117/166 (70.48%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVFHLKNLLN 60
           M+N RS + +WAYF Q  NI+ELRHSL C TLELEQTR+AVQEEL+KRD+Q+ HLK+L +
Sbjct: 1   MENQRSALLSWAYFFQGKNIEELRHSLFCATLELEQTRVAVQEELRKRDEQLIHLKDLFS 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHS------APISTIDDDPTKAFDSQNAFSSSDCDE 120
           +AI+ERDEAN+K + LL+ KL   Q        + IS+I+D+P K  DS N FS SDC+E
Sbjct: 61  KAIRERDEANEKFQKLLIEKLLLQQQQQRTDPHSGISSIEDEPKKGIDSINGFSLSDCEE 120

Query: 121 SIVS--VSSPVPPP--------PDIS-DWISDKPLPEKGKLLQAVM 150
           SIVS     P+PPP        P I  + + +KPLPEKGKLL+AVM
Sbjct: 121 SIVSSPAIDPIPPPQFPPAXXXPHIQVELVPEKPLPEKGKLLEAVM 166

The following BLAST results are available for this feature:

BLAST of CsGy1G013240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147279.1	7.9e-95	99.57	PREDICTED: formin-3 [Cucumis sativus] >KGN64785.1 hypothetical protein Csa_1G097...	[more]
XP_008463249.1	4.0e-91	96.55	PREDICTED: arp2/3 complex-activating protein rickA [Cucumis melo]	[more]
XP_022948979.1	3.6e-55	65.98	uncharacterized protein LOC111452463 [Cucurbita moschata]	[more]
XP_022998894.1	2.3e-54	65.57	uncharacterized protein LOC111493418 [Cucurbita maxima]	[more]
XP_023525552.1	7.5e-53	64.34	uncharacterized protein LOC111789130 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G013240 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22930.1	2.7e-28	43.20	Protein of unknown function (DUF1635)	[more]
AT2G28140.1	2.4e-21	45.83	Protein of unknown function (DUF1635)	[more]
AT3G44940.1	1.2e-17	41.60	Protein of unknown function (DUF1635)	[more]
AT2G28690.1	4.6e-04	30.07	Protein of unknown function (DUF1635)	[more]

BLAST of CsGy1G013240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G013240 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS86\|A0A0A0LS86_CUCSA	5.2e-95	99.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097650 PE=4 SV=1	[more]
tr\|A0A1S3CKC5\|A0A1S3CKC5_CUCME	2.7e-91	96.55	arp2/3 complex-activating protein rickA OS=Cucumis melo OX=3656 GN=LOC103501451 ...	[more]
tr\|I1M4G8\|I1M4G8_SOYBN	3.7e-40	56.52	Uncharacterized protein OS=Glycine max OX=3847 GN=100806513 PE=4 SV=1	[more]
tr\|A0A1Q3BZW3\|A0A1Q3BZW3_CEPFO	2.6e-38	54.23	DUF1635 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_...	[more]
tr\|A0A1S3CNT5\|A0A1S3CNT5_CUCME	3.4e-38	55.42	uncharacterized protein LOC103503032 OS=Cucumis melo OX=3656 GN=LOC103503032 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012862	DUF1635

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G013240.1	CsGy1G013240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..117
None	No IPR available	PANTHER	PTHR33431:SF3	SUBFAMILY NOT NAMED	coord: 1..231
IPR012862	Protein of unknown function DUF1635	PFAM	PF07795	DUF1635	coord: 19..229 e-value: 9.2E-73 score: 244.7
IPR012862	Protein of unknown function DUF1635	PANTHER	PTHR33431	FAMILY NOT NAMED	coord: 1..231

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G013240	Cla005077	Watermelon (97103) v1	cgybwmB012
CsGy1G013240	Csa1G097650	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G013240	MELO3C004975	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G013240	ClCG03G002600	Watermelon (Charleston Gray)	cgybwcgB035
CsGy1G013240	CSPI01G13140	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G013240	CmaCh13G002280	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G013240	CmaCh01G005220	Cucurbita maxima (Rimu)	cgybcmaB110
CsGy1G013240	CmoCh01G005540	Cucurbita moschata (Rifu)	cgybcmoB104
CsGy1G013240	CmoCh13G002310	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G013240	Cp4.1LG20g07090	Cucurbita pepo (Zucchini)	cgybcpeB082
CsGy1G013240	Cp4.1LG02g12640	Cucurbita pepo (Zucchini)	cgybcpeB090
CsGy1G013240	MELO3C004975.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G013240	CsaV3_1G013310	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G013240	Bhi08G000227	Wax gourd	cgybwgoB046
CsGy1G013240	Bhi04G001050	Wax gourd	cgybwgoB015
CsGy1G013240	Carg12299	Silver-seed gourd	carcgybB0449
CsGy1G013240	Carg03207	Silver-seed gourd	carcgybB0342
CsGy1G013240	Carg26254	Silver-seed gourd	carcgybB1051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G013240	Bottle gourd (USVL1VR-Ls)	cgyblsiB045
CsGy1G013240	Watermelon (97103) v2	cgybwmbB034