CsaV3_1G013310 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G013310
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	arp2/3 complex-activating protein rickA
Location	chr1 : 8611595 .. 8613191 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGTTTTGATGCATACATACATATATATTAACATCCCGCTTTTCTCGCTCAAATCTTCTTATTCCTCTATTTATTCTCAACCCCACTTTCTTTCTCTTTTTTTCAAGTGATAATTTAACCACATCTCCCAACCCTAAAAACTTCTCCTTTTTCCTTTCCTTTTATAAAAACCTTACCATTCCCAACTTCTTAATCCCAATTTCCCCCTCCCCCTTTTTTCTCTCTAACTCCATGGATAACCATCGCTCCCCTGTTTTCACTTGGGCCTATTTCTTGCAAGCCAATGTGAGTTTCTCCTCTGTTTTCAATTTCGGTTTTTCATTTCCATTTCCGTTTTCGTTTTCGTTTTCATTTTTGTGCTTTTGGTTTTAACAGAACATTGATGAGTTACGCCATTCACTTTTATGCACAACTCTAGAGCTTGAACAAACTAGAATTGCTGTTCAAGAAGAGCTTAAGAGAAGAGATGATCAAGTTTTTCATCTCAAGAATCTCTTGAATCAAGCCATTAAAGAGAGAGATGAAGCTAATAAAAAATGTGAGAATCTTCTTCTTCACAAACTCTTCTTCAATCAACATTCTGCTCCAATTTCCACCATTGATGACGACCCCACCAAAGCATTTGACTCACAAAATGCTTTCTCTTCCTCCGATTGCGACGAGAGCATCGTATCTGTCTCATCTCCAGTCCCCCCACCGCCGGATATCTCCGATTGGATCTCTGATAAGCCATTGCCGGAAAAGGGTAAGCTCTTACAAGCTGTCATGAAAGCCGGTCCGCTTCTTCAAACTCTGCTTCTCGCTGGACCGCTTCCTCAGTGGAGACATCCTCCGCCGCCGCTTGAATCTTTCCACTTGCCGCCGGTTGCAATTCCACATCCTCCGCCACCGCCGCCGCTGGTACCTGTTCATTCTGAGGCTACTCATTGTGGGATTGTTAACAAGAAGAGGGCTCTGTCTTTGTGTGAGGAATCGGATACGTTACCGGCGACCAAATTCCAAAGGCTTGTTTTTCACTGACTTTCAACCAAAACAACTTAGATTAATCTTACATAATTATATATTAAATTAGAATCAGTCTCAAAAAAAGAAGAAAACACAAAATGGGTCATTTTTTGTGACTTTATTTTGTATAGTTGTTTGTTCTATATATATTACCCCCCAAAACAAAACCCCTAGTTTAGTTAGCTTGGAGTAACTCAAAAAATGGGTTCTCTCTTTCTTTCTTTTTCTTGGCCTCTCCATAGAAATTGTGTGATATGTGACGACATTGATATAGGATGTAGCGTAGCTGATCTGAGAATAGTTGAATTGATTTAAGTATTAGTAAATGTGGAATGTACGGATTTGTAATAGTAGTTTTTTTTTATAAAAAAAATAGTGAAGTTAGAGTGATAGTTTGATTAGGGTTTGGGGGTATTAAGAGAGATTGAGGAGTCTTAAGATGTGTGGGGGAGAGTAGTTGGGGAGGAAAAGCATATGGTCCTACATATCAAGAAGGATCTTTGTTGTTTGTGTGATTTTGTATGGATTTGTATACCAAAAAGATTTAGACCAAGTTTAATTTTATTGTATTAATTCAACTCTCTTTTCTT

mRNA sequence

ATGGATAACCATCGCTCCCCTGTTTTCACTTGGGCCTATTTCTTGCAAGCCAATAACATTGATGAGTTACGCCATTCACTTTTATGCACAACTCTAGAGCTTGAACAAACTAGAATTGCTGTTCAAGAAGAGCTTAAGAGAAGAGATGATCAAGTTTTTCATCTCAAGAATCTCTTGAATCAAGCCATTAAAGAGAGAGATGAAGCTAATAAAAAATGTGAGAATCTTCTTCTTCACAAACTCTTCTTCAATCAACATTCTGCTCCAATTTCCACCATTGATGACGACCCCACCAAAGCATTTGACTCACAAAATGCTTTCTCTTCCTCCGATTGCGACGAGAGCATCGTATCTGTCTCATCTCCAGTCCCCCCACCGCCGGATATCTCCGATTGGATCTCTGATAAGCCATTGCCGGAAAAGGGTAAGCTCTTACAAGCTGTCATGAAAGCCGGTCCGCTTCTTCAAACTCTGCTTCTCGCTGGACCGCTTCCTCAGTGGAGACATCCTCCGCCGCCGCTTGAATCTTTCCACTTGCCGCCGGTTGCAATTCCACATCCTCCGCCACCGCCGCCGCTGGTACCTGTTCATTCTGAGGCTACTCATTGTGGGATTGTTAACAAGAAGAGGGCTCTGTCTTTGTGTGAGGAATCGGATACGTTACCGGCGACCAAATTCCAAAGGCTTGTTTTTCACTGA

Coding sequence (CDS)

ATGGATAACCATCGCTCCCCTGTTTTCACTTGGGCCTATTTCTTGCAAGCCAATAACATTGATGAGTTACGCCATTCACTTTTATGCACAACTCTAGAGCTTGAACAAACTAGAATTGCTGTTCAAGAAGAGCTTAAGAGAAGAGATGATCAAGTTTTTCATCTCAAGAATCTCTTGAATCAAGCCATTAAAGAGAGAGATGAAGCTAATAAAAAATGTGAGAATCTTCTTCTTCACAAACTCTTCTTCAATCAACATTCTGCTCCAATTTCCACCATTGATGACGACCCCACCAAAGCATTTGACTCACAAAATGCTTTCTCTTCCTCCGATTGCGACGAGAGCATCGTATCTGTCTCATCTCCAGTCCCCCCACCGCCGGATATCTCCGATTGGATCTCTGATAAGCCATTGCCGGAAAAGGGTAAGCTCTTACAAGCTGTCATGAAAGCCGGTCCGCTTCTTCAAACTCTGCTTCTCGCTGGACCGCTTCCTCAGTGGAGACATCCTCCGCCGCCGCTTGAATCTTTCCACTTGCCGCCGGTTGCAATTCCACATCCTCCGCCACCGCCGCCGCTGGTACCTGTTCATTCTGAGGCTACTCATTGTGGGATTGTTAACAAGAAGAGGGCTCTGTCTTTGTGTGAGGAATCGGATACGTTACCGGCGACCAAATTCCAAAGGCTTGTTTTTCACTGA

Protein sequence

MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLNQAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESFHLPPVAIPHPPPPPPLVPVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH

Homology

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BLAST of CsaV3_1G013310 vs. NCBI nr
Match: XP_004147279.1 (PREDICTED: formin-3 [Cucumis sativus] >KGN64785.1 hypothetical protein Csa_1G097650 [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 2.1e-95
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120
           QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120

Query: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 233
           XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH
Sbjct: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 232

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BLAST of CsaV3_1G013310 vs. NCBI nr
Match: XP_008463249.1 (PREDICTED: arp2/3 complex-activating protein rickA [Cucumis melo])

HSP 1 Score: 343.6 bits (880), Expect = 5.3e-91
Identity = 223/232 (96.12%), Postives = 227/232 (97.84%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELK+RDDQV HLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120
           QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120

Query: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           SPVPPPP+ISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SPVPPPPEISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 233
           X  XXXXXXXXXXXX  SEAT+CGIVNKKRALSLCEESD+LPATKFQRLVFH
Sbjct: 181 XVAXXXXXXXXXXXXXXSEATNCGIVNKKRALSLCEESDSLPATKFQRLVFH 232

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BLAST of CsaV3_1G013310 vs. NCBI nr
Match: XP_022948979.1 (uncharacterized protein LOC111452463 [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 3.6e-55
Identity = 160/244 (65.57%), Postives = 175/244 (71.72%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL ++DDQ+ HLKNLLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANKKCENL------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAFS 120
           QAI+ERDEAN+KC+ L                         ISTIDD P K FDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXX 180
           SSDCDESIVS        P+I DW+ +KPLPEKGKLLQAVM  XXXXXXXXXXXXXXXXX
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQR 233
           XXXXXXXXXXXXX                   T+CGIVNKKRALSLCE+SD+  ATKFQR
Sbjct: 181 XXXXXXXXXXXXXVTIPLPPPLPSLAD-----TNCGIVNKKRALSLCEDSDSQTATKFQR 232

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BLAST of CsaV3_1G013310 vs. NCBI nr
Match: XP_022998894.1 (uncharacterized protein LOC111493418 [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 2.3e-54
Identity = 159/244 (65.16%), Postives = 175/244 (71.72%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL ++DDQ+ HLKNLLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANKKCENL------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAFS 120
           QAI+ERDEAN+KC+ L                         ISTIDD P K FDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXAISTIDDYPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXX 180
           SSDCDESIVS        P+I DW+ +KPLPEKGKLLQAVM  XXXXXXXXXXXXXXXXX
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQR 233
           XXXXXXXXXXXXX                   ++CGIVNKKRALSLCE+SD+  ATKFQR
Sbjct: 181 XXXXXXXXXXXXXVTIPLPPPLPSLAD-----SNCGIVNKKRALSLCEDSDSQTATKFQR 232

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BLAST of CsaV3_1G013310 vs. NCBI nr
Match: XP_023525552.1 (uncharacterized protein LOC111789130 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.9 bits (551), Expect = 7.5e-53
Identity = 156/244 (63.93%), Postives = 172/244 (70.49%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL ++DDQ+ HLKNLLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIKERDEANKKCENL------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAFS 120
           QAI+ERDEAN+KC+ L                         ISTIDD P K FDSQNAFS
Sbjct: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAFS 120

Query: 121 SSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXX 180
           SSDCDESIVS        P+I DW+ +KPLPEKGKLLQAVM  XXXXXXXXXXXXXXXXX
Sbjct: 121 SSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNAXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQR 233
           XXXXXXXXXXXX                    ++CGIVNKKRAL L E+SD+  ATKFQR
Sbjct: 181 XXXXXXXXXXXXPVRIPLPPPLPSLAD-----SNCGIVNKKRALFLSEDSDSQTATKFQR 232

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BLAST of CsaV3_1G013310 vs. TAIR10
Match: AT5G22930.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 121.7 bits (304), Expect = 6.0e-28
Identity = 72/169 (42.60%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDN  + +  W Y+  A   +E+R SLL TTLEL+QT++   EE+++RD+Q+ HLK++L 
Sbjct: 1   MDNQSNALLGWPYYSHAKTTEEIRQSLLYTTLELDQTKMFAYEEIRKRDEQLIHLKDILT 60

Query: 61  QAIKERDEANKKCENLLL--HKLFFNQHSAP----ISTIDDDPT--KAFDSQNAFSSSDC 120
           + IKERDEA +KC+ L+   H L   +H  P     S+I+D+    +   S  +FSSSDC
Sbjct: 61  KTIKERDEALEKCQRLMFDSHSLQQQKHMTPPLSGASSIEDEQVQPQQLRSNKSFSSSDC 120

Query: 121 DESIVSVSSPV--PPPPDISD----------WISDKPLPEKGKLLQAVM 150
           +ESI+S +  +  PPP  + +           + DKPLPEKGKLLQAV+
Sbjct: 121 EESIMSPTDHIMNPPPCQLEEVSGTEIIMDPLLQDKPLPEKGKLLQAVI 169

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BLAST of CsaV3_1G013310 vs. TAIR10
Match: AT2G28140.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-21
Identity = 66/144 (45.83%), Postives = 91/144 (63.19%), Query Frame = 0


Query: 8   VFTWAYFLQA--NNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLNQAIKE 67
           + +W++  Q     I+ELRHSLL TT+ELEQTR+   EEL  +DDQ+  LK+LLN+AIKE
Sbjct: 9   LLSWSHQNQCGIKTIEELRHSLLHTTMELEQTRMVASEELIAKDDQIMQLKDLLNKAIKE 68

Query: 68  RDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVSSPVPP 127
           +DEA ++ + +LL + F  QH    +  + DP     + N F SSD +ESIV   S   P
Sbjct: 69  KDEAQERYKRILLDQNFLLQHQ---TDEEQDP-----NINGFHSSDGEESIV---SSFEP 128

Query: 128 PPDISDWISDKPLPEKGKLLQAVM 150
           P +I     +  LPEKGKLL+AV+
Sbjct: 129 PVEIELDFPEMTLPEKGKLLKAVV 141

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BLAST of CsaV3_1G013310 vs. TAIR10
Match: AT3G44940.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-17
Identity = 108/262 (41.22%), Postives = 141/262 (53.82%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MD   S + +W YF      +ELR +L+ TT+ELEQT++   EEL++RD+Q+ HL+++L 
Sbjct: 1   MDQSNS-LLSWTYFSHGKTTEELRQTLVYTTMELEQTKLVAHEELRKRDEQLIHLEDVLT 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTID--------------------DDPTKA 120
           + +KERDEA +K  +L                                            
Sbjct: 61  KTLKERDEALEKYNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQPQQPQ 120

Query: 121 FDSQNAFSSSDCDESIV--SVSSPVPPPPDI--------SDWISDKPLPEKGKLLQAVMX 180
            +S  +FSSSD +ESI+  SV  PV     I        +  + DKPLPEKGKLLQAV+X
Sbjct: 121 LNSNKSFSSSDTEESIMSPSVIDPVTMNQQIEVSGDEMLATLLPDKPLPEKGKLLQAVIX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKR 233
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 +   CG  NKKR
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIPLP---------QFQNNGCGNSNKKR 240

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BLAST of CsaV3_1G013310 vs. TAIR10
Match: AT2G28690.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 42.4 bits (98), Expect = 4.6e-04
Identity = 46/153 (30.07%), Postives = 70/153 (45.75%), Query Frame = 0


Query: 11  WAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLNQAIKERDEAN 70
           W Y     ++DELR  L  ++ ELE  +    EE K   ++V +L +LL  A +ERDEA 
Sbjct: 8   WFY---QESMDELRQKLQYSSFELEAVKAKANEETKLHQEEVKNLLHLLKLARQERDEAK 67

Query: 71  KKCENLLLHKLFFNQHSAPISTIDDDPTKAF---DSQNAFSSSDC------------DES 130
            + + LL  K   N      ++    P  +F    S + FS+ +              + 
Sbjct: 68  DQLQKLLTIKT--NSSITESNSHGSSPVDSFFEPVSSSEFSNFNMVPEPINQVKFKNRQQ 127

Query: 131 IVSVSSPVPPPPD--ISDWISDKPLPEKGKLLQ 147
           +V+ +     P D  + + I  K LPEKGKLLQ
Sbjct: 128 LVNRNLKKIDPVDALMDEIIKGKALPEKGKLLQ 155

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BLAST of CsaV3_1G013310 vs. TrEMBL
Match: tr|A0A0A0LS86|A0A0A0LS86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097650 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.4e-95
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120
           QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120

Query: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 233
           XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH
Sbjct: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 232

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BLAST of CsaV3_1G013310 vs. TrEMBL
Match: tr|A0A1S3CKC5|A0A1S3CKC5_CUCME (arp2/3 complex-activating protein rickA OS=Cucumis melo OX=3656 GN=LOC103501451 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 3.5e-91
Identity = 223/232 (96.12%), Postives = 227/232 (97.84%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELK+RDDQV HLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120
           QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS
Sbjct: 61  QAIKERDEANKKCENLLLHKLFFNQHSAPISTIDDDPTKAFDSQNAFSSSDCDESIVSVS 120

Query: 121 SPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           SPVPPPP+ISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SPVPPPPEISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQRLVFH 233
           X  XXXXXXXXXXXX  SEAT+CGIVNKKRALSLCEESD+LPATKFQRLVFH
Sbjct: 181 XVAXXXXXXXXXXXXXXSEATNCGIVNKKRALSLCEESDSLPATKFQRLVFH 232

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BLAST of CsaV3_1G013310 vs. TrEMBL
Match: tr|I1M4G8|I1M4G8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100806513 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.7e-40
Identity = 142/253 (56.13%), Postives = 175/253 (69.17%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDN RSP+ +WAY+ Q  +++ELR SL+ TTLELEQTR+AVQEELK+RD+Q+ +LK+LL+
Sbjct: 1   MDNQRSPLLSWAYYFQGKSMEELRQSLIYTTLELEQTRVAVQEELKKRDEQLLNLKDLLS 60

Query: 61  QAIKERDEANKKCENLLLHKLFFN---QHSAP---ISTIDDDPTKAFDSQNAFSSSDCDE 120
           + I+ERDEA +KC+ LLL KL F    QH+AP   IS+I+D+P +  DS N  SSSDC+E
Sbjct: 61  KTIRERDEAQEKCQRLLLEKLVFQQQLQHAAPVSGISSIEDEPRRGIDSNNGHSSSDCEE 120

Query: 121 SIVSV----SSPVPPPPDISDWISDKPLPEKGKLLQAVM-----------XXXXXXXXXX 180
           SIVS       P P P  + +   DKPLPEKGKLLQAVM           XXXXXXXXXX
Sbjct: 121 SIVSSPVIDHLPQPQPQSMIELTPDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESD 233
           XXXXXXXXXXXXXXXXXXXXXXXX              S  T+CG +++KR    C+ SD
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXLHQDTFFNKTNGSSSTTTNCGRLSRKRV--FCDGSD 240

[Close]

BLAST of CsaV3_1G013310 vs. TrEMBL
Match: tr|A0A1Q3BZW3|A0A1Q3BZW3_CEPFO (DUF1635 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_16938 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.6e-38
Identity = 140/260 (53.85%), Postives = 173/260 (66.54%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           MDN RSP+ +WAY+ Q  +++ELRHSLL TTLELEQT++AVQEEL++RDD+  HLK+LL+
Sbjct: 1   MDNQRSPLLSWAYYFQGKSMEELRHSLLYTTLELEQTKVAVQEELRKRDDEFIHLKDLLD 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHS----------APISTIDDDPTKAFDSQNAFSSS 120
           +AI +RDEA +KC+ L                     + IS+I+D+P + FDS N FSSS
Sbjct: 61  KAISQRDEAQEKCQRLXXXXXXXXXXXXXXXXXXXPLSGISSIEDEPRRGFDSNNGFSSS 120

Query: 121 DCDESIVS--VSSPVPP---------------PPDISDWISDKPLPEKGKLLQAVM-XXX 180
           DC+ESIVS  V  P+                 P +I D + DKPLPEKGKLLQAVM XXX
Sbjct: 121 DCEESIVSSPVIDPIXXXXXXXXXXXXXXXXMPQEIIDLVPDKPLPEKGKLLQAVMXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRAL 233
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            ++    +CG VN+KR  
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPPQLLQQDSLMNIGLNNCGKVNRKRV- 240

[Close]

BLAST of CsaV3_1G013310 vs. TrEMBL
Match: tr|A0A1S3CNT5|A0A1S3CNT5_CUCME (uncharacterized protein LOC103503032 OS=Cucumis melo OX=3656 GN=LOC103503032 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.7e-38
Identity = 91/166 (54.82%), Postives = 117/166 (70.48%), Query Frame = 0


Query: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60
           M+N RS + +WAYF Q  NI+ELRHSL C TLELEQTR+AVQEEL++RD+Q+ HLK+L +
Sbjct: 1   MENQRSALLSWAYFFQGKNIEELRHSLFCATLELEQTRVAVQEELRKRDEQLIHLKDLFS 60

Query: 61  QAIKERDEANKKCENLLLHKLFFNQHS------APISTIDDDPTKAFDSQNAFSSSDCDE 120
           +AI+ERDEAN+K + LL+ KL   Q        + IS+I+D+P K  DS N FS SDC+E
Sbjct: 61  KAIRERDEANEKFQKLLIEKLLLQQQQQRTDPHSGISSIEDEPKKGIDSINGFSLSDCEE 120

Query: 121 SIVS--VSSPVPPP--------PDIS-DWISDKPLPEKGKLLQAVM 150
           SIVS     P+PPP        P I  + + +KPLPEKGKLL+AVM
Sbjct: 121 SIVSSPAIDPIPPPQFPPAXXXPHIQVELVPEKPLPEKGKLLEAVM 166

The following BLAST results are available for this feature:

BLAST of CsaV3_1G013310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147279.1	2.1e-95	100.00	PREDICTED: formin-3 [Cucumis sativus] >KGN64785.1 hypothetical protein Csa_1G097...	[more]
XP_008463249.1	5.3e-91	96.12	PREDICTED: arp2/3 complex-activating protein rickA [Cucumis melo]	[more]
XP_022948979.1	3.6e-55	65.57	uncharacterized protein LOC111452463 [Cucurbita moschata]	[more]
XP_022998894.1	2.3e-54	65.16	uncharacterized protein LOC111493418 [Cucurbita maxima]	[more]
XP_023525552.1	7.5e-53	63.93	uncharacterized protein LOC111789130 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G013310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22930.1	6.0e-28	42.60	Protein of unknown function (DUF1635)	[more]
AT2G28140.1	2.4e-21	45.83	Protein of unknown function (DUF1635)	[more]
AT3G44940.1	1.6e-17	41.22	Protein of unknown function (DUF1635)	[more]
AT2G28690.1	4.6e-04	30.07	Protein of unknown function (DUF1635)	[more]

BLAST of CsaV3_1G013310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G013310 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS86\|A0A0A0LS86_CUCSA	1.4e-95	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097650 PE=4 SV=1	[more]
tr\|A0A1S3CKC5\|A0A1S3CKC5_CUCME	3.5e-91	96.12	arp2/3 complex-activating protein rickA OS=Cucumis melo OX=3656 GN=LOC103501451 ...	[more]
tr\|I1M4G8\|I1M4G8_SOYBN	3.7e-40	56.13	Uncharacterized protein OS=Glycine max OX=3847 GN=100806513 PE=4 SV=1	[more]
tr\|A0A1Q3BZW3\|A0A1Q3BZW3_CEPFO	2.6e-38	53.85	DUF1635 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_...	[more]
tr\|A0A1S3CNT5\|A0A1S3CNT5_CUCME	7.7e-38	54.82	uncharacterized protein LOC103503032 OS=Cucumis melo OX=3656 GN=LOC103503032 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012862	DUF1635

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G013310.1	CsaV3_1G013310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79
None	No IPR available	PANTHER	PTHR33431:SF3	SUBFAMILY NOT NAMED	coord: 1..231
IPR012862	Protein of unknown function DUF1635	PFAM	PF07795	DUF1635	coord: 19..229 e-value: 8.7E-73 score: 244.8
IPR012862	Protein of unknown function DUF1635	PANTHER	PTHR33431	FAMILY NOT NAMED	coord: 1..231

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G013310	CSPI01G13140	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G013310	Cucsa.207650	Cucumber (Gy14) v1	cgycucB332
CsaV3_1G013310	CmaCh01G005220	Cucurbita maxima (Rimu)	cmacucB0518
CsaV3_1G013310	CmoCh01G005540	Cucurbita moschata (Rifu)	cmocucB0505
CsaV3_1G013310	Cp4.1LG02g12640	Cucurbita pepo (Zucchini)	cpecucB0657
CsaV3_1G013310	Cp4.1LG20g07090	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G013310	CsGy1G013240	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G013310	Carg03207	Silver-seed gourd	carcucB0363
CsaV3_1G013310	Carg12299	Silver-seed gourd	carcucB0474
CsaV3_1G013310	Carg26254	Silver-seed gourd	carcucB1116
CsaV3_1G013310	Cla005077	Watermelon (97103) v1	cucwmB015
CsaV3_1G013310	MELO3C004975	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G013310	ClCG03G002600	Watermelon (Charleston Gray)	cucwcgB040
CsaV3_1G013310	Lsi03G001380	Bottle gourd (USVL1VR-Ls)	cuclsiB053
CsaV3_1G013310	MELO3C004975.2	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G013310	Cla97C03G053660	Watermelon (97103) v2	cucwmbB032
CsaV3_1G013310	Bhi04G001050	Wax gourd	cucwgoB017
CsaV3_1G013310	Bhi08G000227	Wax gourd	cucwgoB051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G013310	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G013310	Cucurbita moschata (Rifu)	cmocucB0221