CsGy1G012990 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pentatricopeptide repeat-containing protein At2g13600-like
Location	Chr1 : 8422902 .. 8425569 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTCAAGTTTGCACTTTGCACGCCATATCCAATCTCCTCCACGGCTACCCTGCAAAAGGAGACCACCACGACTCAGCCGTCTGGGATTCCCGAGCTCCACCGTCTCCTCAACTTCGAGTTCGACGTTGCACCCAAACCAATGAAGAAGAATCGGTAGGAAGTGGTCATCGAAAAACCCAATTTCTAGAAGTCTCCAACTGATGCTCTTCATCTTGCTATGATACAATCAACTTTCATCCGCCCAAAAATCTTAGCCAAAGCGATGTCAATATGTTACTAATTACAAAAGGAAAACTGGAAACTGTGTTAATGTCTTTGAAGCATTGGGTTACTTTGCAGAATGTGCAGCTTAGGAGCAATATTGACCAAGTATTCTCTGTGCTCTGCTCTTAGTTCTTGTGCTAAAACACATAATCTGTTTTTGGGTTTGCAAATTCATGCTCAAATCGTCAAAATCGGATTTGAAGAGAACTTATTTTTGAACAGTTCACTGGTTGATTTATACTCCAAATGTAATGCCATTGTGAATGCCAAAAGGGTCTTCTCTCAGATGAAGACTCATGACCATGTATCTTGGACTTCTATAATATCAGGGCTTTCTCAAAATGGTTGTGGTAGTGAAGCCATCCTGATGTTCAAGAATATGTTGGTAACTCAGGTTAGACCCAACTGTTTTACTTATGCCACTGTTATTAGTTCATGCCCAACTTTGAAGAATGAACTTCAGATTCATCTTGCAACTTTGCTTCATGCCCATGTTATCAAATTTGGTTTTACTTTTAGCAGTTTTGTAATTAGCTCTACTATTGATTGTTACTCTAAACTAGGAAGAATACGAGAAGCAGCTCTGCTCTTTTCTGAGTCCAGTGTGAAGGATAATATCATATTTAATTCTATGATATCAGGGTATTCTCAAAACTTGTATGGGGAAGAAGCGTTAAAACTGTTTGTAGAAATGAGAGCTAGTAATTTGAGCCCAACTGATCATACATTAACTAGTGTTTTAAATGCTTGTGGGTGTCTAACAGTACTTGAACAAGGAAGGCAAGTTCACTCTCTTGTTACAAAAATGGGATCAGAAAATAATGTGTTTGTAGTCTGTTCTTTACTTGATATGTACTCAAAGTGTGGCAGCATCGATGAGGCATTTTCAATATTCAATCAGACAGTACAAAAGAACAGTGTGCTGTCTACATCGATGATTACGGCTTTTGCTCAATGTGGTAGAGGTTTAGAAGCATTAAAGCTCTTTGAGAGTTTGTTGACTGAAGATAGTTTTGTGCCTGATCATATCTGTTTTACCGCAGTTCTAACAGCTTGCAATCATGCAGGATTACTAGATGAGGCAGTTGAATATTTCAATAAAATGAGGCGTGAATACCATTTAGATCCTCAAATTGATCATTATGCTTGTTTGATTGATCTCTATGCCAGAAATGGGAATGTAGAAAAGGCCAAGCAAATGATGGAGCAAATGCCTTACGAATCTAATTACGTAGTTTTGTGTTCCCTCTTGGGTGCTTGTAAAGTTCATGCAGAGGTCGAGCTTGGGAGGGAGGTGGCACATCGACTCATTGAGATGGATCCAAGTAATGCTGCACCATATTTGACGCTTGCCCATATCTCTGCGAAAGCTGGTTTATGGACACAGGTGGGTGAGATTAGAAAAGAGATGCAACAAAAAAGGGTAAGGAAAAGTGCAGGGTGGAGTTGGATTGAGATAGATAAGAAAACTCATGTATTCTCAGTTGGTGATGCTGCTCATCCGAAATCATGTGAGATTTATTCAAAACTTGATCAACTGAATTTGGATATGAAAGCAGCTGAACAATCATCAAAAGCACTTGAGTATGACGTTGAGTGTTAATGTCAGTGATGGAATAGAGTTATTGTTTGAAGTTCTAATAGCAGACTAGTTGGAAATGAGAATCCAGGGGATTCACCTTTGCAGTGAATTCTTGGATGAGCAATACTCATATTTGTTTAGGATGGTTGGATTAGAAAAAATGGCGGAGACTACCAGGGTGTGGCAATCGATTGCAACCCATAGGTCTGTTTATGACAATAAAACACCAAAGTTAAGATTAATCAAATTGGAAGATGGGATCGTTGGCATTTTTGTTCCAGTAGGGTTACTGTGTTCCAATTGCAGGAAGGAAAAGAAAATGCCACTAGAAATCAAAGTAAGCAATCATGAATTAATAGAGAGAATTGGGTAGATGAAGATAGTGAAGAACATGGAATTGCAAAAGAGAAGCCTGAAAGGGGAAAAATGAACTATTCGGCCATGTTGATGAAGACCTTGGTTCAAGTAGCAAGAGCGAGAGCGAGGTTAAGAATTGAGAAACAACATAGAAGTGAAAGCTGATAATTGAGATGAAGAGAGTGAGTATCTAGGCCAACACGCTTGATTCAATTGGTCATTTATATAATTTCATGGATTGATGATGATGTGAAAAAAAATCAAAAGAACTTAGATTTTCAAAAAGGCAGATCAAATTTCATTTGGACATCTCGAAAATAGATAGATTGGTATAAAGATGTAGTCAAAACTCAGGAACCACTCCCATGGACACTTGTGCTTTCCTTTTTCAAGTTGTGTTTGAATTATGTCTTTGTAGTTCTTTTGATATTATAAATGAAGGCAAAATACTGAAGTCCTTTAG

mRNA sequence

CCTCTCAAGTTTGCACTTTGCACGCCATATCCAATCTCCTCCACGGCTACCCTGCAAAAGGAGACCACCACGACTCAGCCGTCTGGGATTCCCGAGCTCCACCGTCTCCTCAACTTCGAGTTCGACGTTGCACCCAAACCAATGAAGAAGAATCGAATGTGCAGCTTAGGAGCAATATTGACCAAGTATTCTCTGTGCTCTGCTCTTAGTTCTTGTGCTAAAACACATAATCTGTTTTTGGGTTTGCAAATTCATGCTCAAATCGTCAAAATCGGATTTGAAGAGAACTTATTTTTGAACAGTTCACTGGTTGATTTATACTCCAAATGTAATGCCATTGTGAATGCCAAAAGGGTCTTCTCTCAGATGAAGACTCATGACCATGTATCTTGGACTTCTATAATATCAGGGCTTTCTCAAAATGGTTGTGGATTACTAGATGAGGCAGTTGAATATTTCAATAAAATGAGGCGTGAATACCATTTAGATCCTCAAATTGATCATTATGCTTGTTTGATTGATCTCTATGCCAGAAATGGGAATGTAGAAAAGGCCAAGCAAATGATGGAGCAAATGCCTTACGAATCTAATTACGTAGTTTTGTGTTCCCTCTTGGGTGCTTGTAAAGTTCATGCAGAGGTCGAGCTTGGGAGGGAGGTGGCACATCGACTCATTGAGATGGATCCAAGTAATGCTGCACCATATTTGACGCTTGCCCATATCTCTGCGAAAGCTGGTTTATGGACACAGGTGGGTGAGATTAGAAAAGAGATGCAACAAAAAAGGGTAAGGAAAAGTGCAGGGTGGAGTTGGATTGAGATAGATAAGAAAACTCATGTATTCTCAGTTGGTGATGCTGCTCATCCGAAATCATGTGAGATTTATTCAAAACTTGATCAACTGAATTTGGATATGAAAGCAGCTGAACAATCATCAAAAGCACTTGAGTATGACGTTGAGTGTTAATGTCAGTGATGGAATAGAGTTATTGTTTGAAGTTCTAATAGCAGACTAGTTGGAAATGAGAATCCAGGGGATTCACCTTTGCAGTGAATTCTTGGATGAGCAATACTCATATTTGTTTAGGATGGTTGGATTAGAAAAAATGGCGGAGACTACCAGGGTGTGGCAATCGATTGCAACCCATAGGTCTGTTTATGACAATAAAACACCAAAGTTAAGATTAATCAAATTGGAAGATGGGATCGTTGGCATTTTTGTTCCAGTAGGGTTACTGTGTTCCAATTGCAGGAAGGAAAAGAAAATGCCACTAGAAATCAAAGTAAGCAATCATGAATTAATAGAGAGAATTGGGTAGATGAAGATAGTGAAGAACATGGAATTGCAAAAGAGAAGCCTGAAAGGGGAAAAATGAACTATTCGGCCATGTTGATGAAGACCTTGGTTCAAGTAGCAAGAGCGAGAGCGAGGTTAAGAATTGAGAAACAACATAGAAGTGAAAGCTGATAATTGAGATGAAGAGAGTGAGTATCTAGGCCAACACGCTTGATTCAATTGGTCATTTATATAATTTCATGGATTGATGATGATGTGAAAAAAAATCAAAAGAACTTAGATTTTCAAAAAGGCAGATCAAATTTCATTTGGACATCTCGAAAATAGATAGATTGGTATAAAGATGTAGTCAAAACTCAGGAACCACTCCCATGGACACTTGTGCTTTCCTTTTTCAAGTTGTGTTTGAATTATGTCTTTGTAGTTCTTTTGATATTATAAATGAAGGCAAAATACTGAAGTCCTTTAG

Coding sequence (CDS)

CCTCTCAAGTTTGCACTTTGCACGCCATATCCAATCTCCTCCACGGCTACCCTGCAAAAGGAGACCACCACGACTCAGCCGTCTGGGATTCCCGAGCTCCACCGTCTCCTCAACTTCGAGTTCGACGTTGCACCCAAACCAATGAAGAAGAATCGAATGTGCAGCTTAGGAGCAATATTGACCAAGTATTCTCTGTGCTCTGCTCTTAGTTCTTGTGCTAAAACACATAATCTGTTTTTGGGTTTGCAAATTCATGCTCAAATCGTCAAAATCGGATTTGAAGAGAACTTATTTTTGAACAGTTCACTGGTTGATTTATACTCCAAATGTAATGCCATTGTGAATGCCAAAAGGGTCTTCTCTCAGATGAAGACTCATGACCATGTATCTTGGACTTCTATAATATCAGGGCTTTCTCAAAATGGTTGTGGATTACTAGATGAGGCAGTTGAATATTTCAATAAAATGAGGCGTGAATACCATTTAGATCCTCAAATTGATCATTATGCTTGTTTGATTGATCTCTATGCCAGAAATGGGAATGTAGAAAAGGCCAAGCAAATGATGGAGCAAATGCCTTACGAATCTAATTACGTAGTTTTGTGTTCCCTCTTGGGTGCTTGTAAAGTTCATGCAGAGGTCGAGCTTGGGAGGGAGGTGGCACATCGACTCATTGAGATGGATCCAAGTAATGCTGCACCATATTTGACGCTTGCCCATATCTCTGCGAAAGCTGGTTTATGGACACAGGTGGGTGAGATTAGAAAAGAGATGCAACAAAAAAGGGTAAGGAAAAGTGCAGGGTGGAGTTGGATTGAGATAGATAAGAAAACTCATGTATTCTCAGTTGGTGATGCTGCTCATCCGAAATCATGTGAGATTTATTCAAAACTTGATCAACTGAATTTGGATATGAAAGCAGCTGAACAATCATCAAAAGCACTTGAGTATGACGTTGAGTGTTAA

Protein sequence

PLKFALCTPYPISSTATLQKETTTTQPSGIPELHRLLNFEFDVAPKPMKKNRMCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEYDVEC

Homology

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BLAST of CsGy1G012990 vs. NCBI nr
Match: XP_011653616.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis sativus])

HSP 1 Score: 452.6 bits (1163), Expect = 1.1e-123
Identity = 269/508 (52.95%), Postives = 269/508 (52.95%), Query Frame = 0


Query: 53  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 112
           MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA
Sbjct: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60

Query: 113 IVNAKRVFSQMKTHDHVSWTSIISGLSQNGC----------------------------- 172
           IVNAKRVFSQMKTHDHVSWTSIISGLSQNGC                             
Sbjct: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQVRPNCFTYATVISS 120

Query: 173 ------------------------------------------------------------ 232
                                                                       
Sbjct: 121 CPTLKNELQIHLATLLHAHVIKFGFTFSSFVISSTIDCYSKLGRIREAALLFSESSVKDN 180

Query: 233 ------------------------------------------------------------ 292
                                                                       
Sbjct: 181 IIFNSMISGYSQNLYGEEALKLFVEMRASNLSPTDHTLTSVLNACGCLTVLEQGRQVHSL 240

Query: 293 ------------------------------------------------------------ 322
                                                                       
Sbjct: 241 VTKMGSENNVFVVCSLLDMYSKCGSIDEAFSIFNQTVQKNSVLSTSMITAFAQCGRGLEA 300

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BLAST of CsGy1G012990 vs. NCBI nr
Match: XP_008464861.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo])

HSP 1 Score: 423.7 bits (1088), Expect = 5.6e-115
Identity = 256/508 (50.39%), Postives = 260/508 (51.18%), Query Frame = 0


Query: 53  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 112
           MCSLGA LT YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA
Sbjct: 1   MCSLGAKLTTYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60

Query: 113 IVNAKRVFSQMKTHDHVSWTSIISGLSQNGC----------------------------- 172
           IVNAKRVFS+MKTHD VSWTSIISGLSQNGC                             
Sbjct: 61  IVNAKRVFSRMKTHDQVSWTSIISGLSQNGCGSEAILMFKKMLVTQVRPNCFTYATVISS 120

Query: 173 ------------------------------------------------------------ 232
                                                                       
Sbjct: 121 CPTLKNELQIHLATLLHAHVIKFGFTFSSFVISSTIDCYSKLGRIQEASLLFSETSVKDN 180

Query: 233 ------------------------------------------------------------ 292
                                                                       
Sbjct: 181 IIFNSMISGYSQNLCGEEALKLFVEMRASNLSPTDHTLTSVLNACGCLTVLEQGRQVHSL 240

Query: 293 ------------------------------------------------------------ 322
                                                                       
Sbjct: 241 LTKMGSENNVFVVCSLLDMYSKCGSIDEAFSLFNQTVQKNSVLSTSMIMAFAQCGRGLEA 300

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BLAST of CsGy1G012990 vs. NCBI nr
Match: KGN64758.1 (hypothetical protein Csa_1G089470 [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 4.1e-102
Identity = 186/224 (83.04%), Postives = 201/224 (89.73%), Query Frame = 0


Query: 103 LVDLYSKCNAIVNAKRVFSQMKTH-----DHVSWTSIISGLSQNGCGLLDEAVEYFNKMR 162
           ++  +++C   + A ++F  + T      DH+ +T++++    N  GLLDEAVEYFNKMR
Sbjct: 1   MITAFAQCGRGLEALKLFESLLTEDSFVPDHICFTAVLTAC--NHAGLLDEAVEYFNKMR 60

Query: 163 REYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLGACKVHAEVELG 222
           REYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLGACKVHAEVELG
Sbjct: 61  REYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLGACKVHAEVELG 120

Query: 223 REVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKK 282
           REVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKK
Sbjct: 121 REVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKK 180

Query: 283 THVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEYDVEC 322
           THVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEYDVEC
Sbjct: 181 THVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEYDVEC 222

[Close]

BLAST of CsGy1G012990 vs. NCBI nr
Match: XP_022948515.1 (pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita moschata])

HSP 1 Score: 364.4 bits (934), Expect = 4.0e-97
Identity = 222/505 (43.96%), Postives = 245/505 (48.51%), Query Frame = 0


Query: 53  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 112
           MCSLGA LTKYSLCSAL+SCAKT NLFLGLQIHAQIVKIGFE+NL+LNS LV+LYSKCNA
Sbjct: 1   MCSLGAKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIGFEDNLYLNSGLVNLYSKCNA 60

Query: 113 IVNAKRVFSQMKTHDHVSWTSIISGLSQNG------------------------------ 172
           IV+AKR+F  MKTHD VSWTSIISGLSQNG                              
Sbjct: 61  IVDAKRIFVHMKTHDQVSWTSIISGLSQNGAGREAILMFKNMLVTQDRPNCFTYATVISS 120

Query: 173 ------------------------------------------------------------ 232
                                                                       
Sbjct: 121 CPSLKDELPIHLTTLFHAHVIKLGFLFFSSFVISSAIDCYSKLGRIEEAALLFYEANVKD 180

Query: 233 ------------------------------------------------------------ 292
                                                                       
Sbjct: 181 NVIFNSMISGFSQNLYGEEALKLFVEMRASNLSPTDHTLTSVLNACGSLTVLEQGRQVHS 240

Query: 293 ------------------------------------------------------------ 318
                                                                       
Sbjct: 241 LVTKMGSENNVFVVCSLLDMYSKCGSVDDAFIIFNQTVEKNSVXXXXXXXXXXXXXXXXX 300

[Close]

BLAST of CsGy1G012990 vs. NCBI nr
Match: XP_022998877.1 (pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita maxima])

HSP 1 Score: 364.0 bits (933), Expect = 5.2e-97
Identity = 222/505 (43.96%), Postives = 246/505 (48.71%), Query Frame = 0


Query: 53  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 112
           MCSLGA LTKYSLCSAL+SCAKT NLFLGLQIHAQIVKIGFE+NL+LNS LV+LYSKCNA
Sbjct: 1   MCSLGAKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIGFEDNLYLNSGLVNLYSKCNA 60

Query: 113 IVNAKRVFSQMKTHDHVSWTSIISGLSQNG------------------------------ 172
           IV+AKR+F  MKTHD VSWTSIISGLSQNG                              
Sbjct: 61  IVDAKRIFVHMKTHDQVSWTSIISGLSQNGAGREAILMFKNMLVTQDRPNCFTYATVISS 120

Query: 173 ------------------------------------------------------------ 232
                                                                       
Sbjct: 121 CPSLKDELPNHLTTLFHAHVIKLGFIFFSSFVISSAIDCYSKLGRIEEAALLFYEANVKD 180

Query: 233 ------------------------------------------------------------ 292
                                                                       
Sbjct: 181 NVIFNSMISGFSQNLYGEEALKLFVEMRASNLSSTDHTLTSVLNACGSLTVLEQGRQVHS 240

Query: 293 ------------------------------------------------------------ 318
                                                                       
Sbjct: 241 LVTKMGSENNVFVVCSLLDMYSKCGSVDDAFIIFNQTVEKNSVXXXXXXXXXXXXXXXXX 300

[Close]

BLAST of CsGy1G012990 vs. TAIR10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-52
Identity = 110/299 (36.79%), Postives = 167/299 (55.85%), Query Frame = 0


Query: 57  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNA 116
           G  L + S  SALS+CA    L LG Q+H ++VK G+E   F+ ++L+ +Y KC +I  A
Sbjct: 404 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 463

Query: 117 KRVFSQMKTHDHVSWTSIISGLSQNG---------------------------------C 176
             +F +M   D VSW ++I+G S++G                                  
Sbjct: 464 NDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHT 523

Query: 177 GLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCS 236
           GL+D+  +YF  M ++Y + P   HYAC++DL  R G +E A  +M+ MP+E +  +  +
Sbjct: 524 GLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGT 583

Query: 237 LLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRV 296
           LLGA +VH   EL    A ++  M+P N+  Y+ L+++ A +G W  VG++R  M+ K V
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643

Query: 297 RKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSK--ALEYDVE 321
           +K  G+SWIEI  KTH FSVGD  HP+  EI++ L++L+L MK A   SK   + +DVE
Sbjct: 644 KKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVE 702

[Close]

BLAST of CsGy1G012990 vs. TAIR10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 202.6 bits (514), Expect = 3.7e-52
Identity = 104/292 (35.62%), Postives = 162/292 (55.48%), Query Frame = 0


Query: 61  TKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGF------EENLFLNSSLVDLYSKCNAIV 120
           T YS  + L +CA    L LG+Q H  ++K GF      E+++F+ +SL+D+Y KC  + 
Sbjct: 385 THYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVE 444

Query: 121 NAKRVFSQMKTHDHVSWTSIISGLSQNG-------------------------------- 180
               VF +M   D VSW ++I G +QNG                                
Sbjct: 445 EGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACG 504

Query: 181 -CGLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVL 240
             G ++E   YF+ M R++ + P  DHY C++DL  R G +E+AK M+E+MP + + V+ 
Sbjct: 505 HAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIW 564

Query: 241 CSLLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQK 300
            SLL ACKVH  + LG+ VA +L+E++PSN+ PY+ L+++ A+ G W  V  +RK M+++
Sbjct: 565 GSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKE 624

Query: 301 RVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSK 314
            V K  G SWI+I    HVF V D +HP+  +I+S LD L  +M+  +  ++
Sbjct: 625 GVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQDHTE 676

[Close]

BLAST of CsGy1G012990 vs. TAIR10
Match: AT3G02330.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 198.4 bits (503), Expect = 6.9e-51
Identity = 97/303 (32.01%), Postives = 174/303 (57.43%), Query Frame = 0


Query: 52  RMCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCN 111
           RM  +G    K++  + L +CA   +  LG QIHAQ++K   + ++++ S+LVD+YSKC 
Sbjct: 593 RMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCG 652

Query: 112 AIVNAKRVFSQMKTHDHVSWTSIISGLSQNG----------------------------- 171
            + +++ +F +    D V+W ++I G + +G                             
Sbjct: 653 DLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILR 712

Query: 172 ----CGLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNY 231
                GL+D+ +EYF  M+R+Y LDPQ+ HY+ ++D+  ++G V++A +++ +MP+E++ 
Sbjct: 713 ACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADD 772

Query: 232 VVLCSLLGACKVHA-EVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKE 291
           V+  +LLG C +H   VE+  E    L+ +DP +++ Y  L+++ A AG+W +V ++R+ 
Sbjct: 773 VIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRN 832

Query: 292 MQQKRVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEY 321
           M+  +++K  G SW+E+  + HVF VGD AHP+  EIY +L  +  +MK  + SS     
Sbjct: 833 MRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFDDSSFVRGV 892

[Close]

BLAST of CsGy1G012990 vs. TAIR10
Match: AT3G49170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-50
Identity = 101/302 (33.44%), Postives = 173/302 (57.28%), Query Frame = 0


Query: 38  NFEFDVAPKPMKKNRMCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENL 97
           N  F+ A K + +     LG  ++ ++  S LS  A   ++  G QIH+Q+VK+G   N 
Sbjct: 452 NLNFEQAFKLLSEITERELG--VSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 511

Query: 98  FLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNG--------------- 157
            + ++L+ +YSKC +I  A RVF+ M+  + +SWTS+I+G +++G               
Sbjct: 512 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 571

Query: 158 ------------------CGLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEK 217
                              GL+ E   +FN M  ++ + P+++HYAC++DL  R G +  
Sbjct: 572 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 631

Query: 218 AKQMMEQMPYESNYVVLCSLLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAK 277
           A + +  MP++++ +V  + LGAC+VH+  ELG+  A +++E+DP+  A Y+ L++I A 
Sbjct: 632 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 691

Query: 278 AGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLD 307
           AG W +  E+R++M+++ + K  G SWIE+  K H F VGD AHP + +IY +LD+L  +
Sbjct: 692 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 751

[Close]

BLAST of CsGy1G012990 vs. TAIR10
Match: AT2G03880.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-49
Identity = 106/297 (35.69%), Postives = 165/297 (55.56%), Query Frame = 0


Query: 38  NFEFDVAPKPMKKNRMCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENL 97
           N   DVA +  K  RM   G I  + +L S L +C     L LG+Q H  IVK  ++++L
Sbjct: 238 NSRSDVALELFK--RMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDL 297

Query: 98  FLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNG--------------- 157
            LN++LVD+Y KC ++ +A RVF+QMK  D ++W+++ISGL+QNG               
Sbjct: 298 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 357

Query: 158 ------------------CGLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEK 217
                              GLL++   YF  M++ Y +DP  +HY C+IDL  + G ++ 
Sbjct: 358 GTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDD 417

Query: 218 AKQMMEQMPYESNYVVLCSLLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAK 277
           A +++ +M  E + V   +LLGAC+V   + L    A ++I +DP +A  Y  L++I A 
Sbjct: 418 AVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYAN 477

Query: 278 AGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQL 302
           +  W  V EIR  M+ + ++K  G SWIE++K+ H F +GD +HP+  E+  KL+QL
Sbjct: 478 SQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQL 530

[Close]

BLAST of CsGy1G012990 vs. Swiss-Prot
Match: sp|Q9SY02|PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.0e-51
Identity = 110/299 (36.79%), Postives = 167/299 (55.85%), Query Frame = 0


Query: 57  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNA 116
           G  L + S  SALS+CA    L LG Q+H ++VK G+E   F+ ++L+ +Y KC +I  A
Sbjct: 404 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 463

Query: 117 KRVFSQMKTHDHVSWTSIISGLSQNG---------------------------------C 176
             +F +M   D VSW ++I+G S++G                                  
Sbjct: 464 NDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHT 523

Query: 177 GLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCS 236
           GL+D+  +YF  M ++Y + P   HYAC++DL  R G +E A  +M+ MP+E +  +  +
Sbjct: 524 GLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGT 583

Query: 237 LLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRV 296
           LLGA +VH   EL    A ++  M+P N+  Y+ L+++ A +G W  VG++R  M+ K V
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643

Query: 297 RKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSK--ALEYDVE 321
           +K  G+SWIEI  KTH FSVGD  HP+  EI++ L++L+L MK A   SK   + +DVE
Sbjct: 644 KKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVE 702

[Close]

BLAST of CsGy1G012990 vs. Swiss-Prot
Match: sp|Q9SIT7|PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 6.6e-51
Identity = 104/292 (35.62%), Postives = 162/292 (55.48%), Query Frame = 0


Query: 61  TKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGF------EENLFLNSSLVDLYSKCNAIV 120
           T YS  + L +CA    L LG+Q H  ++K GF      E+++F+ +SL+D+Y KC  + 
Sbjct: 385 THYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVE 444

Query: 121 NAKRVFSQMKTHDHVSWTSIISGLSQNG-------------------------------- 180
               VF +M   D VSW ++I G +QNG                                
Sbjct: 445 EGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACG 504

Query: 181 -CGLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVL 240
             G ++E   YF+ M R++ + P  DHY C++DL  R G +E+AK M+E+MP + + V+ 
Sbjct: 505 HAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIW 564

Query: 241 CSLLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQK 300
            SLL ACKVH  + LG+ VA +L+E++PSN+ PY+ L+++ A+ G W  V  +RK M+++
Sbjct: 565 GSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKE 624

Query: 301 RVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSK 314
            V K  G SWI+I    HVF V D +HP+  +I+S LD L  +M+  +  ++
Sbjct: 625 GVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQDHTE 676

[Close]

BLAST of CsGy1G012990 vs. Swiss-Prot
Match: sp|Q9FWA6|PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-49
Identity = 97/303 (32.01%), Postives = 174/303 (57.43%), Query Frame = 0


Query: 52  RMCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCN 111
           RM  +G    K++  + L +CA   +  LG QIHAQ++K   + ++++ S+LVD+YSKC 
Sbjct: 593 RMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCG 652

Query: 112 AIVNAKRVFSQMKTHDHVSWTSIISGLSQNG----------------------------- 171
            + +++ +F +    D V+W ++I G + +G                             
Sbjct: 653 DLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILR 712

Query: 172 ----CGLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNY 231
                GL+D+ +EYF  M+R+Y LDPQ+ HY+ ++D+  ++G V++A +++ +MP+E++ 
Sbjct: 713 ACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADD 772

Query: 232 VVLCSLLGACKVHA-EVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKE 291
           V+  +LLG C +H   VE+  E    L+ +DP +++ Y  L+++ A AG+W +V ++R+ 
Sbjct: 773 VIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRN 832

Query: 292 MQQKRVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEY 321
           M+  +++K  G SW+E+  + HVF VGD AHP+  EIY +L  +  +MK  + SS     
Sbjct: 833 MRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFDDSSFVRGV 892

[Close]

BLAST of CsGy1G012990 vs. Swiss-Prot
Match: sp|Q5G1T1|PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.7e-49
Identity = 101/302 (33.44%), Postives = 173/302 (57.28%), Query Frame = 0


Query: 38  NFEFDVAPKPMKKNRMCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENL 97
           N  F+ A K + +     LG  ++ ++  S LS  A   ++  G QIH+Q+VK+G   N 
Sbjct: 452 NLNFEQAFKLLSEITERELG--VSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 511

Query: 98  FLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNG--------------- 157
            + ++L+ +YSKC +I  A RVF+ M+  + +SWTS+I+G +++G               
Sbjct: 512 PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEE 571

Query: 158 ------------------CGLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEK 217
                              GL+ E   +FN M  ++ + P+++HYAC++DL  R G +  
Sbjct: 572 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 631

Query: 218 AKQMMEQMPYESNYVVLCSLLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAK 277
           A + +  MP++++ +V  + LGAC+VH+  ELG+  A +++E+DP+  A Y+ L++I A 
Sbjct: 632 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 691

Query: 278 AGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLD 307
           AG W +  E+R++M+++ + K  G SWIE+  K H F VGD AHP + +IY +LD+L  +
Sbjct: 692 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 751

[Close]

BLAST of CsGy1G012990 vs. Swiss-Prot
Match: sp|Q9SI53|PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.3e-48
Identity = 106/297 (35.69%), Postives = 165/297 (55.56%), Query Frame = 0


Query: 38  NFEFDVAPKPMKKNRMCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENL 97
           N   DVA +  K  RM   G I  + +L S L +C     L LG+Q H  IVK  ++++L
Sbjct: 238 NSRSDVALELFK--RMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDL 297

Query: 98  FLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNG--------------- 157
            LN++LVD+Y KC ++ +A RVF+QMK  D ++W+++ISGL+QNG               
Sbjct: 298 ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSS 357

Query: 158 ------------------CGLLDEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEK 217
                              GLL++   YF  M++ Y +DP  +HY C+IDL  + G ++ 
Sbjct: 358 GTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDD 417

Query: 218 AKQMMEQMPYESNYVVLCSLLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAK 277
           A +++ +M  E + V   +LLGAC+V   + L    A ++I +DP +A  Y  L++I A 
Sbjct: 418 AVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYAN 477

Query: 278 AGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQL 302
           +  W  V EIR  M+ + ++K  G SWIE++K+ H F +GD +HP+  E+  KL+QL
Sbjct: 478 SQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQL 530

[Close]

BLAST of CsGy1G012990 vs. TrEMBL
Match: tr|A0A1S3CML0|A0A1S3CML0_CUCME (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=3656 GN=LOC103502628 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 3.7e-115
Identity = 256/508 (50.39%), Postives = 260/508 (51.18%), Query Frame = 0


Query: 53  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 112
           MCSLGA LT YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA
Sbjct: 1   MCSLGAKLTTYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60

Query: 113 IVNAKRVFSQMKTHDHVSWTSIISGLSQNGC----------------------------- 172
           IVNAKRVFS+MKTHD VSWTSIISGLSQNGC                             
Sbjct: 61  IVNAKRVFSRMKTHDQVSWTSIISGLSQNGCGSEAILMFKKMLVTQVRPNCFTYATVISS 120

Query: 173 ------------------------------------------------------------ 232
                                                                       
Sbjct: 121 CPTLKNELQIHLATLLHAHVIKFGFTFSSFVISSTIDCYSKLGRIQEASLLFSETSVKDN 180

Query: 233 ------------------------------------------------------------ 292
                                                                       
Sbjct: 181 IIFNSMISGYSQNLCGEEALKLFVEMRASNLSPTDHTLTSVLNACGCLTVLEQGRQVHSL 240

Query: 293 ------------------------------------------------------------ 322
                                                                       
Sbjct: 241 LTKMGSENNVFVVCSLLDMYSKCGSIDEAFSLFNQTVQKNSVLSTSMIMAFAQCGRGLEA 300

[Close]

BLAST of CsGy1G012990 vs. TrEMBL
Match: tr|A0A0A0LSJ5|A0A0A0LSJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G089470 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 2.7e-102
Identity = 186/224 (83.04%), Postives = 201/224 (89.73%), Query Frame = 0


Query: 103 LVDLYSKCNAIVNAKRVFSQMKTH-----DHVSWTSIISGLSQNGCGLLDEAVEYFNKMR 162
           ++  +++C   + A ++F  + T      DH+ +T++++    N  GLLDEAVEYFNKMR
Sbjct: 1   MITAFAQCGRGLEALKLFESLLTEDSFVPDHICFTAVLTAC--NHAGLLDEAVEYFNKMR 60

Query: 163 REYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLGACKVHAEVELG 222
           REYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLGACKVHAEVELG
Sbjct: 61  REYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLGACKVHAEVELG 120

Query: 223 REVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKK 282
           REVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKK
Sbjct: 121 REVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKK 180

Query: 283 THVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEYDVEC 322
           THVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEYDVEC
Sbjct: 181 THVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEYDVEC 222

[Close]

BLAST of CsGy1G012990 vs. TrEMBL
Match: tr|A0A1S3E6F9|A0A1S3E6F9_CICAR (pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like OS=Cicer arietinum OX=3827 GN=LOC101494933 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.4e-66
Identity = 127/275 (46.18%), Postives = 175/275 (63.64%), Query Frame = 0


Query: 61  TKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVF 120
           T ++LCS LS+C+    L  G Q+H+ ++KIG E N+F+ S+L+D+YSK   I  A+ V 
Sbjct: 244 TDHTLCSILSACSSLAVLLQGKQVHSLVIKIGSERNVFVASALIDMYSKGGDIDAARCVL 303

Query: 121 SQMKTHDHVSWTSIISGLSQ----------------------------------NGCGLL 180
            Q    + V WTS+I G +Q                                  N  G +
Sbjct: 304 DQTSNRNTVLWTSMIMGYAQCGRGLEAVELFDCLLTKQELIPDQVCFTAVLTACNHAGFI 363

Query: 181 DEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLG 240
           D+  EYFNKMR  Y L P ID YACLIDLYARNGN+ KA+ +ME+MPY+ N ++  S+L 
Sbjct: 364 DKGEEYFNKMRTSYGLSPDIDQYACLIDLYARNGNLRKARDLMEEMPYDPNCIIWSSVLS 423

Query: 241 ACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKS 300
           ACK++ +VELGRE A++LI+M+P NAAPYLTLAHI A+ GLW +  E+R  MQQ+  RK 
Sbjct: 424 ACKIYGDVELGREAANQLIKMEPCNAAPYLTLAHIYARKGLWNEASEVRALMQQRIKRKP 483

Query: 301 AGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQL 302
           AGWSW+E+DK+ HVF+V D  H +S EIY++L+++
Sbjct: 484 AGWSWVEVDKQFHVFAVDDVTHEQSNEIYAELERI 518

[Close]

BLAST of CsGy1G012990 vs. TrEMBL
Match: tr|I1KI78|I1KI78_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102664997 PE=4 SV=2)

HSP 1 Score: 260.4 bits (664), Expect = 5.4e-66
Identity = 126/275 (45.82%), Postives = 176/275 (64.00%), Query Frame = 0


Query: 61  TKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVF 120
           T ++LC+ L++C+    L  G Q+H+ ++K+G E N+F+ S+L+D+YSK   I  A+ V 
Sbjct: 256 TDHTLCTILNACSSLAVLLQGRQMHSLVIKMGSERNVFVASALIDMYSKGGNIDEAQCVL 315

Query: 121 SQMKTHDHVSWTSIISGLSQ----------------------------------NGCGLL 180
            Q    ++V WTS+I G +                                   N  G L
Sbjct: 316 DQTSKKNNVLWTSMIMGYAHCGRGSEALELFDCLLTKQEVIPDHICFTAVLTACNHAGFL 375

Query: 181 DEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLG 240
           D+ VEYFNKM   Y L P ID YACLIDLYARNGN+ KA+ +ME+MPY  NYV+  S L 
Sbjct: 376 DKGVEYFNKMTTYYGLSPDIDQYACLIDLYARNGNLSKARNLMEEMPYVPNYVIWSSFLS 435

Query: 241 ACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKS 300
           +CK++ +V+LGRE A +LI+M+P NAAPYLTLAHI AK GLW +V E+R+ +Q+KR+RK 
Sbjct: 436 SCKIYGDVKLGREAADQLIKMEPCNAAPYLTLAHIYAKDGLWNEVAEVRRLIQRKRIRKP 495

Query: 301 AGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQL 302
           AGWSW+E+DKK H+F+V D  H +S EIY+ L+++
Sbjct: 496 AGWSWVEVDKKFHIFAVDDVTHQRSNEIYAGLEKI 530

[Close]

BLAST of CsGy1G012990 vs. TrEMBL
Match: tr|A0A0B2R406|A0A0B2R406_GLYSO (Pentatricopeptide repeat-containing protein OS=Glycine soja OX=3848 GN=glysoja_031026 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.4e-66
Identity = 126/275 (45.82%), Postives = 176/275 (64.00%), Query Frame = 0


Query: 61  TKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVF 120
           T ++LC+ L++C+    L  G Q+H+ ++K+G E N+F+ S+L+D+YSK   I  A+ V 
Sbjct: 212 TDHTLCTILNACSSLAVLLQGRQMHSLVIKMGSERNVFVASALIDMYSKGGNIDEAQCVL 271

Query: 121 SQMKTHDHVSWTSIISGLSQ----------------------------------NGCGLL 180
            Q    ++V WTS+I G +                                   N  G L
Sbjct: 272 DQTSKKNNVLWTSMIMGYAHCGRGSEALELFDCLLTKQEVIPDHICFTAVLTACNHAGFL 331

Query: 181 DEAVEYFNKMRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLG 240
           D+ VEYFNKM   Y L P ID YACLIDLYARNGN+ KA+ +ME+MPY  NYV+  S L 
Sbjct: 332 DKGVEYFNKMTTYYGLSPDIDQYACLIDLYARNGNLSKARNLMEEMPYVPNYVIWSSFLS 391

Query: 241 ACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKS 300
           +CK++ +V+LGRE A +LI+M+P NAAPYLTLAHI AK GLW +V E+R+ +Q+KR+RK 
Sbjct: 392 SCKIYGDVKLGREAADQLIKMEPCNAAPYLTLAHIYAKDGLWNEVAEVRRLIQRKRIRKP 451

Query: 301 AGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQL 302
           AGWSW+E+DKK H+F+V D  H +S EIY+ L+++
Sbjct: 452 AGWSWVEVDKKFHIFAVDDVTHQRSNEIYAGLEKI 486

The following BLAST results are available for this feature:

BLAST of CsGy1G012990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653616.1	1.1e-123	52.95	PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis s...	[more]
XP_008464861.1	5.6e-115	50.39	PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis m...	[more]
KGN64758.1	4.1e-102	83.04	hypothetical protein Csa_1G089470 [Cucumis sativus]	[more]
XP_022948515.1	4.0e-97	43.96	pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita moschata]	[more]
XP_022998877.1	5.2e-97	43.96	pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita maxima]	[more]

BLAST of CsGy1G012990 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02750.1	1.6e-52	36.79	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G13600.1	3.7e-52	35.62	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G02330.1	6.9e-51	32.01	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G49170.1	2.6e-50	33.44	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G03880.1	1.3e-49	35.69	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CsGy1G012990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SY02\|PP301_ARATH	3.0e-51	36.79	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SIT7\|PP151_ARATH	6.6e-51	35.62	Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FWA6\|PP207_ARATH	1.2e-49	32.01	Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidop...	[more]
sp\|Q5G1T1\|PP272_ARATH	4.7e-49	33.44	Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop...	[more]
sp\|Q9SI53\|PP147_ARATH	2.3e-48	35.69	Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidop...	[more]

BLAST of CsGy1G012990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CML0\|A0A1S3CML0_CUCME	3.7e-115	50.39	pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0LSJ5\|A0A0A0LSJ5_CUCSA	2.7e-102	83.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G089470 PE=4 SV=1	[more]
tr\|A0A1S3E6F9\|A0A1S3E6F9_CICAR	5.4e-66	46.18	pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like OS=Cic...	[more]
tr\|I1KI78\|I1KI78_SOYBN	5.4e-66	45.82	Uncharacterized protein OS=Glycine max OX=3847 GN=102664997 PE=4 SV=2	[more]
tr\|A0A0B2R406\|A0A0B2R406_GLYSO	5.4e-66	45.82	Pentatricopeptide repeat-containing protein OS=Glycine soja OX=3848 GN=glysoja_0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080156	mitochondrial mRNA modification
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012990.1	CsGy1G012990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 298..318
None	No IPR available	PANTHER	PTHR24015:SF334	SUBFAMILY NOT NAMED	coord: 143..290
None	No IPR available	PANTHER	PTHR24015:SF334	SUBFAMILY NOT NAMED	coord: 41..142
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 143..290
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 41..142
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 48..142 e-value: 4.3E-12 score: 47.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 137..254
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 101..126 e-value: 0.77 score: 10.0 coord: 169..193 e-value: 1.5E-4 score: 21.7 coord: 129..159 e-value: 3.3E-4 score: 20.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 169..192 e-value: 1.3E-5 score: 23.1 coord: 129..159 e-value: 0.0024 score: 15.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 231..265 score: 6.73
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 165..195 score: 8.111
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 61..95 score: 5.481
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 96..126 score: 6.599
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 127..159 score: 9.251

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G012990	Cla005056	Watermelon (97103) v1	cgybwmB012
CsGy1G012990	Csa1G089470	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G012990	ClCG03G002400	Watermelon (Charleston Gray)	cgybwcgB035
CsGy1G012990	CSPI01G12930	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G012990	CmaCh01G005310	Cucurbita maxima (Rimu)	cgybcmaB110
CsGy1G012990	CmoCh01G005610	Cucurbita moschata (Rifu)	cgybcmoB104
CsGy1G012990	Lsi02G014450	Bottle gourd (USVL1VR-Ls)	cgyblsiB020
CsGy1G012990	MELO3C035436.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G012990	CsaV3_1G013080	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G012990	Cla97C03G053430	Watermelon (97103) v2	cgybwmbB034
CsGy1G012990	Bhi08G000250	Wax gourd	cgybwgoB046
CsGy1G012990	Carg12305	Silver-seed gourd	carcgybB0449

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G012990	Wild cucumber (PI 183967)	cgybcpiB043
CsGy1G012990	Cucumber (Chinese Long) v3	cgybcucB050
CsGy1G012990	Watermelon (97103) v2	cgybwmbB030
CsGy1G012990	Wax gourd	cgybwgoB017
CsGy1G012990	Cucumber (Gy14) v2	cgybcgybB040
CsGy1G012990	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G012990	Cucurbita maxima (Rimu)	cgybcmaB124
CsGy1G012990	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G012990	Cucurbita moschata (Rifu)	cgybcmoB114
CsGy1G012990	Cucurbita pepo (Zucchini)	cgybcpeB036
CsGy1G012990	Cucurbita pepo (Zucchini)	cgybcpeB090
CsGy1G012990	Cucumber (Chinese Long) v2	cgybcuB046
CsGy1G012990	Bottle gourd (USVL1VR-Ls)	cgyblsiB003
CsGy1G012990	Melon (DHL92) v3.5.1	cgybmeB009
CsGy1G012990	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G012990	Melon (DHL92) v3.6.1	cgybmedB008
CsGy1G012990	Watermelon (Charleston Gray)	cgybwcgB032
CsGy1G012990	Watermelon (97103) v1	cgybwmB072