CsGy1G012690 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012690
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Histone H4
Location	Chr1 : 8113651 .. 8114205 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAGGGTTGTCGAAACCTAAGGTTTGGATTTGGGGGTTTTGTGGTTCGGTGATTTGGATGTGATTTTGGAGAGGAATTGTATATTATTGGTGATTTTGTTAGATTCAAACTATGATATCAGTCTGTAGGTTGTTAATTGTTTCTCTCGTAATTGGAAATCTTGATGCGCGTAATTAGAAACTGTTCTAGTTTTGTTCATCTTCAAGTTCACTATGTTTCTCTTCTGATTATTGGATCTGATTCTTAA

mRNA sequence

ATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGTTCACTATGTTTCTCTTCTGATTATTGGATCTGATTCTTAA

Coding sequence (CDS)

ATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGTTCACTATGTTTCTCTTCTGATTATTGGATCTGATTCTTAA

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHYVSLLIIGSDS

Homology

[Close]

BLAST of CsGy1G012690 vs. NCBI nr
Match: PPD92129.1 (hypothetical protein GOBAR_DD10956 [Gossypium barbadense])

HSP 1 Score: 203.0 bits (515), Expect = 5.5e-49
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHYVSL 109
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG H+V L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGHFVHL 108

[Close]

BLAST of CsGy1G012690 vs. NCBI nr
Match: EXB54746.1 (Histone H4 [Morus notabilis])

HSP 1 Score: 201.1 bits (510), Expect = 2.1e-48
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHY 106
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV Y
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVDY 105

[Close]

BLAST of CsGy1G012690 vs. NCBI nr
Match: XP_016448403.1 (PREDICTED: uncharacterized protein LOC107773508 [Nicotiana tabacum])

HSP 1 Score: 200.7 bits (509), Expect = 2.7e-48
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHYVSLLIIG 113
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG  Y  LL+IG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG-GYGYLLVIG 111

[Close]

BLAST of CsGy1G012690 vs. NCBI nr
Match: PHT46786.1 (Histone H4 [Capsicum baccatum])

HSP 1 Score: 200.3 bits (508), Expect = 3.6e-48
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHYVSLLI 111
           IFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFG  Y+ L I
Sbjct: 61  IFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGDYIILYI 110

[Close]

BLAST of CsGy1G012690 vs. NCBI nr
Match: OMO91300.1 (Histone H4 [Corchorus olitorius])

HSP 1 Score: 199.9 bits (507), Expect = 4.7e-48
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHYVSLLIIGSDS 116
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV    + +   D+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAVAGMGVPSDDA 115

[Close]

BLAST of CsGy1G012690 vs. TAIR10
Match: AT1G07660.1 (Histone superfamily protein)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. TAIR10
Match: AT1G07820.1 (Histone superfamily protein)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. TAIR10
Match: AT2G28740.1 (histone H4)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. TAIR10
Match: AT3G45930.1 (Histone superfamily protein)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. TAIR10
Match: AT3G53730.1 (Histone superfamily protein)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. Swiss-Prot
Match: sp|P62785|H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 9.9e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. Swiss-Prot
Match: sp|P59259|H4_ARATH (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 9.9e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. Swiss-Prot
Match: sp|Q6PMI5|H4_CHEMJ (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 197.2 bits (500), Expect = 9.9e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. Swiss-Prot
Match: sp|Q6WZ83|H4_EUCGL (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 197.2 bits (500), Expect = 9.9e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. Swiss-Prot
Match: sp|Q6LAF3|H4_FLATR (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 197.2 bits (500), Expect = 9.9e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of CsGy1G012690 vs. TrEMBL
Match: tr|A0A2P5RZC8|A0A2P5RZC8_GOSBA (Histone H4 OS=Gossypium barbadense OX=3634 GN=GOBAR_DD10956 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.7e-49
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHYVSL 109
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG H+V L
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGHFVHL 108

[Close]

BLAST of CsGy1G012690 vs. TrEMBL
Match: tr|A0A0D3DSU9|A0A0D3DSU9_BRAOL (Histone H4 OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-48
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHYVSLLII 112
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV   + LI+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVENPNFLIL 111

[Close]

BLAST of CsGy1G012690 vs. TrEMBL
Match: tr|W9QUR0|W9QUR0_9ROSA (Histone H4 OS=Morus notabilis OX=981085 GN=L484_012846 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-48
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHY 106
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV Y
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVDY 105

[Close]

BLAST of CsGy1G012690 vs. TrEMBL
Match: tr|A0A1S3Y8K5|A0A1S3Y8K5_TOBAC (Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107773508 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.8e-48
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHYVSLLIIG 113
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG  Y  LL+IG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG-GYGYLLVIG 111

[Close]

BLAST of CsGy1G012690 vs. TrEMBL
Match: tr|A0A2G2WNG6|A0A2G2WNG6_CAPBA (Histone H4 OS=Capsicum baccatum OX=33114 GN=CQW23_15944 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.4e-48
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVHYVSLLI 111
           IFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFG  Y+ L I
Sbjct: 61  IFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGDYIILYI 110

The following BLAST results are available for this feature:

BLAST of CsGy1G012690 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD92129.1	5.5e-49	97.22	hypothetical protein GOBAR_DD10956 [Gossypium barbadense]	[more]
EXB54746.1	2.1e-48	99.05	Histone H4 [Morus notabilis]	[more]
XP_016448403.1	2.7e-48	95.54	PREDICTED: uncharacterized protein LOC107773508 [Nicotiana tabacum]	[more]
PHT46786.1	3.6e-48	94.55	Histone H4 [Capsicum baccatum]	[more]
OMO91300.1	4.7e-48	90.43	Histone H4 [Corchorus olitorius]	[more]

BLAST of CsGy1G012690 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07660.1	5.5e-51	100.00	Histone superfamily protein	[more]
AT1G07820.1	5.5e-51	100.00	Histone superfamily protein	[more]
AT2G28740.1	5.5e-51	100.00	histone H4	[more]
AT3G45930.1	5.5e-51	100.00	Histone superfamily protein	[more]
AT3G53730.1	5.5e-51	100.00	Histone superfamily protein	[more]

BLAST of CsGy1G012690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P62785\|H41_WHEAT	9.9e-50	100.00	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
sp\|P59259\|H4_ARATH	9.9e-50	100.00	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]
sp\|Q6PMI5\|H4_CHEMJ	9.9e-50	100.00	Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3	[more]
sp\|Q6WZ83\|H4_EUCGL	9.9e-50	100.00	Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3	[more]
sp\|Q6LAF3\|H4_FLATR	9.9e-50	100.00	Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3	[more]

BLAST of CsGy1G012690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5RZC8\|A0A2P5RZC8_GOSBA	3.7e-49	97.22	Histone H4 OS=Gossypium barbadense OX=3634 GN=GOBAR_DD10956 PE=3 SV=1	[more]
tr\|A0A0D3DSU9\|A0A0D3DSU9_BRAOL	1.1e-48	94.59	Histone H4 OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1	[more]
tr\|W9QUR0\|W9QUR0_9ROSA	1.4e-48	99.05	Histone H4 OS=Morus notabilis OX=981085 GN=L484_012846 PE=3 SV=1	[more]
tr\|A0A1S3Y8K5\|A0A1S3Y8K5_TOBAC	1.8e-48	95.54	Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107773508 PE=3 SV=1	[more]
tr\|A0A2G2WNG6\|A0A2G2WNG6_CAPBA	2.4e-48	94.55	Histone H4 OS=Capsicum baccatum OX=33114 GN=CQW23_15944 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR019809	Histone_H4_CS
IPR009072	Histone-fold
IPR035425	CENP-T/H4_C
IPR001951	Histone_H4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012690.1	CsGy1G012690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 5..16 score: 95.59 coord: 77..89 score: 90.05 coord: 62..76 score: 95.1 coord: 89..100 score: 97.79 coord: 20..39 score: 93.38 coord: 40..60 score: 93.56
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 e-value: 2.0E-29 score: 113.7
IPR001951	Histone H4	CDD	cd00076	H4	coord: 18..101 e-value: 3.76256E-43 score: 137.247
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 36..97 e-value: 1.6E-8 score: 34.5
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 2..103 e-value: 6.0E-60 score: 201.7
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 3..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..102
None	No IPR available	PANTHER	PTHR10484:SF160	SUBFAMILY NOT NAMED	coord: 1..102
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G012690	Cla005035	Watermelon (97103) v1	cgybwmB012
CsGy1G012690	Csa1G084320	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G012690	MELO3C005059	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G012690	ClCG03G002190	Watermelon (Charleston Gray)	cgybwcgB035
CsGy1G012690	CSPI01G12670	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G012690	CmaCh13G001760	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G012690	CmaCh01G005460	Cucurbita maxima (Rimu)	cgybcmaB110
CsGy1G012690	CmoCh13G001800	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G012690	Lsi02G014210	Bottle gourd (USVL1VR-Ls)	cgyblsiB020
CsGy1G012690	Cp4.1LG02g12980	Cucurbita pepo (Zucchini)	cgybcpeB090
CsGy1G012690	MELO3C005059.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G012690	CsaV3_1G012840	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G012690	Cla97C03G053190	Watermelon (97103) v2	cgybwmbB034
CsGy1G012690	Bhi08G000257	Wax gourd	cgybwgoB034
CsGy1G012690	Carg12320	Silver-seed gourd	carcgybB0449

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G012690	Wild cucumber (PI 183967)	cgybcpiB043
CsGy1G012690	Silver-seed gourd	carcgybB0723
CsGy1G012690	Cucumber (Chinese Long) v3	cgybcucB050
CsGy1G012690	Cucumber (Gy14) v2	cgybcgybB040
CsGy1G012690	Cucurbita moschata (Rifu)	cgybcmoB104
CsGy1G012690	Cucurbita pepo (Zucchini)	cgybcpeB084
CsGy1G012690	Cucumber (Chinese Long) v2	cgybcuB046
CsGy1G012690	Melon (DHL92) v3.5.1	cgybmeB009