CsaV3_1G012840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G012840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionhistone H4
Locationchr1 : 8114346 .. 8115282 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATGGCCTTAAGCCCTCAATCCGCGAGACACACCAATCCATGTGAAATCGAACGGTCACAAGAAAAAACCCTTTCCACACACGGATCGCCATCCAACGGCCATCTTTCCATCTCATCCTCTATATAGTCTACCAAACTCTGTCATCTACGACACACTTCATTTATCTCAGCACACTTTCTTCATCGAAATCTCCATCAACCAAAGCAACCAACAATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAGGGTTGTCGAAACCTAAGGTTTGGATTTGGGGGTTTTGTGGTTCGGTGATTTGGATGTGATTTTGGAGAGGAATTGTATATTATTGGTGATTTTGTTAGATTCAAACTATGATATCAGTCTGTAGGTTGTTAATTGTTTCTCTCGTAATTGGAAATCTTGATGCGCGTAATTAGAAACTGTTCTAGTTTTGTTCATCTTCAAGTTCACTATGTTTCTCTTCTGATTATTGGATCTGATTCTTAAAGCATAATTTTAGCTCTCAAGTAATTTCTAACTTCAAACTTGTTGCATCGATGTTCATAAAATCAAGATGAGATTGTTCATTAAATTTATATAATAATATCACATTAAACCTTGTACTCACTGCGAGATTGATTCAAATCATTAGGCCTTTATAAACAGCATTGAAC

mRNA sequence

ATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAG

Coding sequence (CDS)

ATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Homology
[Close]
BLAST of CsaV3_1G012840 vs. NCBI nr
Match: XP_007132135.1 (hypothetical protein PHAVU_011G069500g, partial [Phaseolus vulgaris] >ESW04129.1 hypothetical protein PHAVU_011G069500g, partial [Phaseolus vulgaris])

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 82  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 141

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 142 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 184

[Close]
BLAST of CsaV3_1G012840 vs. NCBI nr
Match: XP_007133241.1 (hypothetical protein PHAVU_011G163600g, partial [Phaseolus vulgaris] >ESW05235.1 hypothetical protein PHAVU_011G163600g, partial [Phaseolus vulgaris])

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 4   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 63

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 64  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 106

[Close]
BLAST of CsaV3_1G012840 vs. NCBI nr
Match: XP_007133245.1 (hypothetical protein PHAVU_011G164000g [Phaseolus vulgaris] >ESW05239.1 hypothetical protein PHAVU_011G164000g [Phaseolus vulgaris])

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 24  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 83

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 84  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126

[Close]
BLAST of CsaV3_1G012840 vs. NCBI nr
Match: XP_007133251.1 (hypothetical protein PHAVU_011G164600g [Phaseolus vulgaris] >ESW05245.1 hypothetical protein PHAVU_011G164600g [Phaseolus vulgaris])

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 142 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 201

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 202 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 244

[Close]
BLAST of CsaV3_1G012840 vs. NCBI nr
Match: ACG30677.1 (histone H4 [Zea mays])

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TAIR10
Match: AT1G07660.1 (Histone superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TAIR10
Match: AT1G07820.1 (Histone superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TAIR10
Match: AT2G28740.1 (histone H4)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TAIR10
Match: AT3G45930.1 (Histone superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TAIR10
Match: AT3G53730.1 (Histone superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. Swiss-Prot
Match: sp|P62785|H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. Swiss-Prot
Match: sp|P59259|H4_ARATH (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. Swiss-Prot
Match: sp|Q6PMI5|H4_CHEMJ (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. Swiss-Prot
Match: sp|Q6WZ83|H4_EUCGL (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. Swiss-Prot
Match: sp|Q6LAF3|H4_FLATR (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TrEMBL
Match: tr|A0A2T7EVL0|A0A2T7EVL0_9POAL (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G343000 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TrEMBL
Match: tr|A0A2P5EB67|A0A2P5EB67_9ROSA (Histone H4 OS=Trema orientalis OX=63057 GN=TorRG33x02_062180 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TrEMBL
Match: tr|M7ZBJ8|M7ZBJ8_TRIUA (Histone H4 OS=Triticum urartu OX=4572 GN=TRIUR3_04192 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TrEMBL
Match: tr|A0A1U8GX93|A0A1U8GX93_CAPAN (Histone H4 OS=Capsicum annuum OX=4072 GN=T459_16119 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]
BLAST of CsaV3_1G012840 vs. TrEMBL
Match: tr|A0A1S4AKB5|A0A1S4AKB5_TOBAC (Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107798555 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.1e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:
BLAST of CsaV3_1G012840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_007132135.13.2e-48100.00hypothetical protein PHAVU_011G069500g, partial [Phaseolus vulgaris] >ESW04129.1... [more]
XP_007133241.13.2e-48100.00hypothetical protein PHAVU_011G163600g, partial [Phaseolus vulgaris] >ESW05235.1... [more]
XP_007133245.13.2e-48100.00hypothetical protein PHAVU_011G164000g [Phaseolus vulgaris] >ESW05239.1 hypothet... [more]
XP_007133251.13.2e-48100.00hypothetical protein PHAVU_011G164600g [Phaseolus vulgaris] >ESW05245.1 hypothet... [more]
ACG30677.13.2e-48100.00histone H4 [Zea mays][more]
BLAST of CsaV3_1G012840 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07660.15.9e-52100.00Histone superfamily protein[more]
AT1G07820.15.9e-52100.00Histone superfamily protein[more]
AT2G28740.15.9e-52100.00histone H4[more]
AT3G45930.15.9e-52100.00Histone superfamily protein[more]
AT3G53730.15.9e-52100.00Histone superfamily protein[more]
BLAST of CsaV3_1G012840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P62785|H41_WHEAT1.1e-50100.00Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2[more]
sp|P59259|H4_ARATH1.1e-50100.00Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2[more]
sp|Q6PMI5|H4_CHEMJ1.1e-50100.00Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3[more]
sp|Q6WZ83|H4_EUCGL1.1e-50100.00Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3[more]
sp|Q6LAF3|H4_FLATR1.1e-50100.00Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3[more]
BLAST of CsaV3_1G012840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2T7EVL0|A0A2T7EVL0_9POAL2.1e-48100.00Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G34300... [more]
tr|A0A2P5EB67|A0A2P5EB67_9ROSA2.1e-48100.00Histone H4 OS=Trema orientalis OX=63057 GN=TorRG33x02_062180 PE=3 SV=1[more]
tr|M7ZBJ8|M7ZBJ8_TRIUA2.1e-48100.00Histone H4 OS=Triticum urartu OX=4572 GN=TRIUR3_04192 PE=3 SV=1[more]
tr|A0A1U8GX93|A0A1U8GX93_CAPAN2.1e-48100.00Histone H4 OS=Capsicum annuum OX=4072 GN=T459_16119 PE=3 SV=1[more]
tr|A0A1S4AKB5|A0A1S4AKB5_TOBAC2.1e-48100.00Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107798555 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR019809Histone_H4_CS
IPR009072Histone-fold
IPR035425CENP-T/H4_C
IPR001951Histone_H4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009579 thylakoid
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G012840.1CsaV3_1G012840.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001951Histone H4PRINTSPR00623HISTONEH4coord: 89..100
score: 97.79
coord: 5..16
score: 95.59
coord: 77..89
score: 90.05
coord: 20..39
score: 93.38
coord: 40..60
score: 93.56
coord: 62..76
score: 95.1
IPR001951Histone H4SMARTSM00417h44coord: 16..90
e-value: 2.0E-29
score: 113.7
IPR001951Histone H4CDDcd00076H4coord: 18..101
e-value: 1.32401E-41
score: 133.01
IPR035425CENP-T/Histone H4, histone foldPFAMPF15511CENP-T_Ccoord: 35..96
e-value: 1.4E-8
score: 34.7
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 2..103
e-value: 1.7E-60
score: 203.5
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 3..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR10484:SF160SUBFAMILY NOT NAMEDcoord: 1..103
NoneNo IPR availablePANTHERPTHR10484HISTONE H4coord: 1..103
IPR019809Histone H4, conserved sitePROSITEPS00047HISTONE_H4coord: 15..19

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G012840CSPI01G12670Wild cucumber (PI 183967)cpicucB001
CsaV3_1G012840Cucsa.226890Cucumber (Gy14) v1cgycucB343
CsaV3_1G012840CmaCh13G001760Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G012840CmaCh01G005460Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G012840CmoCh13G001800Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G012840Cp4.1LG02g12980Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G012840CsGy1G012690Cucumber (Gy14) v2cgybcucB002
CsaV3_1G012840Carg12320Silver-seed gourdcarcucB0474
CsaV3_1G012840Cla005035Watermelon (97103) v1cucwmB015
CsaV3_1G012840MELO3C005059Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G012840ClCG03G002190Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G012840Lsi02G014210Bottle gourd (USVL1VR-Ls)cuclsiB025
CsaV3_1G012840MELO3C005059.2Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G012840Cla97C03G053190Watermelon (97103) v2cucwmbB032
CsaV3_1G012840Bhi08G000257Wax gourdcucwgoB040
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G012840Cucumber (Chinese Long) v3cuccucB055
CsaV3_1G012840Silver-seed gourdcarcucB0764
CsaV3_1G012840Cucumber (Gy14) v2cgybcucB256
CsaV3_1G012840Cucurbita maxima (Rimu)cmacucB0649
CsaV3_1G012840Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G012840Cucurbita moschata (Rifu)cmocucB0634
CsaV3_1G012840Cucurbita moschata (Rifu)cmocucB0678
CsaV3_1G012840Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G012840Wild cucumber (PI 183967)cpicucB320
CsaV3_1G012840Bottle gourd (USVL1VR-Ls)cuclsiB002
CsaV3_1G012840Melon (DHL92) v3.5.1cucmeB009
CsaV3_1G012840Melon (DHL92) v3.6.1cucmedB008
CsaV3_1G012840Watermelon (Charleston Gray)cucwcgB035
CsaV3_1G012840Watermelon (97103) v1cucwmB080