CSPI01G12670 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G12670
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	histone H4
Location	Chr1 : 8104634 .. 8105402 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATATAGTCTACCAAACTCTGTCATCTACGACACACTTCATTTATCTCAGCACACTTTCTTCATCGAAATCTCCATCAACCAAAGCAACCAACAATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAGGGTTGTCGAAACCTAAGGTTTGGATTTGGGGGTTTTGTGGTTCGGTGATTTGGATGTGATTTTGGAGAGGAATTGTATATTATTGGTGATTTTGTTAGATTCAAACTATGATATCAGTCTGTAGGTTGTTAATTGTTTCTCTCGTAATTGGAAATCTTGATGCGCGTAATTAGAAACTGTTCTAGTTTTGTTCATCTTCAAGTTCACTATGTTTCTCTTCTGATTATTGGATCTGATTCTTAAAGCATAATTTTAGCTCTCAAGTAATTTCTAACTTCAAACTTGTTGCATCGATGTTCATAAAATCAAGATGAGATTGTTCATTAAATTTATATAATAATATCACATTAAACCTTGTACTC

mRNA sequence

ATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAG

Coding sequence (CDS)

ATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAG

Homology

[Close]

BLAST of CSPI01G12670 vs. Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TrEMBL
Match: A2WWR4_ORYSI (Histone H4 OS=Oryza sativa subsp. indica GN=OsI_04340 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TrEMBL
Match: A9NJR8_PICSI (Histone H4 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TrEMBL
Match: A9PA83_POPTR (Histone H4 OS=Populus trichocarpa GN=POPTR_0005s11740g PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TrEMBL
Match: H9MAC8_PINRA (Histone H4 OS=Pinus radiata GN=0_18315_01 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TrEMBL
Match: B9MST3_SOYBN (Histone H4 OS=Glycine max GN=GLYMA_02G224100 PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TAIR10
Match: AT1G07660.1 (AT1G07660.1 Histone superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TAIR10
Match: AT1G07820.1 (AT1G07820.1 Histone superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TAIR10
Match: AT2G28740.1 (AT2G28740.1 histone H4)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TAIR10
Match: AT3G45930.1 (AT3G45930.1 Histone superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. TAIR10
Match: AT3G53730.1 (AT3G53730.1 Histone superfamily protein)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. NCBI nr
Match: gi|976922550|gb|KVI06931.1| (Histone core [Cynara cardunculus var. scolymus])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 107 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 166

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 167 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 209

[Close]

BLAST of CSPI01G12670 vs. NCBI nr
Match: gi|641854208|gb|KDO73016.1| (hypothetical protein CISIN_1g047769mg, partial [Citrus sinensis])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 29  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 88

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 89  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131

[Close]

BLAST of CSPI01G12670 vs. NCBI nr
Match: gi|15226944|ref|NP_180441.1| (histone H4 [Arabidopsis thaliana])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. NCBI nr
Match: gi|960491942|ref|XP_014751185.1| (PREDICTED: uncharacterized protein LOC100841093 [Brachypodium distachyon])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CSPI01G12670 vs. NCBI nr
Match: gi|670426610|ref|XP_008653962.1| (PREDICTED: uncharacterized protein LOC103634138 [Zea mays])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of CSPI01G12670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H4_EUCGL	1.0e-50	100.00	Histone H4 OS=Eucalyptus globulus PE=3 SV=3	[more]
H4_CHEMJ	1.0e-50	100.00	Histone H4 OS=Chelidonium majus PE=3 SV=3	[more]
H4_ARATH	1.0e-50	100.00	Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2	[more]
H41_WHEAT	1.0e-50	100.00	Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2	[more]
H4_PEA	1.0e-50	100.00	Histone H4 OS=Pisum sativum PE=1 SV=2	[more]

BLAST of CSPI01G12670 vs. TrEMBL


Match Name	E-value	Identity	Description
A2WWR4_ORYSI	1.2e-48	100.00	Histone H4 OS=Oryza sativa subsp. indica GN=OsI_04340 PE=3 SV=1	[more]
A9NJR8_PICSI	1.2e-48	100.00	Histone H4 OS=Picea sitchensis PE=2 SV=1	[more]
A9PA83_POPTR	1.2e-48	100.00	Histone H4 OS=Populus trichocarpa GN=POPTR_0005s11740g PE=2 SV=1	[more]
H9MAC8_PINRA	1.2e-48	100.00	Histone H4 OS=Pinus radiata GN=0_18315_01 PE=3 SV=1	[more]
B9MST3_SOYBN	1.2e-48	100.00	Histone H4 OS=Glycine max GN=GLYMA_02G224100 PE=2 SV=1	[more]

BLAST of CSPI01G12670 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07660.1	5.9e-52	100.00	Histone superfamily protein	[more]
AT1G07820.1	5.9e-52	100.00	Histone superfamily protein	[more]
AT2G28740.1	5.9e-52	100.00	histone H4	[more]
AT3G45930.1	5.9e-52	100.00	Histone superfamily protein	[more]
AT3G53730.1	5.9e-52	100.00	Histone superfamily protein	[more]

BLAST of CSPI01G12670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976922550\|gb\|KVI06931.1\|	1.7e-48	100.00	Histone core [Cynara cardunculus var. scolymus]	[more]
gi\|641854208\|gb\|KDO73016.1\|	1.7e-48	100.00	hypothetical protein CISIN_1g047769mg, partial [Citrus sinensis]	[more]
gi\|15226944\|ref\|NP_180441.1\|	1.7e-48	100.00	histone H4 [Arabidopsis thaliana]	[more]
gi\|960491942\|ref\|XP_014751185.1\|	1.7e-48	100.00	PREDICTED: uncharacterized protein LOC100841093 [Brachypodium distachyon]	[more]
gi\|670426610\|ref\|XP_008653962.1\|	1.7e-48	100.00	PREDICTED: uncharacterized protein LOC103634138 [Zea mays]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001951	Histone_H4
IPR009072	Histone-fold
IPR019809	Histone_H4_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G12670.1	CSPI01G12670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 89..100 score: 2.2E-63coord: 5..16 score: 2.2E-63coord: 77..89 score: 2.2E-63coord: 20..39 score: 2.2E-63coord: 40..60 score: 2.2E-63coord: 62..76 score: 2.2
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 score: 2.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 2..103 score: 1.8
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 3..102 score: 4.04
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19 scor
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..103 score: 1.1E
None	No IPR available	PFAM	PF15511	CENP-T_C	coord: 35..96 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G12670	Lsi02G014210	Bottle gourd (USVL1VR-Ls)	cpilsiB023
CSPI01G12670	MELO3C005059.2	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G12670	CsaV3_1G012840	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G12670	Cla97C03G053190	Watermelon (97103) v2	cpiwmbB034
CSPI01G12670	Bhi08G000257	Wax gourd	cpiwgoB037
CSPI01G12670	Cucsa.226890	Cucumber (Gy14) v1	cgycpiB337
CSPI01G12670	CmaCh01G005460	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G12670	CmaCh13G001760	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G12670	CmoCh13G001800	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G12670	CsGy1G012690	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G12670	Carg12320	Silver-seed gourd	carcpiB0477

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G12670	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G12670	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G12670	Cucumber (Chinese Long) v2	cpicuB048
CSPI01G12670	Melon (DHL92) v3.5.1	cpimeB010
CSPI01G12670	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G12670	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G12670	Watermelon (97103) v1	cpiwmB012
CSPI01G12670	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G12670	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G12670	Silver-seed gourd	carcpiB0761
CSPI01G12670	Cucumber (Chinese Long) v3	cpicucB059
CSPI01G12670	Wild cucumber (PI 183967)	cpicpiB048