Csa1G084320 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G084320
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Histone H4; contains IPR001951 (Histone H4), IPR009072 (Histone-fold)
Location	Chr1 : 8049345 .. 8050080 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACTTCATTTATCTCAGCACACTTTCTTCATCGAAATCTCCATCAACCAAAGCAACCAACAATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAGGGTTGTCGAAACCTAAGGTTTGGATTTGGGGGTTTTGTGGTTCGGTGATTTGGATGTGATTTTGGAGAGGAATTGTATATTATTGGTGATTTTGTTAGATTCAAACTATGATATCAGTCTGTAGGTTGTTAATTGTTTCTCTCGTAATTGGAAATCTTGATGCGCGTAATTAGAAACTGTTCTAGTTTTGTTCATCTTCAAGTTCACTATGTTTCTCTTCTGATTATTGGATCTGATTCTTAAAGCATAATTTTAGCTCTCAAGTAATTTCTAACTTCAAACTTGTTGCATCGATGTTCATAAAATCAAGATGAGATTGTTCATTAAATTTATATAATAATATCACATTAAACCTTGTACTC

mRNA sequence

ATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAG

Coding sequence (CDS)

ATGTCCGGCAGAGGCAAAGGAGGAAAAGGTCTCGGAAAGGGAGGAGCCAAGAGGCATCGGAAAGTTCTGAGGGACAACATCCAAGGAATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGGGGCGTAAAGCGTATCAGCGGCCTGATCTATGAAGAAACTCGCGGCGTTCTCAAGATCTTCCTCGAAAATGTCATTCGTGACGCTGTCACTTACACTGAGCATGCTCGCCGGAAGACTGTCACCGCCATGGATGTTGTGTACGCGCTCAAGAGGCAAGGACGTACTTTATACGGCTTCGGAGGTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*

Homology

[Close]

BLAST of Csa1G084320 vs. Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-52
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-52
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-52
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-52
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-52
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TrEMBL
Match: Q6NR90_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TrEMBL
Match: L0P1L9_9POAL (Histone H4 OS=Phyllostachys edulis GN=PH01B001I13.20 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TrEMBL
Match: A0A0B2SBA2_GLYSO (Histone H4 OS=Glycine soja GN=glysoja_005470 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TrEMBL
Match: A0A0A0LSH2_CUCSA (Histone H4 OS=Cucumis sativus GN=Csa_1G084320 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TrEMBL
Match: A0A0D3C2P6_BRAOL (Histone H4 OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TAIR10
Match: AT1G07660.1 (AT1G07660.1 Histone superfamily protein)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-53
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TAIR10
Match: AT1G07820.1 (AT1G07820.1 Histone superfamily protein)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-53
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TAIR10
Match: AT2G28740.1 (AT2G28740.1 histone H4)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-53
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TAIR10
Match: AT3G45930.1 (AT3G45930.1 Histone superfamily protein)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-53
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. TAIR10
Match: AT3G53730.1 (AT3G53730.1 Histone superfamily protein)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-53
Identity = 103/103 (100.00%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Csa1G084320 vs. NCBI nr
Match: gi|976922550|gb|KVI06931.1| (Histone core [Cynara cardunculus var. scolymus])

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 107 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 166

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 167 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 209

[Close]

BLAST of Csa1G084320 vs. NCBI nr
Match: gi|629086337|gb|KCW52694.1| (hypothetical protein EUGRSUZ_J02062, partial [Eucalyptus grandis])

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 4   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 63

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 64  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 106

[Close]

BLAST of Csa1G084320 vs. NCBI nr
Match: gi|413947466|gb|AFW80115.1| (hypothetical protein ZEAMMB73_313798 [Zea mays])

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 119 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 178

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 179 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 221

[Close]

BLAST of Csa1G084320 vs. NCBI nr
Match: gi|960491942|ref|XP_014751185.1| (PREDICTED: uncharacterized protein LOC100841093 [Brachypodium distachyon])

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 152 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 211

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 212 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 254

HSP 2 Score: 206.1 bits (523), Expect = 3.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 29  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 88

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 89  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 131

The following BLAST results are available for this feature:

BLAST of Csa1G084320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H4_EUCGL	1.9e-52	100.00	Histone H4 OS=Eucalyptus globulus PE=3 SV=3	[more]
H4_CHEMJ	1.9e-52	100.00	Histone H4 OS=Chelidonium majus PE=3 SV=3	[more]
H4_ARATH	1.9e-52	100.00	Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2	[more]
H41_WHEAT	1.9e-52	100.00	Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2	[more]
H4_PEA	1.9e-52	100.00	Histone H4 OS=Pisum sativum PE=1 SV=2	[more]

BLAST of Csa1G084320 vs. TrEMBL


Match Name	E-value	Identity	Description
Q6NR90_ARATH	2.1e-50	100.00	Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=2 SV=1	[more]
L0P1L9_9POAL	2.1e-50	100.00	Histone H4 OS=Phyllostachys edulis GN=PH01B001I13.20 PE=3 SV=1	[more]
A0A0B2SBA2_GLYSO	2.1e-50	100.00	Histone H4 OS=Glycine soja GN=glysoja_005470 PE=3 SV=1	[more]
A0A0A0LSH2_CUCSA	2.1e-50	100.00	Histone H4 OS=Cucumis sativus GN=Csa_1G084320 PE=3 SV=1	[more]
A0A0D3C2P6_BRAOL	2.1e-50	100.00	Histone H4 OS=Brassica oleracea var. oleracea PE=3 SV=1	[more]

BLAST of Csa1G084320 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07660.1	1.1e-53	100.00	Histone superfamily protein	[more]
AT1G07820.1	1.1e-53	100.00	Histone superfamily protein	[more]
AT2G28740.1	1.1e-53	100.00	histone H4	[more]
AT3G45930.1	1.1e-53	100.00	Histone superfamily protein	[more]
AT3G53730.1	1.1e-53	100.00	Histone superfamily protein	[more]

BLAST of Csa1G084320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976922550\|gb\|KVI06931.1\|	3.0e-50	100.00	Histone core [Cynara cardunculus var. scolymus]	[more]
gi\|629086337\|gb\|KCW52694.1\|	3.0e-50	100.00	hypothetical protein EUGRSUZ_J02062, partial [Eucalyptus grandis]	[more]
gi\|413947466\|gb\|AFW80115.1\|	3.0e-50	100.00	hypothetical protein ZEAMMB73_313798 [Zea mays]	[more]
gi\|960491942\|ref\|XP_014751185.1\|	3.0e-50	100.00	PREDICTED: uncharacterized protein LOC100841093 [Brachypodium distachyon]	[more]
gi\|960491942\|ref\|XP_014751185.1\|	3.0e-50	100.00	PREDICTED: uncharacterized protein LOC100841093 [Brachypodium distachyon]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001951	Histone_H4
IPR009072	Histone-fold
IPR019809	Histone_H4_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU096662	cucumber EST collection version 3.0	transcribed_cluster
CU098718	cucumber EST collection version 3.0	transcribed_cluster
CU098891	cucumber EST collection version 3.0	transcribed_cluster
CU134713	cucumber EST collection version 3.0	transcribed_cluster
CU175734	cucumber EST collection version 3.0	transcribed_cluster
CU177264	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G084320.1	Csa1G084320.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU177264	CU177264	transcribed_cluster
CU096662	CU096662	transcribed_cluster
CU134713	CU134713	transcribed_cluster
CU098718	CU098718	transcribed_cluster
CU175734	CU175734	transcribed_cluster
CU098891	CU098891	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 89..100 score: 2.2E-63coord: 5..16 score: 2.2E-63coord: 77..89 score: 2.2E-63coord: 20..39 score: 2.2E-63coord: 40..60 score: 2.2E-63coord: 62..76 score: 2.2
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 score: 2.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 2..103 score: 1.8
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 3..102 score: 4.04
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19 scor
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..103 score: 1.1E
None	No IPR available	PFAM	PF15511	CENP-T_C	coord: 35..96 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G084320	Cla005035	Watermelon (97103) v1	cuwmB010
Csa1G084320	ClCG03G002190	Watermelon (Charleston Gray)	cuwcgB037
Csa1G084320	Lsi02G014210	Bottle gourd (USVL1VR-Ls)	culsiB024
Csa1G084320	MELO3C005059.2	Melon (DHL92) v3.6.1	cumedB010
Csa1G084320	Cla97C03G053190	Watermelon (97103) v2	cuwmbB034
Csa1G084320	Bhi08G000257	Wax gourd	cuwgoB037
Csa1G084320	Cucsa.226890	Cucumber (Gy14) v1	cgycuB323
Csa1G084320	CmaCh01G005460	Cucurbita maxima (Rimu)	cmacuB431
Csa1G084320	CmaCh13G001760	Cucurbita maxima (Rimu)	cmacuB203
Csa1G084320	CmoCh13G001800	Cucurbita moschata (Rifu)	cmocuB188
Csa1G084320	CsGy1G012690	Cucumber (Gy14) v2	cgybcuB001
Csa1G084320	Carg12320	Silver-seed gourd	carcuB0472

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G084320	Cucumber (Chinese Long) v2	cucuB041
Csa1G084320	Cucurbita moschata (Rifu)	cmocuB421
Csa1G084320	Melon (DHL92) v3.5.1	cumeB015
Csa1G084320	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G084320	Cucurbita pepo (Zucchini)	cpecuB528
Csa1G084320	Silver-seed gourd	carcuB0745