CsGy1G012240 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G012240
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionLate embryogenesis abundant protein 2
LocationChr1 : 7708084 .. 7708968 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGTGAAGAAAAGATCGGTGCATGTTGGAAAGAAGAATTTGGGATCAAAACAAAAATGGCTCTCAGCATTTCCTTAGCCAAGAATGTCATCTTCAACCTCTGCAAGCCCAAAGCGGCCTTCGCCAATTCTTCTCCTTCATTATTTCTCAATAATCACTCCACCAAACTTTCATCCCTCTCTTTCTCTACTTCTGCTTCTAAACATCCATCTTGGGTATAATATATTTTAATATGGTCTCGGAGTACATGAACATAATTTTTCTTTTTTGTTAACAAAGGTTTTTCAATTGTTGTATAGGATGGAAATGGCGTGGATGCGAACAGAGACTCGAGTCCGGACTATGCGTATGAAGACGCGAAGGAACAAGCGAAGGAAGAGGCCAAAGAAATGAAGGAACGAGCGAAGGAAGGGGCCAAAGAAATGAAGGAGAAGGCGAAGGACTACTCGCAGGAGACCAAAGAGAAGGTGGCGGAGAAAACAAACAAAGCCTCAGAGACGGCCTCGGCAGCGAAGGAGAAGGTAAAAGACTACGCACGTGATGCCAAAGAGAAGGCGAAGGAAGGAACAAACCGAGCGACAGAGACAGTGGAGGAGGCGACGGAGAGAGCGAAAGAGGGTGCAAAGGGGATGAAGGATAAGACAAAGGAGATGGCGAAGGAAGGGACAAATAAGGCGACGGAGACGATGCAGAATATTGGGGAGAAAGCGAAGCAGACGGTGCAAGGGGCGTGGGAAGCTGCAAAGGATACAACAAATAAGGTGAAGGAGAAGGTAATGGGGACAAATGATGAGGAAGAGGATGAAGAAGGAAGGAGGGGGAAAGTGATGGATGAAGATGTTGTGGATGTTAGGAGAAAAGCTGGGAACAAGTATGATGAATGA

mRNA sequence

TTTTGTGAAGAAAAGATCGGTGCATGTTGGAAAGAAGAATTTGGGATCAAAACAAAAATGGCTCTCAGCATTTCCTTAGCCAAGAATGTCATCTTCAACCTCTGCAAGCCCAAAGCGGCCTTCGCCAATTCTTCTCCTTCATTATTTCTCAATAATCACTCCACCAAACTTTCATCCCTCTCTTTCTCTACTTCTGCTTCTAAACATCCATCTTGGGATGGAAATGGCGTGGATGCGAACAGAGACTCGAGTCCGGACTATGCGTATGAAGACGCGAAGGAACAAGCGAAGGAAGAGGCCAAAGAAATGAAGGAACGAGCGAAGGAAGGGGCCAAAGAAATGAAGGAGAAGGCGAAGGACTACTCGCAGGAGACCAAAGAGAAGGTGGCGGAGAAAACAAACAAAGCCTCAGAGACGGCCTCGGCAGCGAAGGAGAAGGTAAAAGACTACGCACGTGATGCCAAAGAGAAGGCGAAGGAAGGAACAAACCGAGCGACAGAGACAGTGGAGGAGGCGACGGAGAGAGCGAAAGAGGGTGCAAAGGGGATGAAGGATAAGACAAAGGAGATGGCGAAGGAAGGGACAAATAAGGCGACGGAGACGATGCAGAATATTGGGGAGAAAGCGAAGCAGACGGTGCAAGGGGCGTGGGAAGCTGCAAAGGATACAACAAATAAGGTGAAGGAGAAGGTAATGGGGACAAATGATGAGGAAGAGGATGAAGAAGGAAGGAGGGGGAAAGTGATGGATGAAGATGTTGTGGATGTTAGGAGAAAAGCTGGGAACAAGTATGATGAATGA

Coding sequence (CDS)

ATGGCTCTCAGCATTTCCTTAGCCAAGAATGTCATCTTCAACCTCTGCAAGCCCAAAGCGGCCTTCGCCAATTCTTCTCCTTCATTATTTCTCAATAATCACTCCACCAAACTTTCATCCCTCTCTTTCTCTACTTCTGCTTCTAAACATCCATCTTGGGATGGAAATGGCGTGGATGCGAACAGAGACTCGAGTCCGGACTATGCGTATGAAGACGCGAAGGAACAAGCGAAGGAAGAGGCCAAAGAAATGAAGGAACGAGCGAAGGAAGGGGCCAAAGAAATGAAGGAGAAGGCGAAGGACTACTCGCAGGAGACCAAAGAGAAGGTGGCGGAGAAAACAAACAAAGCCTCAGAGACGGCCTCGGCAGCGAAGGAGAAGGTAAAAGACTACGCACGTGATGCCAAAGAGAAGGCGAAGGAAGGAACAAACCGAGCGACAGAGACAGTGGAGGAGGCGACGGAGAGAGCGAAAGAGGGTGCAAAGGGGATGAAGGATAAGACAAAGGAGATGGCGAAGGAAGGGACAAATAAGGCGACGGAGACGATGCAGAATATTGGGGAGAAAGCGAAGCAGACGGTGCAAGGGGCGTGGGAAGCTGCAAAGGATACAACAAATAAGGTGAAGGAGAAGGTAATGGGGACAAATGATGAGGAAGAGGATGAAGAAGGAAGGAGGGGGAAAGTGATGGATGAAGATGTTGTGGATGTTAGGAGAAAAGCTGGGAACAAGTATGATGAATGA

Protein sequence

MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDANRDSSPDYAYEDAKEQAKEEAKEMKERAKEGAKEMKEKAKDYSQETKEKVAEKTNKASETASAAKEKVKDYARDAKEKAKEGTNRATETVEEATERAKEGAKGMKDKTKEMAKEGTNKATETMQNIGEKAKQTVQGAWEAAKDTTNKVKEKVMGTNDEEEDEEGRRGKVMDEDVVDVRRKAGNKYDE
Homology
[Close]
BLAST of CsGy1G012240 vs. NCBI nr
Match: KGN64690.1 (hypothetical protein Csa_1G074950 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0 

Query: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
           MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA
Sbjct: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60

Query: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEEEDEEGRRGKVMDEDVVDVRRK 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  N+EEEDEEGRRGKVMDEDVVDVRRK
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTNNEEEDEEGRRGKVMDEDVVDVRRK 240

Query: 241 AGNKYDE 248
           AGNKYDE
Sbjct: 241 AGNKYDE 247

[Close]
BLAST of CsGy1G012240 vs. NCBI nr
Match: XP_004146655.2 (PREDICTED: late embryogenesis abundant protein, group 3-like [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0 

Query: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
           MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA
Sbjct: 29  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 88

Query: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 89  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 148

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 149 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 208

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEEEDEEGRRGKVMDEDVVDVRRK 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  N+EEEDEEGRRGKVMDEDVVDVRRK
Sbjct: 209 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTNNEEEDEEGRRGKVMDEDVVDVRRK 268

Query: 241 AGNKYDE 248
           AGNKYDE
Sbjct: 269 AGNKYDE 275

[Close]
BLAST of CsGy1G012240 vs. NCBI nr
Match: XP_008442715.1 (PREDICTED: ABA-inducible protein PHV A1-like [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0 

Query: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
          MA+SISLAKNVIFNLCKPKAAFANSSPSLFLN  STK+SSLSFSTSASKHPSWDGNGVD 
Sbjct: 1  MAVSISLAKNVIFNLCKPKAAFANSSPSLFLNK-STKISSLSFSTSASKHPSWDGNGVDP 60

Query: 61 NRDS 65
          NRDS
Sbjct: 61 NRDS 63

[Close]
BLAST of CsGy1G012240 vs. NCBI nr
Match: XP_022994469.1 (late embryogenesis abundant protein, group 3-like [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
          MA+SISLAKNVIFNLCK   AF N+SPS  L  +STK+S +SF+TSASK P W+G+GVDA
Sbjct: 1  MAVSISLAKNVIFNLCK---AFPNASPSPTL-RYSTKISRVSFTTSASKQP-WNGHGVDA 60

Query: 61 NRDSSP 67
          NRD  P
Sbjct: 61 NRDPRP 61

[Close]
BLAST of CsGy1G012240 vs. NCBI nr
Match: XP_023542553.1 (late embryogenesis abundant protein, group 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 9.2e-09
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
          MA+SISLAKNVIFNLCK   AF N+SPS  L  +S+K+S +SF+TSASK P W+G+G DA
Sbjct: 1  MAVSISLAKNVIFNLCK---AFPNASPSPTL-RYSSKISRVSFTTSASKQP-WNGHGADA 60

Query: 61 NRDSSP 67
          NRD  P
Sbjct: 61 NRDPRP 61

[Close]
BLAST of CsGy1G012240 vs. TrEMBL
Match: tr|A0A0A0LRY0|A0A0A0LRY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0 

Query: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
           MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA
Sbjct: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60

Query: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEEEDEEGRRGKVMDEDVVDVRRK 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  N+EEEDEEGRRGKVMDEDVVDVRRK
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTNNEEEDEEGRRGKVMDEDVVDVRRK 240

Query: 241 AGNKYDE 248
           AGNKYDE
Sbjct: 241 AGNKYDE 247

[Close]
BLAST of CsGy1G012240 vs. TrEMBL
Match: tr|A0A1S3B5V3|A0A1S3B5V3_CUCME (ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0 

Query: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
          MA+SISLAKNVIFNLCKPKAAFANSSPSLFLN  STK+SSLSFSTSASKHPSWDGNGVD 
Sbjct: 1  MAVSISLAKNVIFNLCKPKAAFANSSPSLFLNK-STKISSLSFSTSASKHPSWDGNGVDP 60

Query: 61 NRDS 65
          NRDS
Sbjct: 61 NRDS 63

The following BLAST results are available for this feature:
BLAST of CsGy1G012240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64690.12.8e-2698.79hypothetical protein Csa_1G074950 [Cucumis sativus][more]
XP_004146655.22.8e-2698.79PREDICTED: late embryogenesis abundant protein, group 3-like [Cucumis sativus][more]
XP_008442715.11.0e-2092.19PREDICTED: ABA-inducible protein PHV A1-like [Cucumis melo][more]
XP_022994469.11.1e-0968.18late embryogenesis abundant protein, group 3-like [Cucurbita maxima][more]
XP_023542553.19.2e-0965.15late embryogenesis abundant protein, group 3 [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy1G012240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G012240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G012240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRY0|A0A0A0LRY0_CUCSA1.9e-2698.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1[more]
tr|A0A1S3B5V3|A0A1S3B5V3_CUCME6.9e-2192.19ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 S... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G012240.1CsGy1G012240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..112
NoneNo IPR availableCOILSCoilCoilcoord: 121..156
NoneNo IPR availableGENE3DG3DSA:1.10.287.700coord: 148..226
e-value: 4.2E-8
score: 35.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..247
NoneNo IPR availablePANTHERPTHR23241LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATEDcoord: 25..239
NoneNo IPR availablePANTHERPTHR23241:SF65LATE EMBRYOGENESIS ABUNDANT PROTEIN LEA FAMILY PROTEIN-RELATEDcoord: 25..239
NoneNo IPR availableSUPERFAMILYSSF58113Apolipoprotein A-Icoord: 71..211

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G012240Cla019707Watermelon (97103) v1cgybwmB025
CsGy1G012240Csa1G074950Cucumber (Chinese Long) v2cgybcuB001
CsGy1G012240MELO3C002615Melon (DHL92) v3.5.1cgybmeB022
CsGy1G012240ClCG03G008140Watermelon (Charleston Gray)cgybwcgB045
CsGy1G012240CSPI01G12220Wild cucumber (PI 183967)cgybcpiB001
CsGy1G012240CmaCh18G003790Cucurbita maxima (Rimu)cgybcmaB086
CsGy1G012240CmoCh18G003590Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G012240Lsi02G007640Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G012240Cp4.1LG09g08330Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G012240MELO3C002615.2Melon (DHL92) v3.6.1cgybmedB020
CsGy1G012240CsaV3_1G012410Cucumber (Chinese Long) v3cgybcucB002
CsGy1G012240Cla97C03G059440Watermelon (97103) v2cgybwmbB043
CsGy1G012240BhiUN316G22Wax gourdcgybwgoB024
CsGy1G012240Carg14619Silver-seed gourdcarcgybB0161
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G012240Cucurbita pepo (Zucchini)cgybcpeB025
CsGy1G012240Cucurbita pepo (Zucchini)cgybcpeB066
CsGy1G012240Cucurbita pepo (Zucchini)cgybcpeB070
CsGy1G012240Cucurbita pepo (Zucchini)cgybcpeB102
CsGy1G012240Cucurbita pepo (Zucchini)cgybcpeB140
CsGy1G012240Cucumber (Chinese Long) v2cgybcuB031
CsGy1G012240Cucumber (Chinese Long) v2cgybcuB040
CsGy1G012240Bottle gourd (USVL1VR-Ls)cgyblsiB015
CsGy1G012240Melon (DHL92) v3.5.1cgybmeB076
CsGy1G012240Melon (DHL92) v3.6.1cgybmedB072
CsGy1G012240Watermelon (Charleston Gray)cgybwcgB010
CsGy1G012240Watermelon (Charleston Gray)cgybwcgB013
CsGy1G012240Watermelon (97103) v1cgybwmB044
CsGy1G012240Watermelon (97103) v1cgybwmB077
CsGy1G012240Wild cucumber (PI 183967)cgybcpiB028
CsGy1G012240Wild cucumber (PI 183967)cgybcpiB037
CsGy1G012240Wild cucumber (PI 183967)cgybcpiB044
CsGy1G012240Silver-seed gourdcarcgybB0181
CsGy1G012240Silver-seed gourdcarcgybB0551
CsGy1G012240Silver-seed gourdcarcgybB0638
CsGy1G012240Silver-seed gourdcarcgybB0936
CsGy1G012240Cucumber (Chinese Long) v3cgybcucB034
CsGy1G012240Cucumber (Chinese Long) v3cgybcucB045
CsGy1G012240Watermelon (97103) v2cgybwmbB002
CsGy1G012240Watermelon (97103) v2cgybwmbB024
CsGy1G012240Wax gourdcgybwgoB020
CsGy1G012240Wax gourdcgybwgoB070
CsGy1G012240Cucumber (Gy14) v2cgybcgybB025
CsGy1G012240Cucumber (Gy14) v2cgybcgybB035
CsGy1G012240Cucumber (Gy14) v2cgybcgybB041
CsGy1G012240Cucurbita maxima (Rimu)cgybcmaB002
CsGy1G012240Cucurbita maxima (Rimu)cgybcmaB074
CsGy1G012240Cucurbita maxima (Rimu)cgybcmaB108
CsGy1G012240Cucurbita maxima (Rimu)cgybcmaB125
CsGy1G012240Cucurbita maxima (Rimu)cgybcmaB142
CsGy1G012240Cucurbita moschata (Rifu)cgybcmoB003
CsGy1G012240Cucurbita moschata (Rifu)cgybcmoB068
CsGy1G012240Cucurbita moschata (Rifu)cgybcmoB101
CsGy1G012240Cucurbita moschata (Rifu)cgybcmoB115
CsGy1G012240Cucurbita moschata (Rifu)cgybcmoB133