BhiUN316G22 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN316G22
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	ABA-inducible protein PHV A1-like
Location	Contig316 : 352883 .. 353751 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCAGAAAAACATAATACAAATTAAAGGAAATCGGTGTTAGGAAGAAGAAATTTGAAAGAAAATGGCAGTGAGCATTTCGTTAGCCAAGAATGTGATCTTCAACCTCTGCAAGCCCAAGGCTTTCCCTAATCCTAACGCTTCTCCTCCATCTCTCAAACGCTCCACCAAGATTTCATCCCTCTCTTTCTCTACTTCCGCCTCTAAACATCCCTCATGGGTACAACTTTTTCTTTTCCGTCGTTTTCTTTTGTTTACTTTCTAACATGGTATCAGGGTCTGAACTCTATTTTTCAATTGTGGTGTAGGATGGAAAAGAAGTGGATGCGAATAGAGACTCGAGGGCGGACTATGCATACGAAGATGCTAAGGAACGAGCGAAGGAAGGAGCCCAAGAAATGAAGGAGAAGGCAAAAGACTATGCGAAGGGGACGAAAGACATGGCAGTGGAAGAAACAAGCAAAGCCTCAGAGACAGCCCGGGCGGCGAAGGAGAAGGTAAAAGACTACACGCATGACGCCAAGGAGAAGGTGAAGGAAGGAACGAACCGAGCAGCGGAGACAGCGGAGGCGGCGACGGAGAGAGCGAAGGAAGGGGCTAAGGGAATGAAGGAGAAGGCGGAGGAGATGGCGGGGGAGGGGAGGAACAAGGTGCAGAATATTGGGGAGAAGGCGAAGGAGACGGTGCAAGGGGCATGGGAGGCGGCAAAGGATACGACGAATAAGATAAAGGAGAAGGTAATGGGGAGTGAGGAAGAGGGTGAAGAAGGAAGGAGGAGGAGGAGGAGGGAGAGGGAGGATGAAGATGGGAAGGTGATGGATGAAGATGTTGATCTTAGGAGAAAAGCTGGGACCAAGTTCGATGAATGA

mRNA sequence

AATTCAGAAAAACATAATACAAATTAAAGGAAATCGGTGTTAGGAAGAAGAAATTTGAAAGAAAATGGCAGTGAGCATTTCGTTAGCCAAGAATGTGATCTTCAACCTCTGCAAGCCCAAGGCTTTCCCTAATCCTAACGCTTCTCCTCCATCTCTCAAACGCTCCACCAAGATTTCATCCCTCTCTTTCTCTACTTCCGCCTCTAAACATCCCTCATGGGATGGAAAAGAAGTGGATGCGAATAGAGACTCGAGGGCGGACTATGCATACGAAGATGCTAAGGAACGAGCGAAGGAAGGAGCCCAAGAAATGAAGGAGAAGGCAAAAGACTATGCGAAGGGGACGAAAGACATGGCAGTGGAAGAAACAAGCAAAGCCTCAGAGACAGCCCGGGCGGCGAAGGAGAAGGTAAAAGACTACACGCATGACGCCAAGGAGAAGGTGAAGGAAGGAACGAACCGAGCAGCGGAGACAGCGGAGGCGGCGACGGAGAGAGCGAAGGAAGGGGCTAAGGGAATGAAGGAGAAGGCGGAGGAGATGGCGGGGGAGGGGAGGAACAAGGTGCAGAATATTGGGGAGAAGGCGAAGGAGACGGTGCAAGGGGCATGGGAGGCGGCAAAGGATACGACGAATAAGATAAAGGAGAAGGTAATGGGGAGTGAGGAAGAGGGTGAAGAAGGAAGGAGGAGGAGGAGGAGGGAGAGGGAGGATGAAGATGGGAAGGTGATGGATGAAGATGTTGATCTTAGGAGAAAAGCTGGGACCAAGTTCGATGAATGA

Coding sequence (CDS)

ATGGCAGTGAGCATTTCGTTAGCCAAGAATGTGATCTTCAACCTCTGCAAGCCCAAGGCTTTCCCTAATCCTAACGCTTCTCCTCCATCTCTCAAACGCTCCACCAAGATTTCATCCCTCTCTTTCTCTACTTCCGCCTCTAAACATCCCTCATGGGATGGAAAAGAAGTGGATGCGAATAGAGACTCGAGGGCGGACTATGCATACGAAGATGCTAAGGAACGAGCGAAGGAAGGAGCCCAAGAAATGAAGGAGAAGGCAAAAGACTATGCGAAGGGGACGAAAGACATGGCAGTGGAAGAAACAAGCAAAGCCTCAGAGACAGCCCGGGCGGCGAAGGAGAAGGTAAAAGACTACACGCATGACGCCAAGGAGAAGGTGAAGGAAGGAACGAACCGAGCAGCGGAGACAGCGGAGGCGGCGACGGAGAGAGCGAAGGAAGGGGCTAAGGGAATGAAGGAGAAGGCGGAGGAGATGGCGGGGGAGGGGAGGAACAAGGTGCAGAATATTGGGGAGAAGGCGAAGGAGACGGTGCAAGGGGCATGGGAGGCGGCAAAGGATACGACGAATAAGATAAAGGAGAAGGTAATGGGGAGTGAGGAAGAGGGTGAAGAAGGAAGGAGGAGGAGGAGGAGGGAGAGGGAGGATGAAGATGGGAAGGTGATGGATGAAGATGTTGATCTTAGGAGAAAAGCTGGGACCAAGTTCGATGAATGA

Protein sequence

MAVSISLAKNVIFNLCKPKAFPNPNASPPSLKRSTKISSLSFSTSASKHPSWDGKEVDANRDSRADYAYEDAKERAKEGAQEMKEKAKDYAKGTKDMAVEETSKASETARAAKEKVKDYTHDAKEKVKEGTNRAAETAEAATERAKEGAKGMKEKAEEMAGEGRNKVQNIGEKAKETVQGAWEAAKDTTNKIKEKVMGSEEEGEEGRRRRRREREDEDGKVMDEDVDLRRKAGTKFDE

Homology

[Close]

BLAST of BhiUN316G22 vs. TrEMBL
Match: tr|A0A1S3B5V3|A0A1S3B5V3_CUCME (ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-13
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKPKAFPNPNASPP-SLKRSTKISSLSFSTSASKHPSWDGKEVDA 60
          MAVSISLAKNVIFNLCKPKA    N+SP   L +STKISSLSFSTSASKHPSWDG  VD 
Sbjct: 1  MAVSISLAKNVIFNLCKPKA-AFANSSPSLFLNKSTKISSLSFSTSASKHPSWDGNGVDP 60

Query: 61 NR 62
          NR
Sbjct: 61 NR 61

[Close]

BLAST of BhiUN316G22 vs. TrEMBL
Match: tr|A0A0A0LRY0|A0A0A0LRY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.7e-13
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKPK-AFPNPNASPPSLKRSTKISSLSFSTSASKHPSWDGKEVDA 60
          MA+SISLAKNVIFNLCKPK AF N + S      STK+SSLSFSTSASKHPSWDG  VDA
Sbjct: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60

Query: 61 NR 62
          NR
Sbjct: 61 NR 62

[Close]

BLAST of BhiUN316G22 vs. NCBI nr
Match: XP_008442715.1 (PREDICTED: ABA-inducible protein PHV A1-like [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 7.7e-13
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKPKAFPNPNASPP-SLKRSTKISSLSFSTSASKHPSWDGKEVDA 60
          MAVSISLAKNVIFNLCKPKA    N+SP   L +STKISSLSFSTSASKHPSWDG  VD 
Sbjct: 1  MAVSISLAKNVIFNLCKPKA-AFANSSPSLFLNKSTKISSLSFSTSASKHPSWDGNGVDP 60

Query: 61 NR 62
          NR
Sbjct: 61 NR 61

[Close]

BLAST of BhiUN316G22 vs. NCBI nr
Match: KGN64690.1 (hypothetical protein Csa_1G074950 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-12
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKPK-AFPNPNASPPSLKRSTKISSLSFSTSASKHPSWDGKEVDA 60
          MA+SISLAKNVIFNLCKPK AF N + S      STK+SSLSFSTSASKHPSWDG  VDA
Sbjct: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60

Query: 61 NR 62
          NR
Sbjct: 61 NR 62

[Close]

BLAST of BhiUN316G22 vs. NCBI nr
Match: XP_004146655.2 (PREDICTED: late embryogenesis abundant protein, group 3-like [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-12
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKPK-AFPNPNASPPSLKRSTKISSLSFSTSASKHPSWDGKEVDA 60
          MA+SISLAKNVIFNLCKPK AF N + S      STK+SSLSFSTSASKHPSWDG  VDA
Sbjct: 29 MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 88

Query: 61 NR 62
          NR
Sbjct: 89 NR 90

[Close]

BLAST of BhiUN316G22 vs. NCBI nr
Match: XP_022994469.1 (late embryogenesis abundant protein, group 3-like [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-09
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKPKAFPNPNASPPSLKRSTKISSLSFSTSASKHPSWDGKEVDAN 60
          MAVSISLAKNVIFNLC  KAFPN + S P+L+ STKIS +SF+TSASK P W+G  VDAN
Sbjct: 1  MAVSISLAKNVIFNLC--KAFPNASPS-PTLRYSTKISRVSFTTSASKQP-WNGHGVDAN 57

Query: 61 R 62
          R
Sbjct: 61 R 57

[Close]

BLAST of BhiUN316G22 vs. NCBI nr
Match: XP_023542553.1 (late embryogenesis abundant protein, group 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKPKAFPNPNASPPSLKRSTKISSLSFSTSASKHPSWDGKEVDAN 60
          MAVSISLAKNVIFNLC  KAFPN + S P+L+ S+KIS +SF+TSASK P W+G   DAN
Sbjct: 1  MAVSISLAKNVIFNLC--KAFPNASPS-PTLRYSSKISRVSFTTSASKQP-WNGHGADAN 57

Query: 61 R 62
          R
Sbjct: 61 R 57

The following BLAST results are available for this feature:

BLAST of BhiUN316G22 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of BhiUN316G22 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of BhiUN316G22 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5V3\|A0A1S3B5V3_CUCME	5.1e-13	79.03	ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 S...	[more]
tr\|A0A0A0LRY0\|A0A0A0LRY0_CUCSA	6.7e-13	75.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1	[more]

BLAST of BhiUN316G22 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442715.1	7.7e-13	79.03	PREDICTED: ABA-inducible protein PHV A1-like [Cucumis melo]	[more]
KGN64690.1	1.0e-12	75.81	hypothetical protein Csa_1G074950 [Cucumis sativus]	[more]
XP_004146655.2	1.0e-12	75.81	PREDICTED: late embryogenesis abundant protein, group 3-like [Cucumis sativus]	[more]
XP_022994469.1	1.4e-09	72.13	late embryogenesis abundant protein, group 3-like [Cucurbita maxima]	[more]
XP_023542553.1	1.2e-08	68.85	late embryogenesis abundant protein, group 3 [Cucurbita pepo subsp. pepo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN316M22	BhiUN316M22	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	COILS	Coil	Coil	coord: 69..89
None	No IPR available	GENE3D	G3DSA:1.20.120.20		coord: 57..209 e-value: 4.2E-7 score: 31.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..238
None	No IPR available	PANTHER	PTHR23241:SF65	LATE EMBRYOGENESIS ABUNDANT PROTEIN LEA FAMILY PROTEIN-RELATED	coord: 19..225
None	No IPR available	PANTHER	PTHR23241	LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED	coord: 19..225
None	No IPR available	SUPERFAMILY	SSF58113	Apolipoprotein A-I	coord: 67..189

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
BhiUN316G22	Csa1G074950	Cucumber (Chinese Long) v2	cuwgoB027
BhiUN316G22	MELO3C002615	Melon (DHL92) v3.5.1	mewgoB160
BhiUN316G22	ClCG03G008140	Watermelon (Charleston Gray)	wcgwgoB339
BhiUN316G22	CSPI01G12220	Wild cucumber (PI 183967)	cpiwgoB027
BhiUN316G22	Cucsa.126790	Cucumber (Gy14) v1	cgywgoB231
BhiUN316G22	CmaCh18G003790	Cucurbita maxima (Rimu)	cmawgoB0518
BhiUN316G22	Lsi02G007640	Bottle gourd (USVL1VR-Ls)	lsiwgoB237
BhiUN316G22	Cp4.1LG09g08330	Cucurbita pepo (Zucchini)	cpewgoB0038
BhiUN316G22	CsGy1G012240	Cucumber (Gy14) v2	cgybwgoB024
BhiUN316G22	MELO3C002615.2	Melon (DHL92) v3.6.1	medwgoB163
BhiUN316G22	Carg14619	Silver-seed gourd	carwgoB0191
BhiUN316G22	CsaV3_1G012410	Cucumber (Chinese Long) v3	cucwgoB030
BhiUN316G22	Cla019707	Watermelon (97103) v1	wgowmB466
BhiUN316G22	Cla97C03G059440	Watermelon (97103) v2	wgowmbB449

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None