Carg14619 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14619
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ABA-inducible protein PHV A1-like
Location	Cucurbita_argyrosperma_scaffold_181 : 688965 .. 689724 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTAAGCATTTCCTTAGCCAAAAATGTCATCTTCAACCTCTGCAAGGCCTTTCCCAATGCCTCTCCTTCTCCAACTCTCAGATATTCCTCCAAGATTTCAAGGGTCTCTTTCACTACTTCCGCCTCTAAGCAACCATGGGTATCATTCCTTACACCAATTTCATGATTTAAAATTGTTATTTTAGTGATTTGTTTCATGGGTTTTGTTCGTCGTATAGAATGGACATGGCACGGATGCAAACCGAGACCCGAGACCGGATTTAGCATACGAAGATGCGAAGGAAAGAGCCAAGGAAGGAGCCTATGACATGAAGGAGAAGGCGAAGGACTATGCCGAGGGGACGAAAGACATGGCGAAGGAAGAAACCAACAAGGCTGCGGAGACAGCGCGGGCTGCGAAGGAGAAGGTGAAAGACTACGCCGACGATGCGAGGGAGAAGGCTAAGGAAGGGACGAACAGGGTAGCGGAGACGGCGGAGGATGCAAGCGAGAGAGCGAAGGAAAGTGCGAAGGGAATGAAGGAGAAGACGGAGGAGATGGCGAAGGAGGGGACGAAGAAGGCGACGGAGACGGTGCAAAATATTGGGGAGAAGGCGAAGAGGACAGTGGAAGGGGCATGGGAGGCGGCTAAGGATACAACGCAGAAGATAAAGGAGAGGGTTGTAGGGTCAGATGAAGATGAAAGGGATGAAGATGAAAGGGATGAAGATGTTGTGGATGTGAGGAGAAAAAGTGGGAGAAAGTTGGATGATTGA

mRNA sequence

ATGGCAGTAAGCATTTCCTTAGCCAAAAATGTCATCTTCAACCTCTGCAAGGCCTTTCCCAATGCCTCTCCTTCTCCAACTCTCAGATATTCCTCCAAGATTTCAAGGGTCTCTTTCACTACTTCCGCCTCTAAGCAACCATGGAATGGACATGGCACGGATGCAAACCGAGACCCGAGACCGGATTTAGCATACGAAGATGCGAAGGAAAGAGCCAAGGAAGGAGCCTATGACATGAAGGAGAAGGCGAAGGACTATGCCGAGGGGACGAAAGACATGGCGAAGGAAGAAACCAACAAGGCTGCGGAGACAGCGCGGGCTGCGAAGGAGAAGGTGAAAGACTACGCCGACGATGCGAGGGAGAAGGCTAAGGAAGGGACGAACAGGGTAGCGGAGACGGCGGAGGATGCAAGCGAGAGAGCGAAGGAAAGTGCGAAGGGAATGAAGGAGAAGACGGAGGAGATGGCGAAGGAGGGGACGAAGAAGGCGACGGAGACGGTGCAAAATATTGGGGAGAAGGCGAAGAGGACAGTGGAAGGGGCATGGGAGGCGGCTAAGGATACAACGCAGAAGATAAAGGAGAGGGTTGTAGGGTCAGATGAAGATGAAAGGGATGAAGATGAAAGGGATGAAGATGTTGTGGATGTGAGGAGAAAAAGTGGGAGAAAGTTGGATGATTGA

Coding sequence (CDS)

ATGGCAGTAAGCATTTCCTTAGCCAAAAATGTCATCTTCAACCTCTGCAAGGCCTTTCCCAATGCCTCTCCTTCTCCAACTCTCAGATATTCCTCCAAGATTTCAAGGGTCTCTTTCACTACTTCCGCCTCTAAGCAACCATGGAATGGACATGGCACGGATGCAAACCGAGACCCGAGACCGGATTTAGCATACGAAGATGCGAAGGAAAGAGCCAAGGAAGGAGCCTATGACATGAAGGAGAAGGCGAAGGACTATGCCGAGGGGACGAAAGACATGGCGAAGGAAGAAACCAACAAGGCTGCGGAGACAGCGCGGGCTGCGAAGGAGAAGGTGAAAGACTACGCCGACGATGCGAGGGAGAAGGCTAAGGAAGGGACGAACAGGGTAGCGGAGACGGCGGAGGATGCAAGCGAGAGAGCGAAGGAAAGTGCGAAGGGAATGAAGGAGAAGACGGAGGAGATGGCGAAGGAGGGGACGAAGAAGGCGACGGAGACGGTGCAAAATATTGGGGAGAAGGCGAAGAGGACAGTGGAAGGGGCATGGGAGGCGGCTAAGGATACAACGCAGAAGATAAAGGAGAGGGTTGTAGGGTCAGATGAAGATGAAAGGGATGAAGATGAAAGGGATGAAGATGTTGTGGATGTGAGGAGAAAAAGTGGGAGAAAGTTGGATGATTGA

Protein sequence

MAVSISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHGTDANRDPRPDLAYEDAKERAKEGAYDMKEKAKDYAEGTKDMAKEETNKAAETARAAKEKVKDYADDAREKAKEGTNRVAETAEDASERAKESAKGMKEKTEEMAKEGTKKATETVQNIGEKAKRTVEGAWEAAKDTTQKIKERVVGSDEDERDEDERDEDVVDVRRKSGRKLDD

Homology

[Close]

BLAST of Carg14619 vs. NCBI nr
Match: XP_023542553.1 (late embryogenesis abundant protein, group 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 7.6e-34
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHGTDANRDPR 60
          MAVSISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHG DANRDPR
Sbjct: 1  MAVSISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHGADANRDPR 60

Query: 61 PDLAYEDAKERAKEGAY 78
          PDLAYEDAKERAKEGAY
Sbjct: 61 PDLAYEDAKERAKEGAY 77

[Close]

BLAST of Carg14619 vs. NCBI nr
Match: XP_022994469.1 (late embryogenesis abundant protein, group 3-like [Cucurbita maxima])

HSP 1 Score: 147.1 bits (370), Expect = 7.1e-32
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHGTDANRDPR 60
          MAVSISLAKNVIFNLCKAFPNASPSPTLRYS+KISRVSFTTSASKQPWNGHG DANRDPR
Sbjct: 1  MAVSISLAKNVIFNLCKAFPNASPSPTLRYSTKISRVSFTTSASKQPWNGHGVDANRDPR 60

Query: 61 PDLAYEDAKERAKEGA 77
          PDLAYEDAK RAKEGA
Sbjct: 61 PDLAYEDAKGRAKEGA 76

[Close]

BLAST of Carg14619 vs. NCBI nr
Match: XP_022954521.1 (late embryogenesis abundant protein, group 3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHGTDANRDPR 60
          MAVSISLAKNVIFNL KAFPNASPS TLRYSSKISRVSFTTSASKQPWNGHG DANRDPR
Sbjct: 1  MAVSISLAKNVIFNLWKAFPNASPSQTLRYSSKISRVSFTTSASKQPWNGHGADANRDPR 60

Query: 61 PDLAYEDAKERAKEGAY 78
          PDLAYEDAKERAKEGAY
Sbjct: 61 PDLAYEDAKERAKEGAY 77

[Close]

BLAST of Carg14619 vs. NCBI nr
Match: XP_022954522.1 (late embryogenesis abundant protein, group 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHGTDANRDPR 60
          MAVSISLAKNVIFNL KAFPNASPS TLRYSSKISRVSFTTSASKQPWNGHG DANRDPR
Sbjct: 1  MAVSISLAKNVIFNLWKAFPNASPSQTLRYSSKISRVSFTTSASKQPWNGHGADANRDPR 60

Query: 61 PDLAYEDAKERAKEGAY 78
          PDLAYEDAKERAKEGAY
Sbjct: 61 PDLAYEDAKERAKEGAY 77

[Close]

BLAST of Carg14619 vs. NCBI nr
Match: XP_022140082.1 (late embryogenesis abundant protein, group 3 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHGTDANRDPR 60
          MA +ISLAKN+IFNLCK  P  + SP+LR S+KISR+SF TSASK PW  +G +AN DPR
Sbjct: 1  MAATISLAKNLIFNLCKGKPFPNASPSLRSSTKISRISFATSASKHPWGENGGEANSDPR 60

Query: 61 PDLA 65
          PDLA
Sbjct: 61 PDLA 64

[Close]

BLAST of Carg14619 vs. TrEMBL
Match: tr|A0A1S3B5V3|A0A1S3B5V3_CUCME (ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCK---AFPNASPSPTLRYSSKISRVSFTTSASKQP-WNGHGTDAN 60
          MAVSISLAKNVIFNLCK   AF N+SPS  L  S+KIS +SF+TSASK P W+G+G D N
Sbjct: 1  MAVSISLAKNVIFNLCKPKAAFANSSPSLFLNKSTKISSLSFSTSASKHPSWDGNGVDPN 60

Query: 61 RDPRPDLAYED 68
          RD R D AYED
Sbjct: 61 RDSRADYAYED 71

[Close]

BLAST of Carg14619 vs. TrEMBL
Match: tr|A0A0A0LRY0|A0A0A0LRY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCK---AFPNASPSPTL-RYSSKISRVSFTTSASKQP-WNGHGTDA 60
          MA+SISLAKNVIFNLCK   AF N+SPS  L  +S+K+S +SF+TSASK P W+G+G DA
Sbjct: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60

Query: 61 NRDPRP 62
          NRD  P
Sbjct: 61 NRDSSP 66

[Close]

BLAST of Carg14619 vs. TrEMBL
Match: tr|A0A2P6Q469|A0A2P6Q469_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0008841 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.3e-05
Identity = 37/74 (50.00%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 4  SISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHGTDANRDPRPDL 63
          S+SLAKN+IFNL K+FP +  S +LR S KISRV F TSASK     +  + NRD     
Sbjct: 3  SLSLAKNLIFNLSKSFPQSQVSLSLRPSLKISRVCF-TSASKFSEGRNAAEENRDSNSHR 62

Query: 64 AYEDAKERAKEGAY 78
           Y D   R KE  Y
Sbjct: 63 PYADKDWRDKERGY 75

[Close]

BLAST of Carg14619 vs. TrEMBL
Match: tr|A0A218WXM1|A0A218WXM1_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr016841 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 4  SISLAKNVIFNLCKAFPNASPSPTLRYSSKISRVSFTTSASKQPWNGHGT-DANRDPRPD 63
          S+S+AKN IFNL KAFP    S TL  S K+SRV  +TSAS+    G G+ D  RD R D
Sbjct: 3  SLSIAKNAIFNLRKAFPRTPSSITLASSRKVSRVCLSTSASRYSDEGRGSVDPPRDSRAD 62

Query: 64 LAYEDAKERAKE 75
          +A+  +KE   E
Sbjct: 63 MAHR-SKETMNE 73

[Close]

BLAST of Carg14619 vs. TrEMBL
Match: tr|A0A251PFW7|A0A251PFW7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G050100 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 1  MAVSISLAKNVIFNLCKAFPNASPSPTLRYSS-KISRVSFTTSASKQPWNGHGTDANRDP 60
          MAV+ S+AKN+IFN  K+FP +  + + RYSS K+SRV F TSA+K     +  + +RD 
Sbjct: 1  MAVN-SMAKNLIFNPSKSFPQSPSALSPRYSSRKVSRVCFNTSATKYSEGQNAAEDHRDS 60

Query: 61 RPDLAYEDAKER 72
          R D AY+D K R
Sbjct: 61 RADWAYDDKKWR 71

The following BLAST results are available for this feature:

BLAST of Carg14619 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542553.1	7.6e-34	98.70	late embryogenesis abundant protein, group 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022994469.1	7.1e-32	96.05	late embryogenesis abundant protein, group 3-like [Cucurbita maxima]	[more]
XP_022954521.1	1.2e-31	96.10	late embryogenesis abundant protein, group 3 isoform X1 [Cucurbita moschata]	[more]
XP_022954522.1	1.2e-31	96.10	late embryogenesis abundant protein, group 3 isoform X2 [Cucurbita moschata]	[more]
XP_022140082.1	1.5e-13	67.19	late embryogenesis abundant protein, group 3 [Momordica charantia]	[more]

BLAST of Carg14619 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg14619 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14619 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B5V3\|A0A1S3B5V3_CUCME	1.7e-13	69.01	ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 S...	[more]
tr\|A0A0A0LRY0\|A0A0A0LRY0_CUCSA	1.1e-09	65.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1	[more]
tr\|A0A2P6Q469\|A0A2P6Q469_ROSCH	8.3e-05	50.00	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0008841 PE=4...	[more]
tr\|A0A218WXM1\|A0A218WXM1_PUNGR	1.1e-04	50.00	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr016841 PE=4 SV=1	[more]
tr\|A0A251PFW7\|A0A251PFW7_PRUPE	1.9e-04	48.61	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G050100 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14619-RA	Carg14619-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 131..151
None	No IPR available	COILS	Coil	Coil	coord: 91..125
None	No IPR available	GENE3D	G3DSA:1.20.5.1230		coord: 62..206 e-value: 4.4E-7 score: 31.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..161
None	No IPR available	PANTHER	PTHR23241	LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED	coord: 9..219
None	No IPR available	PANTHER	PTHR23241:SF65	LATE EMBRYOGENESIS ABUNDANT PROTEIN LEA FAMILY PROTEIN-RELATED	coord: 9..219
None	No IPR available	SUPERFAMILY	SSF58113	Apolipoprotein A-I	coord: 66..194

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14619	Cla019707	Watermelon (97103) v1	carwmB0141
Carg14619	Csa1G074950	Cucumber (Chinese Long) v2	carcuB0163
Carg14619	MELO3C002615	Melon (DHL92) v3.5.1	carmeB0150
Carg14619	ClCG03G008140	Watermelon (Charleston Gray)	carwcgB0144
Carg14619	CSPI01G12220	Wild cucumber (PI 183967)	carcpiB0169
Carg14619	Cucsa.126790	Cucumber (Gy14) v1	carcgyB0182
Carg14619	CmaCh18G003790	Cucurbita maxima (Rimu)	carcmaB0198
Carg14619	CmoCh18G003590	Cucurbita moschata (Rifu)	carcmoB0204
Carg14619	Lsi02G007640	Bottle gourd (USVL1VR-Ls)	carlsiB135
Carg14619	Cp4.1LG09g08330	Cucurbita pepo (Zucchini)	carcpeB0211
Carg14619	CsGy1G012240	Cucumber (Gy14) v2	carcgybB0161
Carg14619	MELO3C002615.2	Melon (DHL92) v3.6.1	carmedB0153
Carg14619	CsaV3_1G012410	Cucumber (Chinese Long) v3	carcucB0170
Carg14619	Cla97C03G059440	Watermelon (97103) v2	carwmbB0156
Carg14619	BhiUN316G22	Wax gourd	carwgoB0191

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14619	Silver-seed gourd	carcarB171
Carg14619	Silver-seed gourd	carcarB174
Carg14619	Silver-seed gourd	carcarB175
Carg14619	Silver-seed gourd	carcarB176
Carg14619	Silver-seed gourd	carcarB179
Carg14619	Cucumber (Gy14) v2	carcgybB0165
Carg14619	Cucumber (Gy14) v1	carcgyB0180
Carg14619	Cucurbita maxima (Rimu)	carcmaB0199
Carg14619	Cucurbita maxima (Rimu)	carcmaB0194
Carg14619	Cucurbita maxima (Rimu)	carcmaB0196
Carg14619	Cucurbita maxima (Rimu)	carcmaB0201
Carg14619	Cucurbita moschata (Rifu)	carcmoB0200
Carg14619	Cucurbita moschata (Rifu)	carcmoB0202
Carg14619	Cucurbita moschata (Rifu)	carcmoB0206
Carg14619	Cucurbita moschata (Rifu)	carcmoB0209
Carg14619	Cucurbita pepo (Zucchini)	carcpeB0212
Carg14619	Cucurbita pepo (Zucchini)	carcpeB0214
Carg14619	Cucurbita pepo (Zucchini)	carcpeB0215
Carg14619	Cucurbita pepo (Zucchini)	carcpeB0218
Carg14619	Wild cucumber (PI 183967)	carcpiB0172
Carg14619	Wild cucumber (PI 183967)	carcpiB0174
Carg14619	Cucumber (Chinese Long) v2	carcuB0166
Carg14619	Cucumber (Chinese Long) v2	carcuB0168
Carg14619	Cucumber (Chinese Long) v3	carcucB0172
Carg14619	Cucumber (Chinese Long) v3	carcucB0174
Carg14619	Bottle gourd (USVL1VR-Ls)	carlsiB132
Carg14619	Melon (DHL92) v3.5.1	carmeB0153
Carg14619	Melon (DHL92) v3.6.1	carmedB0156
Carg14619	Watermelon (Charleston Gray)	carwcgB0142
Carg14619	Watermelon (Charleston Gray)	carwcgB0143
Carg14619	Watermelon (97103) v1	carwmB0143
Carg14619	Watermelon (97103) v1	carwmB0145
Carg14619	Watermelon (97103) v2	carwmbB0153
Carg14619	Watermelon (97103) v2	carwmbB0155
Carg14619	Wax gourd	carwgoB0189
Carg14619	Wax gourd	carwgoB0195