CsGy1G012240.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012240.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Late embryogenesis abundant protein 2
Location	Chr1 : 7708084 .. 7708968 (+)
Sequence length	801

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTGAAGAAAAGATCGGTGCATGTTGGAAAGAAGAATTTGGGATCAAAACAAAAATGGCTCTCAGCATTTCCTTAGCCAAGAATGTCATCTTCAACCTCTGCAAGCCCAAAGCGGCCTTCGCCAATTCTTCTCCTTCATTATTTCTCAATAATCACTCCACCAAACTTTCATCCCTCTCTTTCTCTACTTCTGCTTCTAAACATCCATCTTGGGTATAATATATTTTAATATGGTCTCGGAGTACATGAACATAATTTTTCTTTTTTGTTAACAAAGGTTTTTCAATTGTTGTATAGGATGGAAATGGCGTGGATGCGAACAGAGACTCGAGTCCGGACTATGCGTATGAAGACGCGAAGGAACAAGCGAAGGAAGAGGCCAAAGAAATGAAGGAACGAGCGAAGGAAGGGGCCAAAGAAATGAAGGAGAAGGCGAAGGACTACTCGCAGGAGACCAAAGAGAAGGTGGCGGAGAAAACAAACAAAGCCTCAGAGACGGCCTCGGCAGCGAAGGAGAAGGTAAAAGACTACGCACGTGATGCCAAAGAGAAGGCGAAGGAAGGAACAAACCGAGCGACAGAGACAGTGGAGGAGGCGACGGAGAGAGCGAAAGAGGGTGCAAAGGGGATGAAGGATAAGACAAAGGAGATGGCGAAGGAAGGGACAAATAAGGCGACGGAGACGATGCAGAATATTGGGGAGAAAGCGAAGCAGACGGTGCAAGGGGCGTGGGAAGCTGCAAAGGATACAACAAATAAGGTGAAGGAGAAGGTAATGGGGACAAATGATGAGGAAGAGGATGAAGAAGGAAGGAGGGGGAAAGTGATGGATGAAGATGTTGTGGATGTTAGGAGAAAAGCTGGGAACAAGTATGATGAATGA

mRNA sequence

TTTTGTGAAGAAAAGATCGGTGCATGTTGGAAAGAAGAATTTGGGATCAAAACAAAAATGGCTCTCAGCATTTCCTTAGCCAAGAATGTCATCTTCAACCTCTGCAAGCCCAAAGCGGCCTTCGCCAATTCTTCTCCTTCATTATTTCTCAATAATCACTCCACCAAACTTTCATCCCTCTCTTTCTCTACTTCTGCTTCTAAACATCCATCTTGGGATGGAAATGGCGTGGATGCGAACAGAGACTCGAGTCCGGACTATGCGTATGAAGACGCGAAGGAACAAGCGAAGGAAGAGGCCAAAGAAATGAAGGAACGAGCGAAGGAAGGGGCCAAAGAAATGAAGGAGAAGGCGAAGGACTACTCGCAGGAGACCAAAGAGAAGGTGGCGGAGAAAACAAACAAAGCCTCAGAGACGGCCTCGGCAGCGAAGGAGAAGGTAAAAGACTACGCACGTGATGCCAAAGAGAAGGCGAAGGAAGGAACAAACCGAGCGACAGAGACAGTGGAGGAGGCGACGGAGAGAGCGAAAGAGGGTGCAAAGGGGATGAAGGATAAGACAAAGGAGATGGCGAAGGAAGGGACAAATAAGGCGACGGAGACGATGCAGAATATTGGGGAGAAAGCGAAGCAGACGGTGCAAGGGGCGTGGGAAGCTGCAAAGGATACAACAAATAAGGTGAAGGAGAAGGTAATGGGGACAAATGATGAGGAAGAGGATGAAGAAGGAAGGAGGGGGAAAGTGATGGATGAAGATGTTGTGGATGTTAGGAGAAAAGCTGGGAACAAGTATGATGAATGA

Coding sequence (CDS)

ATGGCTCTCAGCATTTCCTTAGCCAAGAATGTCATCTTCAACCTCTGCAAGCCCAAAGCGGCCTTCGCCAATTCTTCTCCTTCATTATTTCTCAATAATCACTCCACCAAACTTTCATCCCTCTCTTTCTCTACTTCTGCTTCTAAACATCCATCTTGGGATGGAAATGGCGTGGATGCGAACAGAGACTCGAGTCCGGACTATGCGTATGAAGACGCGAAGGAACAAGCGAAGGAAGAGGCCAAAGAAATGAAGGAACGAGCGAAGGAAGGGGCCAAAGAAATGAAGGAGAAGGCGAAGGACTACTCGCAGGAGACCAAAGAGAAGGTGGCGGAGAAAACAAACAAAGCCTCAGAGACGGCCTCGGCAGCGAAGGAGAAGGTAAAAGACTACGCACGTGATGCCAAAGAGAAGGCGAAGGAAGGAACAAACCGAGCGACAGAGACAGTGGAGGAGGCGACGGAGAGAGCGAAAGAGGGTGCAAAGGGGATGAAGGATAAGACAAAGGAGATGGCGAAGGAAGGGACAAATAAGGCGACGGAGACGATGCAGAATATTGGGGAGAAAGCGAAGCAGACGGTGCAAGGGGCGTGGGAAGCTGCAAAGGATACAACAAATAAGGTGAAGGAGAAGGTAATGGGGACAAATGATGAGGAAGAGGATGAAGAAGGAAGGAGGGGGAAAGTGATGGATGAAGATGTTGTGGATGTTAGGAGAAAAGCTGGGAACAAGTATGATGAATGA

Protein sequence

MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDANRDSSPDYAYEDAKEQAKEEAKEMKERAKEGAKEMKEKAKDYSQETKEKVAEKTNKASETASAAKEKVKDYARDAKEKAKEGTNRATETVEEATERAKEGAKGMKDKTKEMAKEGTNKATETMQNIGEKAKQTVQGAWEAAKDTTNKVKEKVMGTNDEEEDEEGRRGKVMDEDVVDVRRKAGNKYDE

Homology

[Close]

BLAST of CsGy1G012240.1 vs. NCBI nr
Match: KGN64690.1 (hypothetical protein Csa_1G074950 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
           MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA
Sbjct: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60

Query: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEEEDEEGRRGKVMDEDVVDVRRK 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  N+EEEDEEGRRGKVMDEDVVDVRRK
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTNNEEEDEEGRRGKVMDEDVVDVRRK 240

Query: 241 AGNKYDE 248
           AGNKYDE
Sbjct: 241 AGNKYDE 247

[Close]

BLAST of CsGy1G012240.1 vs. NCBI nr
Match: XP_004146655.2 (PREDICTED: late embryogenesis abundant protein, group 3-like [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
           MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA
Sbjct: 29  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 88

Query: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 89  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 148

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 149 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 208

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEEEDEEGRRGKVMDEDVVDVRRK 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  N+EEEDEEGRRGKVMDEDVVDVRRK
Sbjct: 209 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTNNEEEDEEGRRGKVMDEDVVDVRRK 268

Query: 241 AGNKYDE 248
           AGNKYDE
Sbjct: 269 AGNKYDE 275

[Close]

BLAST of CsGy1G012240.1 vs. NCBI nr
Match: XP_008442715.1 (PREDICTED: ABA-inducible protein PHV A1-like [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
          MA+SISLAKNVIFNLCKPKAAFANSSPSLFLN  STK+SSLSFSTSASKHPSWDGNGVD 
Sbjct: 1  MAVSISLAKNVIFNLCKPKAAFANSSPSLFLNK-STKISSLSFSTSASKHPSWDGNGVDP 60

Query: 61 NRDS 65
          NRDS
Sbjct: 61 NRDS 63

[Close]

BLAST of CsGy1G012240.1 vs. NCBI nr
Match: XP_022994469.1 (late embryogenesis abundant protein, group 3-like [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
          MA+SISLAKNVIFNLCK   AF N+SPS  L  +STK+S +SF+TSASK P W+G+GVDA
Sbjct: 1  MAVSISLAKNVIFNLCK---AFPNASPSPTL-RYSTKISRVSFTTSASKQP-WNGHGVDA 60

Query: 61 NRDSSP 67
          NRD  P
Sbjct: 61 NRDPRP 61

[Close]

BLAST of CsGy1G012240.1 vs. NCBI nr
Match: XP_023542553.1 (late embryogenesis abundant protein, group 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 9.2e-09
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
          MA+SISLAKNVIFNLCK   AF N+SPS  L  +S+K+S +SF+TSASK P W+G+G DA
Sbjct: 1  MAVSISLAKNVIFNLCK---AFPNASPSPTL-RYSSKISRVSFTTSASKQP-WNGHGADA 60

Query: 61 NRDSSP 67
          NRD  P
Sbjct: 61 NRDPRP 61

[Close]

BLAST of CsGy1G012240.1 vs. TrEMBL
Match: tr|A0A0A0LRY0|A0A0A0LRY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
           MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA
Sbjct: 1   MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60

Query: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDEEEDEEGRRGKVMDEDVVDVRRK 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  N+EEEDEEGRRGKVMDEDVVDVRRK
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTNNEEEDEEGRRGKVMDEDVVDVRRK 240

Query: 241 AGNKYDE 248
           AGNKYDE
Sbjct: 241 AGNKYDE 247

[Close]

BLAST of CsGy1G012240.1 vs. TrEMBL
Match: tr|A0A1S3B5V3|A0A1S3B5V3_CUCME (ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MALSISLAKNVIFNLCKPKAAFANSSPSLFLNNHSTKLSSLSFSTSASKHPSWDGNGVDA 60
          MA+SISLAKNVIFNLCKPKAAFANSSPSLFLN  STK+SSLSFSTSASKHPSWDGNGVD 
Sbjct: 1  MAVSISLAKNVIFNLCKPKAAFANSSPSLFLNK-STKISSLSFSTSASKHPSWDGNGVDP 60

Query: 61 NRDS 65
          NRDS
Sbjct: 61 NRDS 63

The following BLAST results are available for this feature:

BLAST of CsGy1G012240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64690.1	2.8e-26	98.79	hypothetical protein Csa_1G074950 [Cucumis sativus]	[more]
XP_004146655.2	2.8e-26	98.79	PREDICTED: late embryogenesis abundant protein, group 3-like [Cucumis sativus]	[more]
XP_008442715.1	1.0e-20	92.19	PREDICTED: ABA-inducible protein PHV A1-like [Cucumis melo]	[more]
XP_022994469.1	1.1e-09	68.18	late embryogenesis abundant protein, group 3-like [Cucurbita maxima]	[more]
XP_023542553.1	9.2e-09	65.15	late embryogenesis abundant protein, group 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G012240.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G012240.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G012240.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRY0\|A0A0A0LRY0_CUCSA	1.9e-26	98.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G074950 PE=4 SV=1	[more]
tr\|A0A1S3B5V3\|A0A1S3B5V3_CUCME	6.9e-21	92.19	ABA-inducible protein PHV A1-like OS=Cucumis melo OX=3656 GN=LOC103486504 PE=4 S...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G012240	CsGy1G012240	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G012240.1.five_prime_UTR.1	CsGy1G012240.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G012240.1.exon.1	CsGy1G012240.1.exon.1	exon
CsGy1G012240.1.exon.2	CsGy1G012240.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G012240.1.CDS.1	CsGy1G012240.1.CDS.1	CDS
CsGy1G012240.1.CDS.2	CsGy1G012240.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G012240.1	CsGy1G012240.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..112
None	No IPR available	COILS	Coil	Coil	coord: 121..156
None	No IPR available	GENE3D	G3DSA:1.10.287.700		coord: 148..226 e-value: 4.2E-8 score: 35.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..247
None	No IPR available	PANTHER	PTHR23241	LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED	coord: 25..239
None	No IPR available	PANTHER	PTHR23241:SF65	LATE EMBRYOGENESIS ABUNDANT PROTEIN LEA FAMILY PROTEIN-RELATED	coord: 25..239
None	No IPR available	SUPERFAMILY	SSF58113	Apolipoprotein A-I	coord: 71..211