CsGy1G004910 (gene) Cucumber (Gy14) v2

NameCsGy1G004910
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 3315536 .. 3315910 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTAATTCAAAAAATTGTAACCGAAAGCCAATGTAATTTCCATTTCAGGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

mRNA sequence

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

Coding sequence (CDS)

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

Protein sequence

MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVIIRKPPFRRPPPQSESRTREIHHSKFKKDNIEMEE
BLAST of CsGy1G004910 vs. NCBI nr
Match: KGN63952.1 (hypothetical protein Csa_1G031760 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 3.8e-32
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0

Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFXXXXXQSESRT 78
          IRKPPF     QSESRT
Sbjct: 61 IRKPPFRRPPPQSESRT 77

BLAST of CsGy1G004910 vs. TrEMBL
Match: tr|A0A0A0LT58|A0A0A0LT58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031760 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-32
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0

Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFXXXXXQSESRT 78
          IRKPPF     QSESRT
Sbjct: 61 IRKPPFRRPPPQSESRT 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN63952.13.8e-3293.51hypothetical protein Csa_1G031760 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LT58|A0A0A0LT58_CUCSA2.5e-3293.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031760 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G004910.1CsGy1G004910.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..94

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G004910Csa1G031760Cucumber (Chinese Long) v2cgybcuB001
CsGy1G004910CSPI01G05130Wild cucumber (PI 183967)cgybcpiB001
CsGy1G004910CsaV3_1G005030Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None