CsGy1G004910 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G004910
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 3315536 .. 3315910 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTAATTCAAAAAATTGTAACCGAAAGCCAATGTAATTTCCATTTCAGGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

mRNA sequence

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

Coding sequence (CDS)

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

Protein sequence

MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVIIRKPPFRRPPPQSESRTREIHHSKFKKDNIEMEE

Homology

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BLAST of CsGy1G004910 vs. NCBI nr
Match: KGN63952.1 (hypothetical protein Csa_1G031760 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 3.8e-32
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFXXXXXQSESRT 78
          IRKPPF     QSESRT
Sbjct: 61 IRKPPFRRPPPQSESRT 77

[Close]

BLAST of CsGy1G004910 vs. TrEMBL
Match: tr|A0A0A0LT58|A0A0A0LT58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031760 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-32
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFXXXXXQSESRT 78
          IRKPPF     QSESRT
Sbjct: 61 IRKPPFRRPPPQSESRT 77

The following BLAST results are available for this feature:

BLAST of CsGy1G004910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63952.1	3.8e-32	93.51	hypothetical protein Csa_1G031760 [Cucumis sativus]	[more]

BLAST of CsGy1G004910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G004910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G004910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT58\|A0A0A0LT58_CUCSA	2.5e-32	93.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G004910.1	CsGy1G004910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G004910	Csa1G031760	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G004910	CSPI01G05130	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G004910	CsaV3_1G005030	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G004910	Cucurbita maxima (Rimu)	cgybcmaB064
CsGy1G004910	Cucurbita maxima (Rimu)	cgybcmaB105
CsGy1G004910	Cucurbita moschata (Rifu)	cgybcmoB060
CsGy1G004910	Cucurbita moschata (Rifu)	cgybcmoB099
CsGy1G004910	Cucurbita pepo (Zucchini)	cgybcpeB081
CsGy1G004910	Cucurbita pepo (Zucchini)	cgybcpeB098
CsGy1G004910	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G004910	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G004910	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G004910	Watermelon (Charleston Gray)	cgybwcgB053
CsGy1G004910	Watermelon (97103) v1	cgybwmB064
CsGy1G004910	Silver-seed gourd	carcgybB0395
CsGy1G004910	Silver-seed gourd	carcgybB0526
CsGy1G004910	Watermelon (97103) v2	cgybwmbB053
CsGy1G004910	Wax gourd	cgybwgoB031