CSPI01G05130 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G05130
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 3333390 .. 3333629 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAA

mRNA sequence

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAA

Coding sequence (CDS)

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAA
Homology
[Close]
BLAST of CSPI01G05130 vs. TrEMBL
Match: A0A0A0LT58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031760 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.5e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFRRPPPQSESRTSP 80
          IRKPPFRRPPPQSESRTSP
Sbjct: 61 IRKPPFRRPPPQSESRTSP 79

[Close]
BLAST of CSPI01G05130 vs. NCBI nr
Match: gi|700208856|gb|KGN63952.1| (hypothetical protein Csa_1G031760 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.1e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFRRPPPQSESRTSP 80
          IRKPPFRRPPPQSESRTSP
Sbjct: 61 IRKPPFRRPPPQSESRTSP 79

The following BLAST results are available for this feature:
BLAST of CSPI01G05130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G05130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT58_CUCSA3.5e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031760 PE=4 SV=1[more]
BLAST of CSPI01G05130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G05130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208856|gb|KGN63952.1|5.1e-37100.00hypothetical protein Csa_1G031760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G05130.1CSPI01G05130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G05130Csa1G031760Cucumber (Chinese Long) v2cpicuB000
CSPI01G05130CsaV3_1G005030Cucumber (Chinese Long) v3cpicucB001
CSPI01G05130CsGy1G004910Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G05130Silver-seed gourdcarcpiB0421
CSPI01G05130Silver-seed gourdcarcpiB0556
CSPI01G05130Watermelon (97103) v2cpiwmbB055
CSPI01G05130Wax gourdcpiwgoB034
CSPI01G05130Cucumber (Gy14) v1cgycpiB137
CSPI01G05130Cucurbita maxima (Rimu)cmacpiB208
CSPI01G05130Cucurbita maxima (Rimu)cmacpiB431
CSPI01G05130Cucurbita moschata (Rifu)cmocpiB195
CSPI01G05130Cucurbita moschata (Rifu)cmocpiB421
CSPI01G05130Melon (DHL92) v3.5.1cpimeB024
CSPI01G05130Watermelon (Charleston Gray)cpiwcgB059
CSPI01G05130Watermelon (97103) v1cpiwmB066
CSPI01G05130Cucurbita pepo (Zucchini)cpecpiB519
CSPI01G05130Cucurbita pepo (Zucchini)cpecpiB535
CSPI01G05130Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G05130Melon (DHL92) v3.6.1cpimedB023