Csa1G031760 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G031760
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3323201 .. 3323440 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAA

mRNA sequence

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAA

Coding sequence (CDS)

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAA

Protein sequence

MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVIIRKPPFRRPPPQSESRTSP*
Homology
[Close]
BLAST of Csa1G031760 vs. TrEMBL
Match: A0A0A0LT58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031760 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.2e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFRRPPPQSESRTSP 80
          IRKPPFRRPPPQSESRTSP
Sbjct: 61 IRKPPFRRPPPQSESRTSP 79

[Close]
BLAST of Csa1G031760 vs. NCBI nr
Match: gi|700208856|gb|KGN63952.1| (hypothetical protein Csa_1G031760 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 6.0e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFRRPPPQSESRTSP 80
          IRKPPFRRPPPQSESRTSP
Sbjct: 61 IRKPPFRRPPPQSESRTSP 79

The following BLAST results are available for this feature:
BLAST of Csa1G031760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT58_CUCSA4.2e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031760 PE=4 SV=1[more]
BLAST of Csa1G031760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208856|gb|KGN63952.1|6.0e-38100.00hypothetical protein Csa_1G031760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G031760.1Csa1G031760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G031760CSPI01G05130Wild cucumber (PI 183967)cpicuB000
Csa1G031760CsGy1G004910Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G031760Silver-seed gourdcarcuB0417
Csa1G031760Silver-seed gourdcarcuB0549
Csa1G031760Watermelon (97103) v2cuwmbB054
Csa1G031760Wax gourdcuwgoB034
Csa1G031760Cucumber (Gy14) v1cgycuB137
Csa1G031760Cucurbita maxima (Rimu)cmacuB206
Csa1G031760Cucurbita maxima (Rimu)cmacuB428
Csa1G031760Cucurbita moschata (Rifu)cmocuB191
Csa1G031760Cucurbita moschata (Rifu)cmocuB417
Csa1G031760Melon (DHL92) v3.5.1cumeB027
Csa1G031760Watermelon (Charleston Gray)cuwcgB057
Csa1G031760Watermelon (97103) v1cuwmB062
Csa1G031760Cucurbita pepo (Zucchini)cpecuB517
Csa1G031760Cucurbita pepo (Zucchini)cpecuB533
Csa1G031760Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G031760Melon (DHL92) v3.6.1cumedB022