CsGy1G004910.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G004910.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 3315536 .. 3315910 (+)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGTACGTCCCCCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTAATTCAAAAAATTGTAACCGAAAGCCAATGTAATTTCCATTTCAGGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

mRNA sequence

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

Coding sequence (CDS)

ATGCACAAATACCCAAATCTCATTACTCAATATGCGGAAACGGTTACGGCGGAGCTGAAGAAATGGGAAAGATTGGATGAGGGATTCGATTTGGGAGAGAAATCTTGGGGCGTAATTATTTTTAAAGAGATCGTGGAACGAAAAAAGGCAAATAAAAAGGCGAAGTCAGCGCCGGTGATAATCCGGAAGCCACCATTCCGCCGCCCTCCGCCACAGAGTGAGTCCCGCACCAGGGAAATCCATCATTCAAAATTCAAAAAAGATAATATTGAAATGGAAGAATAA

Protein sequence

MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVIIRKPPFRRPPPQSESRTREIHHSKFKKDNIEMEE

Homology

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BLAST of CsGy1G004910.1 vs. NCBI nr
Match: KGN63952.1 (hypothetical protein Csa_1G031760 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 3.8e-32
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFXXXXXQSESRT 78
          IRKPPF     QSESRT
Sbjct: 61 IRKPPFRRPPPQSESRT 77

[Close]

BLAST of CsGy1G004910.1 vs. TrEMBL
Match: tr|A0A0A0LT58|A0A0A0LT58_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031760 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-32
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60
          MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI
Sbjct: 1  MHKYPNLITQYAETVTAELKKWERLDEGFDLGEKSWGVIIFKEIVERKKANKKAKSAPVI 60

Query: 61 IRKPPFXXXXXQSESRT 78
          IRKPPF     QSESRT
Sbjct: 61 IRKPPFRRPPPQSESRT 77

The following BLAST results are available for this feature:

BLAST of CsGy1G004910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63952.1	3.8e-32	93.51	hypothetical protein Csa_1G031760 [Cucumis sativus]	[more]

BLAST of CsGy1G004910.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G004910.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G004910.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT58\|A0A0A0LT58_CUCSA	2.5e-32	93.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G004910	CsGy1G004910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G004910.1.exon.1	CsGy1G004910.1.exon.1	exon
CsGy1G004910.1.exon.2	CsGy1G004910.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G004910.1.CDS.1	CsGy1G004910.1.CDS.1	CDS
CsGy1G004910.1.CDS.2	CsGy1G004910.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G004910.1	CsGy1G004910.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..94