CsGy1G003390 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G003390
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionacyl-activating enzyme 17
LocationChr1 : 2124988 .. 2125636 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGACATTTATACTTCGAAGCTCCAATCTCCTTTTCGCTTTGGTATTCGCGAACGCATTTCCAACAAAGCGACTTGATTGTGAAGGTGTTCAAATCCCTACATTAGAAATTTGTAGGACCAAGAAGAACTTTGCACTTCAGTTGCCGATCGATTCCAACACCTAAATCTAGTGGAAATAAAGGTGGTCAATCTTAAAATCTTAACTTAATCCGGTAATGATTCGTTAAATTTCATGGAATTAGACTGGCAATTTCTTTGAGTGGGTTTTTTACATGTATTGGAAACCTTTTGTACAATCAAACTTCCATTTCAATGGTGTCTAAAGCAAAGTCTAGCTTAATCGTTCATCGATCTTTTGAATAATTAGTGTTGGTGAGTTAACTTAATTCCATGTTCGATGTGCATGCATCGTCATAGGGTTCACCGTGTGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

mRNA sequence

ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGACATTTATACTTCGAAGCTCCAATCTCCTTTTCGCTTTGGGTTCACCGTGTGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

Coding sequence (CDS)

ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGACATTTATACTTCGAAGCTCCAATCTCCTTTTCGCTTTGGGTTCACCGTGTGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

Protein sequence

MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRHLYFEAPISFSLWVHRVVPYPSLPRTARDEVMRRILRRQLAVER
Homology
[Close]
BLAST of CsGy1G003390 vs. NCBI nr
Match: KGN63782.1 (hypothetical protein Csa_1G015750 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 3.3e-41
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 0 

Query: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRHLYFEAPISFSLWV 60
          MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSR LYFEAPI FSLWV
Sbjct: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60

Query: 61 HRVVPYPSLPRTARDEVMRRILRRQLAVER 91
          HR VPYPSLPRTARDEVMRRILRRQLAVER
Sbjct: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 90

[Close]
BLAST of CsGy1G003390 vs. NCBI nr
Match: XP_022135246.1 (probable acyl-activating enzyme 17, peroxisomal [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 60  VHRVVPYPSLPRTARDEVMRRILRRQLAVER 91
           VHRVVPYPSLPRTA ++VMRRILR+QLAVER
Sbjct: 691 VHRVVPYPSLPRTATNKVMRRILRQQLAVER 721

[Close]
BLAST of CsGy1G003390 vs. NCBI nr
Match: XP_022135245.1 (probable acyl-activating enzyme 17, peroxisomal [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 4.2e-04
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 60  VHRVVPYPSLPRTARDEVMRRILRRQLAVE 90
           VHRVVPYPSLPRTA ++VMRR+LR+QLA+E
Sbjct: 691 VHRVVPYPSLPRTATNKVMRRVLRQQLAIE 720

[Close]
BLAST of CsGy1G003390 vs. NCBI nr
Match: XP_022973202.1 (probable acyl-activating enzyme 17, peroxisomal [Cucurbita maxima])

HSP 1 Score: 52.8 bits (125), Expect = 7.2e-04
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 60  VHRVVPYPSLPRTARDEVMRRILRRQLAVE 90
           VHRVVPYPSLPRTA ++VMRRILR+QLA E
Sbjct: 691 VHRVVPYPSLPRTATNKVMRRILRQQLAAE 720

[Close]
BLAST of CsGy1G003390 vs. NCBI nr
Match: XP_023529559.1 (probable acyl-activating enzyme 17, peroxisomal [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.8 bits (125), Expect = 7.2e-04
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 60  VHRVVPYPSLPRTARDEVMRRILRRQLAVE 90
           VHRVVPYPSLPRTA ++VMRRILR+QLA E
Sbjct: 691 VHRVVPYPSLPRTATNKVMRRILRQQLAAE 720

[Close]
BLAST of CsGy1G003390 vs. TrEMBL
Match: tr|A0A0A0LSK7|A0A0A0LSK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015750 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-41
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 0 

Query: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRHLYFEAPISFSLWV 60
          MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSR LYFEAPI FSLWV
Sbjct: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60

Query: 61 HRVVPYPSLPRTARDEVMRRILRRQLAVER 91
          HR VPYPSLPRTARDEVMRRILRRQLAVER
Sbjct: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 90

The following BLAST results are available for this feature:
BLAST of CsGy1G003390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63782.13.3e-4196.67hypothetical protein Csa_1G015750 [Cucumis sativus][more]
XP_022135246.11.1e-0487.10probable acyl-activating enzyme 17, peroxisomal [Momordica charantia][more]
XP_022135245.14.2e-0480.00probable acyl-activating enzyme 17, peroxisomal [Momordica charantia][more]
XP_022973202.17.2e-0483.33probable acyl-activating enzyme 17, peroxisomal [Cucurbita maxima][more]
XP_023529559.17.2e-0483.33probable acyl-activating enzyme 17, peroxisomal [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy1G003390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G003390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G003390 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSK7|A0A0A0LSK7_CUCSA2.2e-4196.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015750 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G003390.1CsGy1G003390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G003390Csa1G015750Cucumber (Chinese Long) v2cgybcuB001
CsGy1G003390CSPI01G03410Wild cucumber (PI 183967)cgybcpiB001
CsGy1G003390CsaV3_1G003440Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G003390Watermelon (97103) v2cgybwmbB054
CsGy1G003390Watermelon (97103) v2cgybwmbB077
CsGy1G003390Wax gourdcgybwgoB109
CsGy1G003390Cucumber (Gy14) v2cgybcgybB002
CsGy1G003390Cucurbita maxima (Rimu)cgybcmaB018
CsGy1G003390Cucurbita maxima (Rimu)cgybcmaB029
CsGy1G003390Cucurbita maxima (Rimu)cgybcmaB051
CsGy1G003390Cucurbita maxima (Rimu)cgybcmaB077
CsGy1G003390Cucurbita maxima (Rimu)cgybcmaB088
CsGy1G003390Cucurbita moschata (Rifu)cgybcmoB017
CsGy1G003390Cucurbita moschata (Rifu)cgybcmoB028
CsGy1G003390Cucurbita moschata (Rifu)cgybcmoB045
CsGy1G003390Cucurbita moschata (Rifu)cgybcmoB088
CsGy1G003390Cucurbita pepo (Zucchini)cgybcpeB020
CsGy1G003390Cucurbita pepo (Zucchini)cgybcpeB041
CsGy1G003390Cucurbita pepo (Zucchini)cgybcpeB063
CsGy1G003390Cucurbita pepo (Zucchini)cgybcpeB073
CsGy1G003390Cucurbita pepo (Zucchini)cgybcpeB096
CsGy1G003390Cucurbita pepo (Zucchini)cgybcpeB116
CsGy1G003390Cucumber (Chinese Long) v2cgybcuB004
CsGy1G003390Bottle gourd (USVL1VR-Ls)cgyblsiB021
CsGy1G003390Bottle gourd (USVL1VR-Ls)cgyblsiB068
CsGy1G003390Melon (DHL92) v3.5.1cgybmeB006
CsGy1G003390Melon (DHL92) v3.5.1cgybmeB050
CsGy1G003390Melon (DHL92) v3.6.1cgybmedB044
CsGy1G003390Watermelon (Charleston Gray)cgybwcgB054
CsGy1G003390Watermelon (Charleston Gray)cgybwcgB079
CsGy1G003390Watermelon (97103) v1cgybwmB065
CsGy1G003390Watermelon (97103) v1cgybwmB095
CsGy1G003390Wild cucumber (PI 183967)cgybcpiB003
CsGy1G003390Silver-seed gourdcarcgybB0394
CsGy1G003390Silver-seed gourdcarcgybB0468
CsGy1G003390Silver-seed gourdcarcgybB0519
CsGy1G003390Silver-seed gourdcarcgybB0593
CsGy1G003390Silver-seed gourdcarcgybB0594
CsGy1G003390Cucumber (Chinese Long) v3cgybcucB004