CsaV3_1G003440 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G003440
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 2152486 .. 2153134 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGAGATTTATACTTCGAAGCTCCAATCTTCTTTTCGCTTTGGTATTCGCGAATGCATTTCCAACAAAGCGACTTGATTGTGAAGGTGTTCAAATCCCTACATTAGAAATTTGTAGGACCAAGAAGAACTTTGCACTTCAGTTGCCGATCGATTCCAACACCTAAATCTAGTGGAAATAAAGGTGGTCAATCTTAAAATCTTAACTTAATCCGGTAATGATTCGTTAAATTTCATGGAATTAGACTTGCAATTTCTTTGAGTGGGTTTTTTACATGTATTGGAAACCTTTTGTACAATCAAACTTCCATTTCAATGGTGTCTAAAGCAAAGTCTTGCTTAATCGTTCATCGATCTTTTGAATAATTAGTGTTGGTGAGTTAACTTAATTCCATGTTCGATGTGCATGCATCGTCATAGGGTTCACCGTGGGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

mRNA sequence

ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGAGATTTATACTTCGAAGCTCCAATCTTCTTTTCGCTTTGGGTTCACCGTGGGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

Coding sequence (CDS)

ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGAGATTTATACTTCGAAGCTCCAATCTTCTTTTCGCTTTGGGTTCACCGTGGGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

Protein sequence

MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWVHRGVPYPSLPRTARDEVMRRILRRQLAVER
Homology
[Close]
BLAST of CsaV3_1G003440 vs. NCBI nr
Match: KGN63782.1 (hypothetical protein Csa_1G015750 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.5e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60
          MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV
Sbjct: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60

Query: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 91
          HRGVPYPSLPRTARDEVMRRILRRQLAVER
Sbjct: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 90

[Close]
BLAST of CsaV3_1G003440 vs. NCBI nr
Match: XP_022135246.1 (probable acyl-activating enzyme 17, peroxisomal [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 60  VHRGVPYPSLPRTARDEVMRRILRRQLAVER 91
           VHR VPYPSLPRTA ++VMRRILR+QLAVER
Sbjct: 691 VHRVVPYPSLPRTATNKVMRRILRQQLAVER 721

[Close]
BLAST of CsaV3_1G003440 vs. TrEMBL
Match: tr|A0A0A0LSK7|A0A0A0LSK7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015750 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.6e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60
          MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV
Sbjct: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60

Query: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 91
          HRGVPYPSLPRTARDEVMRRILRRQLAVER
Sbjct: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 90

The following BLAST results are available for this feature:
BLAST of CsaV3_1G003440 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63782.11.5e-44100.00hypothetical protein Csa_1G015750 [Cucumis sativus][more]
XP_022135246.12.5e-0483.87probable acyl-activating enzyme 17, peroxisomal [Momordica charantia][more]
BLAST of CsaV3_1G003440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003440 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSK7|A0A0A0LSK7_CUCSA9.6e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015750 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G003440.1CsaV3_1G003440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G003440CSPI01G03410Wild cucumber (PI 183967)cpicucB001
CsaV3_1G003440CsGy1G003390Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G003440Silver-seed gourdcarcucB0628
CsaV3_1G003440Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G003440Silver-seed gourdcarcucB0419
CsaV3_1G003440Silver-seed gourdcarcucB0494
CsaV3_1G003440Silver-seed gourdcarcucB0549
CsaV3_1G003440Silver-seed gourdcarcucB0629
CsaV3_1G003440Cucumber (Gy14) v2cgybcucB003
CsaV3_1G003440Cucumber (Gy14) v1cgycucB314
CsaV3_1G003440Cucumber (Gy14) v1cgycucB436
CsaV3_1G003440Cucurbita maxima (Rimu)cmacucB0071
CsaV3_1G003440Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G003440Cucurbita maxima (Rimu)cmacucB0122
CsaV3_1G003440Cucurbita maxima (Rimu)cmacucB0252
CsaV3_1G003440Cucurbita maxima (Rimu)cmacucB0466
CsaV3_1G003440Cucurbita moschata (Rifu)cmocucB0057
CsaV3_1G003440Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G003440Cucurbita moschata (Rifu)cmocucB0108
CsaV3_1G003440Cucurbita moschata (Rifu)cmocucB0238
CsaV3_1G003440Cucurbita moschata (Rifu)cmocucB0463
CsaV3_1G003440Cucurbita pepo (Zucchini)cpecucB0033
CsaV3_1G003440Cucurbita pepo (Zucchini)cpecucB0431
CsaV3_1G003440Cucurbita pepo (Zucchini)cpecucB0474
CsaV3_1G003440Cucurbita pepo (Zucchini)cpecucB0627
CsaV3_1G003440Cucurbita pepo (Zucchini)cpecucB0803
CsaV3_1G003440Wild cucumber (PI 183967)cpicucB002
CsaV3_1G003440Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G003440Bottle gourd (USVL1VR-Ls)cuclsiB071
CsaV3_1G003440Bottle gourd (USVL1VR-Ls)cuclsiB082
CsaV3_1G003440Melon (DHL92) v3.5.1cucmeB006
CsaV3_1G003440Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G003440Melon (DHL92) v3.5.1cucmeB055
CsaV3_1G003440Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G003440Melon (DHL92) v3.6.1cucmedB051
CsaV3_1G003440Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G003440Watermelon (Charleston Gray)cucwcgB077
CsaV3_1G003440Watermelon (Charleston Gray)cucwcgB089
CsaV3_1G003440Watermelon (97103) v1cucwmB071
CsaV3_1G003440Watermelon (97103) v1cucwmB106
CsaV3_1G003440Watermelon (97103) v2cucwmbB055
CsaV3_1G003440Watermelon (97103) v2cucwmbB077
CsaV3_1G003440Wax gourdcucwgoB120