CSPI01G03410 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G03410
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 2139920 .. 2140568 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGAGATTTATACTTCGAAGCTCCAATCTTCTTTTCGCTTTGGTATTCGCGAATGCATTTCCAACAAAGCGACTTGATTGTGAAGGTGTTCAAATCCCTACATTAGAAATTTGTAGGACCAAGAAGAACTTTGCACTTCAGTTGCCGATCGATTCCAACACCTAAATCTAGTGGAAATAAAGGTGGTCAATCTTAAAATCTTAACTTAATCCGGTAATGATTCGTTAAATTTCATGGAATTAGACTTGCAATTTCTTTGAGTGGGTTTTTTACATGTATTGGAAACCTTTTGTACAATCAAACTTCCATTTCAATGGTGTCTAAAGCAAAGTCTAGCTTAATCGTTCATCGATCTTTTGAATAATTAGTGTTGGTGAGTTAACTTAATTCCATGTTCGATGTGCATGCATCGTCATAGGGTTCACCGTGTGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

mRNA sequence

ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGAGATTTATACTTCGAAGCTCCAATCTTCTTTTCGCTTTGGGTTCACCGTGTGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

Coding sequence (CDS)

ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGAGATTTATACTTCGAAGCTCCAATCTTCTTTTCGCTTTGGGTTCACCGTGTGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG
Homology
[Close]
BLAST of CSPI01G03410 vs. TrEMBL
Match: A0A0A0LSK7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015750 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.8e-44
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1 

Query: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60
          MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV
Sbjct: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60

Query: 61 HRVVPYPSLPRTARDEVMRRILRRQLAVER 91
          HR VPYPSLPRTARDEVMRRILRRQLAVER
Sbjct: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 90

[Close]
BLAST of CSPI01G03410 vs. NCBI nr
Match: gi|700208686|gb|KGN63782.1| (hypothetical protein Csa_1G015750 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-43
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 1 

Query: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60
          MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV
Sbjct: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60

Query: 61 HRVVPYPSLPRTARDEVMRRILRRQLAVER 91
          HR VPYPSLPRTARDEVMRRILRRQLAVER
Sbjct: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 90

The following BLAST results are available for this feature:
BLAST of CSPI01G03410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G03410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSK7_CUCSA9.8e-4498.89Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015750 PE=4 SV=1[more]
BLAST of CSPI01G03410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G03410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208686|gb|KGN63782.1|1.4e-4398.89hypothetical protein Csa_1G015750 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G03410.1CSPI01G03410.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G03410Csa1G015750Cucumber (Chinese Long) v2cpicuB000
CSPI01G03410CsaV3_1G003440Cucumber (Chinese Long) v3cpicucB001
CSPI01G03410CsGy1G003390Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G03410Cucumber (Gy14) v1cgycpiB310
CSPI01G03410Cucumber (Gy14) v1cgycpiB428
CSPI01G03410Cucurbita maxima (Rimu)cmacpiB062
CSPI01G03410Cucurbita maxima (Rimu)cmacpiB086
CSPI01G03410Cucurbita maxima (Rimu)cmacpiB223
CSPI01G03410Cucurbita maxima (Rimu)cmacpiB397
CSPI01G03410Cucurbita maxima (Rimu)cmacpiB695
CSPI01G03410Cucurbita moschata (Rifu)cmocpiB053
CSPI01G03410Cucurbita moschata (Rifu)cmocpiB079
CSPI01G03410Cucurbita moschata (Rifu)cmocpiB097
CSPI01G03410Cucurbita moschata (Rifu)cmocpiB388
CSPI01G03410Cucumber (Chinese Long) v2cpicuB006
CSPI01G03410Melon (DHL92) v3.5.1cpimeB006
CSPI01G03410Melon (DHL92) v3.5.1cpimeB056
CSPI01G03410Watermelon (Charleston Gray)cpiwcgB061
CSPI01G03410Watermelon (Charleston Gray)cpiwcgB084
CSPI01G03410Watermelon (97103) v1cpiwmB068
CSPI01G03410Watermelon (97103) v1cpiwmB100
CSPI01G03410Cucurbita pepo (Zucchini)cpecpiB029
CSPI01G03410Cucurbita pepo (Zucchini)cpecpiB353
CSPI01G03410Cucurbita pepo (Zucchini)cpecpiB381
CSPI01G03410Cucurbita pepo (Zucchini)cpecpiB509
CSPI01G03410Cucurbita pepo (Zucchini)cpecpiB646
CSPI01G03410Bottle gourd (USVL1VR-Ls)cpilsiB025
CSPI01G03410Bottle gourd (USVL1VR-Ls)cpilsiB062
CSPI01G03410Bottle gourd (USVL1VR-Ls)cpilsiB071
CSPI01G03410Melon (DHL92) v3.6.1cpimedB050
CSPI01G03410Cucumber (Gy14) v2cgybcpiB005
CSPI01G03410Silver-seed gourdcarcpiB0419
CSPI01G03410Silver-seed gourdcarcpiB0497
CSPI01G03410Silver-seed gourdcarcpiB0550
CSPI01G03410Silver-seed gourdcarcpiB0627
CSPI01G03410Silver-seed gourdcarcpiB0628
CSPI01G03410Cucumber (Chinese Long) v3cpicucB004
CSPI01G03410Watermelon (97103) v2cpiwmbB057
CSPI01G03410Watermelon (97103) v2cpiwmbB080
CSPI01G03410Wax gourdcpiwgoB115
CSPI01G03410Wild cucumber (PI 183967)cpicpiB001