Csa1G015750 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G015750
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 2125181 .. 2125829 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGAGATTTATACTTCGAAGCTCCAATCTTCTTTTCGCTTTGGTATTCGCGAATGCATTTCCAACAAAGCGACTTGATTGTGAAGGTGTTCAAATCCCTACATTAGAAATTTGTAGGACCAAGAAGAACTTTGCACTTCAGTTGCCGATCGATTCCAACACCTAAATCTAGTGGAAATAAAGGTGGTCAATCTTAAAATCTTAACTTAATCCGGTAATGATTCGTTAAATTTCATGGAATTAGACTTGCAATTTCTTTGAGTGGGTTTTTTACATGTATTGGAAACCTTTTGTACAATCAAACTTCCATTTCAATGGTGTCTAAAGCAAAGTCTTGCTTAATCGTTCATCGATCTTTTGAATAATTAGTGTTGGTGAGTTAACTTAATTCCATGTTCGATGTGCATGCATCGTCATAGGGTTCACCGTGGGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

mRNA sequence

ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGAGATTTATACTTCGAAGCTCCAATCTTCTTTTCGCTTTGGGTTCACCGTGGGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

Coding sequence (CDS)

ATGAATTTGCATCCTCTTTGTGCGAGTTCTCAATATCCAGAGCCTAAGAAGGATCAATTGGTTTCTATCATCCATCACATTCTGAGAGCTCATCGACCACTGTACCTTTACGCCATGGAGTCTCTCATTGGCAGCAGAGATTTATACTTCGAAGCTCCAATCTTCTTTTCGCTTTGGGTTCACCGTGGGGTTCCTTACCCTTCCCTTCCAAGAACTGCAAGAGATGAGGTTATGAGAAGGATTTTGAGACGGCAACTGGCAGTAGAACGTTAG

Protein sequence

MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWVHRGVPYPSLPRTARDEVMRRILRRQLAVER*
Homology
[Close]
BLAST of Csa1G015750 vs. TrEMBL
Match: A0A0A0LSK7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015750 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 8.9e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60
          MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV
Sbjct: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60

Query: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 91
          HRGVPYPSLPRTARDEVMRRILRRQLAVER
Sbjct: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 90

[Close]
BLAST of Csa1G015750 vs. NCBI nr
Match: gi|700208686|gb|KGN63782.1| (hypothetical protein Csa_1G015750 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60
          MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV
Sbjct: 1  MNLHPLCASSQYPEPKKDQLVSIIHHILRAHRPLYLYAMESLIGSRDLYFEAPIFFSLWV 60

Query: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 91
          HRGVPYPSLPRTARDEVMRRILRRQLAVER
Sbjct: 61 HRGVPYPSLPRTARDEVMRRILRRQLAVER 90

The following BLAST results are available for this feature:
BLAST of Csa1G015750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSK7_CUCSA8.9e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015750 PE=4 SV=1[more]
BLAST of Csa1G015750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208686|gb|KGN63782.1|1.3e-44100.00hypothetical protein Csa_1G015750 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G015750.1Csa1G015750.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G015750CSPI01G03410Wild cucumber (PI 183967)cpicuB000
Csa1G015750CsGy1G003390Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G015750Wax gourdcuwgoB114
Csa1G015750Cucumber (Chinese Long) v2cucuB000
Csa1G015750Cucumber (Gy14) v1cgycuB299
Csa1G015750Cucumber (Gy14) v1cgycuB405
Csa1G015750Cucurbita maxima (Rimu)cmacuB061
Csa1G015750Cucurbita maxima (Rimu)cmacuB087
Csa1G015750Cucurbita maxima (Rimu)cmacuB110
Csa1G015750Cucurbita maxima (Rimu)cmacuB221
Csa1G015750Cucurbita maxima (Rimu)cmacuB393
Csa1G015750Cucurbita maxima (Rimu)cmacuB686
Csa1G015750Cucurbita moschata (Rifu)cmocuB076
Csa1G015750Cucurbita moschata (Rifu)cmocuB050
Csa1G015750Cucurbita moschata (Rifu)cmocuB095
Csa1G015750Cucurbita moschata (Rifu)cmocuB207
Csa1G015750Cucurbita moschata (Rifu)cmocuB385
Csa1G015750Melon (DHL92) v3.5.1cumeB010
Csa1G015750Melon (DHL92) v3.5.1cumeB055
Csa1G015750Watermelon (Charleston Gray)cuwcgB058
Csa1G015750Watermelon (Charleston Gray)cuwcgB082
Csa1G015750Watermelon (97103) v1cuwmB063
Csa1G015750Watermelon (97103) v1cuwmB095
Csa1G015750Cucurbita pepo (Zucchini)cpecuB033
Csa1G015750Cucurbita pepo (Zucchini)cpecuB352
Csa1G015750Cucurbita pepo (Zucchini)cpecuB381
Csa1G015750Cucurbita pepo (Zucchini)cpecuB509
Csa1G015750Cucurbita pepo (Zucchini)cpecuB643
Csa1G015750Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G015750Bottle gourd (USVL1VR-Ls)culsiB061
Csa1G015750Bottle gourd (USVL1VR-Ls)culsiB071
Csa1G015750Cucumber (Gy14) v2cgybcuB005
Csa1G015750Melon (DHL92) v3.6.1cumedB047
Csa1G015750Silver-seed gourdcarcuB0416
Csa1G015750Silver-seed gourdcarcuB0491
Csa1G015750Silver-seed gourdcarcuB0543
Csa1G015750Silver-seed gourdcarcuB0621
Csa1G015750Silver-seed gourdcarcuB0622
Csa1G015750Watermelon (97103) v2cuwmbB055
Csa1G015750Watermelon (97103) v2cuwmbB079