CsGy1G000440 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G000440
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 231922 .. 232524 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCCCTTCTCTCAACAAGAAAAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACAAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCAACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATCCTGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCTTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTAGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTACATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA

mRNA sequence

ATGCTCCCCTTCTCTCAACAAGAAAAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACAAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCAACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATCCTGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCTTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTAGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTACATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA

Coding sequence (CDS)

ATGCTCCCCTTCTCTCAACAAGAAAAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACAAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCAACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATCCTGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCTTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTAGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTACATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA

Protein sequence

MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSSGKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFSLRCLGLHDEEEQFPFLLVPT

Homology

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BLAST of CsGy1G000440 vs. NCBI nr
Match: KGN63472.1 (hypothetical protein Csa_1G001440 [Cucumis sativus])

HSP 1 Score: 387.9 bits (995), Expect = 2.1e-104
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
           MLPFSQQE+DAELISTLNRHATPSSSWKIRTN+LAYEEIRTERRAAIASGNLKARRLSYD
Sbjct: 1   MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60

Query: 61  DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
           DAIDMSLHLNTNFLLHGDYLDE PQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS
Sbjct: 61  DAIDMSLHLNTNFLLHGDYLDESPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120

Query: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
           GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS
Sbjct: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180

Query: 181 LRCLGLHDEEEQFPFLLVPT 201
           LRCLGLHDEEEQFPFLLVPT
Sbjct: 181 LRCLGLHDEEEQFPFLLVPT 200

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BLAST of CsGy1G000440 vs. NCBI nr
Match: EOY22525.1 (Uncharacterized protein TCM_014671 [Theobroma cacao])

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-04
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 12  ELISTLNRHATPSS--SWKIRTNKLAYEEIRTERRAAIASGNLKARRL 58
           +L+S+L   ++PS   +WK+RTN LA EEI TERRAAI SG LK RRL
Sbjct: 72  KLMSSLQHRSSPSERVAWKVRTNDLAVEEILTERRAAIESGKLKGRRL 119

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BLAST of CsGy1G000440 vs. NCBI nr
Match: PPD91487.1 (hypothetical protein GOBAR_DD11566 [Gossypium barbadense])

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-04
Identity = 58/191 (30.37%), Postives = 79/191 (41.36%), Query Frame = 0


Query: 26  SWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTN----------FLL 85
           +WK+RTN LA EEI  ERRAAI SG LK RRL  DD     +    N           + 
Sbjct: 74  AWKVRTNDLAVEEILRERRAAIESGKLKGRRLFEDDEDVNEVSFGRNEGSCSGFEIGLVQ 133

Query: 86  HGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSSGKFVPLQMKEQMAAK 145
             +    F  + D     + PG+E          SY   SSSSSS               
Sbjct: 134 ESEVRSVFSYESDNYEDENWPGKEHMSP------SYPHCSSSSSS------------LCG 193

Query: 146 AEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAI-ASVPMVIF-----SLRCLGLHDE 201
           AE  +           E + G  +G+ KV L  + I  +V +V+F     S    G++++
Sbjct: 194 AETLQRGSGTEMATMAEKKIGSDVGSGKVRLIVIKIWVAVSLVVFIVGIISTSSFGIYED 243

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BLAST of CsGy1G000440 vs. TrEMBL
Match: tr|A0A0A0LRR5|A0A0A0LRR5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001440 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.4e-104
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
           MLPFSQQE+DAELISTLNRHATPSSSWKIRTN+LAYEEIRTERRAAIASGNLKARRLSYD
Sbjct: 1   MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60

Query: 61  DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
           DAIDMSLHLNTNFLLHGDYLDE PQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS
Sbjct: 61  DAIDMSLHLNTNFLLHGDYLDESPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120

Query: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
           GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS
Sbjct: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180

Query: 181 LRCLGLHDEEEQFPFLLVPT 201
           LRCLGLHDEEEQFPFLLVPT
Sbjct: 181 LRCLGLHDEEEQFPFLLVPT 200

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BLAST of CsGy1G000440 vs. TrEMBL
Match: tr|A0A061FYB1|A0A061FYB1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014671 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-04
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 12  ELISTLNRHATPSS--SWKIRTNKLAYEEIRTERRAAIASGNLKARRL 58
           +L+S+L   ++PS   +WK+RTN LA EEI TERRAAI SG LK RRL
Sbjct: 72  KLMSSLQHRSSPSERVAWKVRTNDLAVEEILTERRAAIESGKLKGRRL 119

[Close]

BLAST of CsGy1G000440 vs. TrEMBL
Match: tr|A0A2P5RXF8|A0A2P5RXF8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD11566 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.2e-04
Identity = 58/191 (30.37%), Postives = 79/191 (41.36%), Query Frame = 0


Query: 26  SWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTN----------FLL 85
           +WK+RTN LA EEI  ERRAAI SG LK RRL  DD     +    N           + 
Sbjct: 74  AWKVRTNDLAVEEILRERRAAIESGKLKGRRLFEDDEDVNEVSFGRNEGSCSGFEIGLVQ 133

Query: 86  HGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSSGKFVPLQMKEQMAAK 145
             +    F  + D     + PG+E          SY   SSSSSS               
Sbjct: 134 ESEVRSVFSYESDNYEDENWPGKEHMSP------SYPHCSSSSSS------------LCG 193

Query: 146 AEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAI-ASVPMVIF-----SLRCLGLHDE 201
           AE  +           E + G  +G+ KV L  + I  +V +V+F     S    G++++
Sbjct: 194 AETLQRGSGTEMATMAEKKIGSDVGSGKVRLIVIKIWVAVSLVVFIVGIISTSSFGIYED 243

[Close]

BLAST of CsGy1G000440 vs. TrEMBL
Match: tr|A0A2N9END5|A0A2N9END5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4092 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.1e-04
Identity = 58/182 (31.87%), Postives = 80/182 (43.96%), Query Frame = 0


Query: 26  SWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTNFLLHGDYLDEFPQ 85
           +WK+RTN LA +EI  ER   I SG LK RRL      +  +       +    + E   
Sbjct: 16  NWKVRTNDLAMDEIYRERLEVIESGRLKGRRLFEGVEGETEMGFEGADKICNGLVQESEV 75

Query: 86  DDDQMIPSSDPGEEKAEQVCLNAL--SYSCASSSSSSGKFVPLQMKEQMAAKAEVEENVR 145
                  S D   E       N L  S+ C SSSSSS    P    E +  + EV E  +
Sbjct: 76  RSVSFCDSDDDHHENEPGGISNVLPVSFQCCSSSSSS----PSLCDEYV--EGEVLEEEK 135

Query: 146 AVVGEIKMETRNGCKIGN---WKVGLACLAIASV--PMVIFSLRCLGLHDEEEQFPFLLV 201
            VV  ++M   +    GN   W V +  LAIAS+   + I  +R  G + +E +   +LV
Sbjct: 136 KVVASVEMRKVSYGGSGNGRKWMVVMGWLAIASIVFAICIVPMRRFGGYGDEHE--MILV 189

[Close]

BLAST of CsGy1G000440 vs. TrEMBL
Match: tr|A0A2P5WGA4|A0A2P5WGA4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30567 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.1e-04
Identity = 57/191 (29.84%), Postives = 79/191 (41.36%), Query Frame = 0


Query: 26  SWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTN----------FLL 85
           +WK+RTN LA EEI  ERRAAI SG LK RRL  DD     +    N           + 
Sbjct: 74  AWKVRTNDLAVEEILRERRAAIESGKLKGRRLFEDDEDVNEVSFGRNEGSCSGFEIGLVQ 133

Query: 86  HGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSSGKFVPLQMKEQMAAK 145
             +    F  + D     + PG+E          SY   SSSSSS               
Sbjct: 134 ESEVRSVFSYESDNYEDENWPGKEHMSP------SYPHCSSSSSS------------LCG 193

Query: 146 AEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAI-ASVPMVIF-----SLRCLGLHDE 201
           AE  +           E + G  +G+ KV L  + I  ++ +V+F     S    G++++
Sbjct: 194 AETLQRGSGTEMATMAEKKIGSDVGSGKVRLIVIKIWVAISLVVFIVGIISTSSFGIYED 243

The following BLAST results are available for this feature:

BLAST of CsGy1G000440 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63472.1	2.1e-104	98.50	hypothetical protein Csa_1G001440 [Cucumis sativus]	[more]
EOY22525.1	5.5e-04	60.42	Uncharacterized protein TCM_014671 [Theobroma cacao]	[more]
PPD91487.1	9.4e-04	30.37	hypothetical protein GOBAR_DD11566 [Gossypium barbadense]	[more]

BLAST of CsGy1G000440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G000440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G000440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRR5\|A0A0A0LRR5_CUCSA	1.4e-104	98.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001440 PE=4 SV=1	[more]
tr\|A0A061FYB1\|A0A061FYB1_THECC	3.7e-04	60.42	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014671 PE=4 SV=1	[more]
tr\|A0A2P5RXF8\|A0A2P5RXF8_GOSBA	6.2e-04	30.37	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD11566 PE=4 SV...	[more]
tr\|A0A2N9END5\|A0A2N9END5_FAGSY	8.1e-04	31.87	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4092 PE=4 SV=1	[more]
tr\|A0A2P5WGA4\|A0A2P5WGA4_GOSBA	8.1e-04	29.84	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30567 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G000440.1	CsGy1G000440.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G000440	Cla019287	Watermelon (97103) v1	cgybwmB094
CsGy1G000440	Csa1G001440	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G000440	MELO3C026195	Melon (DHL92) v3.5.1	cgybmeB048
CsGy1G000440	ClCG06G018030	Watermelon (Charleston Gray)	cgybwcgB078
CsGy1G000440	CSPI01G00430	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G000440	Lsi06G016520	Bottle gourd (USVL1VR-Ls)	cgyblsiB067
CsGy1G000440	Cp4.1LG18g09090	Cucurbita pepo (Zucchini)	cgybcpeB053
CsGy1G000440	MELO3C026195.2	Melon (DHL92) v3.6.1	cgybmedB043
CsGy1G000440	CsaV3_1G000440	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G000440	Cla97C06G127770	Watermelon (97103) v2	cgybwmbB076
CsGy1G000440	Bhi02G000507	Wax gourd	cgybwgoB077

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G000440	Melon (DHL92) v3.6.1	cgybmedB017
CsGy1G000440	Watermelon (Charleston Gray)	cgybwcgB048
CsGy1G000440	Watermelon (Charleston Gray)	cgybwcgB062
CsGy1G000440	Watermelon (97103) v1	cgybwmB028
CsGy1G000440	Wild cucumber (PI 183967)	cgybcpiB012
CsGy1G000440	Wild cucumber (PI 183967)	cgybcpiB019
CsGy1G000440	Silver-seed gourd	carcgybB0371
CsGy1G000440	Silver-seed gourd	carcgybB0442
CsGy1G000440	Silver-seed gourd	carcgybB0608
CsGy1G000440	Cucumber (Chinese Long) v3	cgybcucB011
CsGy1G000440	Cucumber (Chinese Long) v3	cgybcucB026
CsGy1G000440	Watermelon (97103) v2	cgybwmbB048
CsGy1G000440	Wax gourd	cgybwgoB060
CsGy1G000440	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G000440	Cucumber (Gy14) v2	cgybcgybB015
CsGy1G000440	Cucurbita maxima (Rimu)	cgybcmaB004
CsGy1G000440	Cucurbita maxima (Rimu)	cgybcmaB028
CsGy1G000440	Cucurbita maxima (Rimu)	cgybcmaB045
CsGy1G000440	Cucurbita maxima (Rimu)	cgybcmaB081
CsGy1G000440	Cucurbita maxima (Rimu)	cgybcmaB082
CsGy1G000440	Cucurbita moschata (Rifu)	cgybcmoB005
CsGy1G000440	Cucurbita moschata (Rifu)	cgybcmoB028
CsGy1G000440	Cucurbita moschata (Rifu)	cgybcmoB032
CsGy1G000440	Cucurbita moschata (Rifu)	cgybcmoB076
CsGy1G000440	Cucurbita moschata (Rifu)	cgybcmoB078
CsGy1G000440	Cucurbita moschata (Rifu)	cgybcmoB097
CsGy1G000440	Cucurbita pepo (Zucchini)	cgybcpeB015
CsGy1G000440	Cucurbita pepo (Zucchini)	cgybcpeB078
CsGy1G000440	Cucurbita pepo (Zucchini)	cgybcpeB106
CsGy1G000440	Cucurbita pepo (Zucchini)	cgybcpeB117
CsGy1G000440	Cucurbita pepo (Zucchini)	cgybcpeB126
CsGy1G000440	Cucumber (Chinese Long) v2	cgybcuB012
CsGy1G000440	Cucumber (Chinese Long) v2	cgybcuB022
CsGy1G000440	Bottle gourd (USVL1VR-Ls)	cgyblsiB035
CsGy1G000440	Melon (DHL92) v3.5.1	cgybmeB020