CsGy1G000440.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G000440.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 231922 .. 232524 (-)
Sequence length	603

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCCCTTCTCTCAACAAGAAAAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACAAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCAACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATCCTGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCTTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTAGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTACATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA

mRNA sequence

ATGCTCCCCTTCTCTCAACAAGAAAAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACAAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCAACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATCCTGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCTTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTAGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTACATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA

Coding sequence (CDS)

ATGCTCCCCTTCTCTCAACAAGAAAAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACAAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCAACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATCCTGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCTTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTAGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTACATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA

Protein sequence

MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSSGKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFSLRCLGLHDEEEQFPFLLVPT

Homology

[Close]

BLAST of CsGy1G000440.1 vs. NCBI nr
Match: KGN63472.1 (hypothetical protein Csa_1G001440 [Cucumis sativus])

HSP 1 Score: 387.9 bits (995), Expect = 2.1e-104
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
           MLPFSQQE+DAELISTLNRHATPSSSWKIRTN+LAYEEIRTERRAAIASGNLKARRLSYD
Sbjct: 1   MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60

Query: 61  DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
           DAIDMSLHLNTNFLLHGDYLDE PQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS
Sbjct: 61  DAIDMSLHLNTNFLLHGDYLDESPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120

Query: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
           GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS
Sbjct: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180

Query: 181 LRCLGLHDEEEQFPFLLVPT 201
           LRCLGLHDEEEQFPFLLVPT
Sbjct: 181 LRCLGLHDEEEQFPFLLVPT 200

[Close]

BLAST of CsGy1G000440.1 vs. NCBI nr
Match: EOY22525.1 (Uncharacterized protein TCM_014671 [Theobroma cacao])

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-04
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 12  ELISTLNRHATPSS--SWKIRTNKLAYEEIRTERRAAIASGNLKARRL 58
           +L+S+L   ++PS   +WK+RTN LA EEI TERRAAI SG LK RRL
Sbjct: 72  KLMSSLQHRSSPSERVAWKVRTNDLAVEEILTERRAAIESGKLKGRRL 119

[Close]

BLAST of CsGy1G000440.1 vs. NCBI nr
Match: PPD91487.1 (hypothetical protein GOBAR_DD11566 [Gossypium barbadense])

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-04
Identity = 58/191 (30.37%), Postives = 79/191 (41.36%), Query Frame = 0


Query: 26  SWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTN----------FLL 85
           +WK+RTN LA EEI  ERRAAI SG LK RRL  DD     +    N           + 
Sbjct: 74  AWKVRTNDLAVEEILRERRAAIESGKLKGRRLFEDDEDVNEVSFGRNEGSCSGFEIGLVQ 133

Query: 86  HGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSSGKFVPLQMKEQMAAK 145
             +    F  + D     + PG+E          SY   SSSSSS               
Sbjct: 134 ESEVRSVFSYESDNYEDENWPGKEHMSP------SYPHCSSSSSS------------LCG 193

Query: 146 AEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAI-ASVPMVIF-----SLRCLGLHDE 201
           AE  +           E + G  +G+ KV L  + I  +V +V+F     S    G++++
Sbjct: 194 AETLQRGSGTEMATMAEKKIGSDVGSGKVRLIVIKIWVAVSLVVFIVGIISTSSFGIYED 243

[Close]

BLAST of CsGy1G000440.1 vs. TrEMBL
Match: tr|A0A0A0LRR5|A0A0A0LRR5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001440 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.4e-104
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
           MLPFSQQE+DAELISTLNRHATPSSSWKIRTN+LAYEEIRTERRAAIASGNLKARRLSYD
Sbjct: 1   MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60

Query: 61  DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
           DAIDMSLHLNTNFLLHGDYLDE PQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS
Sbjct: 61  DAIDMSLHLNTNFLLHGDYLDESPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120

Query: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
           GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS
Sbjct: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180

Query: 181 LRCLGLHDEEEQFPFLLVPT 201
           LRCLGLHDEEEQFPFLLVPT
Sbjct: 181 LRCLGLHDEEEQFPFLLVPT 200

[Close]

BLAST of CsGy1G000440.1 vs. TrEMBL
Match: tr|A0A061FYB1|A0A061FYB1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014671 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-04
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 12  ELISTLNRHATPSS--SWKIRTNKLAYEEIRTERRAAIASGNLKARRL 58
           +L+S+L   ++PS   +WK+RTN LA EEI TERRAAI SG LK RRL
Sbjct: 72  KLMSSLQHRSSPSERVAWKVRTNDLAVEEILTERRAAIESGKLKGRRL 119

[Close]

BLAST of CsGy1G000440.1 vs. TrEMBL
Match: tr|A0A2P5RXF8|A0A2P5RXF8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD11566 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.2e-04
Identity = 58/191 (30.37%), Postives = 79/191 (41.36%), Query Frame = 0


Query: 26  SWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTN----------FLL 85
           +WK+RTN LA EEI  ERRAAI SG LK RRL  DD     +    N           + 
Sbjct: 74  AWKVRTNDLAVEEILRERRAAIESGKLKGRRLFEDDEDVNEVSFGRNEGSCSGFEIGLVQ 133

Query: 86  HGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSSGKFVPLQMKEQMAAK 145
             +    F  + D     + PG+E          SY   SSSSSS               
Sbjct: 134 ESEVRSVFSYESDNYEDENWPGKEHMSP------SYPHCSSSSSS------------LCG 193

Query: 146 AEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAI-ASVPMVIF-----SLRCLGLHDE 201
           AE  +           E + G  +G+ KV L  + I  +V +V+F     S    G++++
Sbjct: 194 AETLQRGSGTEMATMAEKKIGSDVGSGKVRLIVIKIWVAVSLVVFIVGIISTSSFGIYED 243

[Close]

BLAST of CsGy1G000440.1 vs. TrEMBL
Match: tr|A0A2N9END5|A0A2N9END5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4092 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.1e-04
Identity = 58/182 (31.87%), Postives = 80/182 (43.96%), Query Frame = 0


Query: 26  SWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTNFLLHGDYLDEFPQ 85
           +WK+RTN LA +EI  ER   I SG LK RRL      +  +       +    + E   
Sbjct: 16  NWKVRTNDLAMDEIYRERLEVIESGRLKGRRLFEGVEGETEMGFEGADKICNGLVQESEV 75

Query: 86  DDDQMIPSSDPGEEKAEQVCLNAL--SYSCASSSSSSGKFVPLQMKEQMAAKAEVEENVR 145
                  S D   E       N L  S+ C SSSSSS    P    E +  + EV E  +
Sbjct: 76  RSVSFCDSDDDHHENEPGGISNVLPVSFQCCSSSSSS----PSLCDEYV--EGEVLEEEK 135

Query: 146 AVVGEIKMETRNGCKIGN---WKVGLACLAIASV--PMVIFSLRCLGLHDEEEQFPFLLV 201
            VV  ++M   +    GN   W V +  LAIAS+   + I  +R  G + +E +   +LV
Sbjct: 136 KVVASVEMRKVSYGGSGNGRKWMVVMGWLAIASIVFAICIVPMRRFGGYGDEHE--MILV 189

[Close]

BLAST of CsGy1G000440.1 vs. TrEMBL
Match: tr|A0A2P5WGA4|A0A2P5WGA4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30567 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.1e-04
Identity = 57/191 (29.84%), Postives = 79/191 (41.36%), Query Frame = 0


Query: 26  SWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTN----------FLL 85
           +WK+RTN LA EEI  ERRAAI SG LK RRL  DD     +    N           + 
Sbjct: 74  AWKVRTNDLAVEEILRERRAAIESGKLKGRRLFEDDEDVNEVSFGRNEGSCSGFEIGLVQ 133

Query: 86  HGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSSGKFVPLQMKEQMAAK 145
             +    F  + D     + PG+E          SY   SSSSSS               
Sbjct: 134 ESEVRSVFSYESDNYEDENWPGKEHMSP------SYPHCSSSSSS------------LCG 193

Query: 146 AEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAI-ASVPMVIF-----SLRCLGLHDE 201
           AE  +           E + G  +G+ KV L  + I  ++ +V+F     S    G++++
Sbjct: 194 AETLQRGSGTEMATMAEKKIGSDVGSGKVRLIVIKIWVAISLVVFIVGIISTSSFGIYED 243

The following BLAST results are available for this feature:

BLAST of CsGy1G000440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63472.1	2.1e-104	98.50	hypothetical protein Csa_1G001440 [Cucumis sativus]	[more]
EOY22525.1	5.5e-04	60.42	Uncharacterized protein TCM_014671 [Theobroma cacao]	[more]
PPD91487.1	9.4e-04	30.37	hypothetical protein GOBAR_DD11566 [Gossypium barbadense]	[more]

BLAST of CsGy1G000440.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G000440.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G000440.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRR5\|A0A0A0LRR5_CUCSA	1.4e-104	98.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001440 PE=4 SV=1	[more]
tr\|A0A061FYB1\|A0A061FYB1_THECC	3.7e-04	60.42	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_014671 PE=4 SV=1	[more]
tr\|A0A2P5RXF8\|A0A2P5RXF8_GOSBA	6.2e-04	30.37	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD11566 PE=4 SV...	[more]
tr\|A0A2N9END5\|A0A2N9END5_FAGSY	8.1e-04	31.87	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4092 PE=4 SV=1	[more]
tr\|A0A2P5WGA4\|A0A2P5WGA4_GOSBA	8.1e-04	29.84	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30567 PE=4 SV...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G000440	CsGy1G000440	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G000440.1.CDS.1	CsGy1G000440.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G000440.1.exon.1	CsGy1G000440.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G000440.1	CsGy1G000440.1-protein	polypeptide