CSPI01G00430 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G00430
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 234676 .. 235730 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAGGGGAAGGAGATGCTGCAGAGACCAAGCTTAGGTGCATCTACTCGTATCATGAAACTTATATTATATATAGAGAGAGAGAGAGAGTTGAAGGCCAGCAGATGAAATCTCAACGGCCAACTCAATATTCAAACAAACACAAAACTTAGATAACCATCACACCCACCATGATCTCGAGAACGTGGGAAGTTTTCTTTCGAAATCAAAACCCCCCCATTTCCCGATGAAAACGAAACAACCAAATCAAACTCCCAAATTTTGCTTATCCAAATCCCAACAACGGTCTCCATATATTCACTACTGCCATTGGAATCAGTACCACAAAAGCCTTCTTACAATTCCAGTTACCATCCCTCTTCTTCACCCACAACAATGCTCCCCTTCTCTCAACAAGAAGAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACCAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCGACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATTATGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCCTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTGGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTCCATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGAATTTATGTGTAAAATATCAATGTGTTTATCTATAAAAAGAAAAAATATATATACACCTATTAGCCACACCATATATAAG

mRNA sequence

ATGCTCCCCTTCTCTCAACAAGAAGAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACCAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCGACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATTATGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCCTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTGGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTCCATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA

Coding sequence (CDS)

ATGCTCCCCTTCTCTCAACAAGAAGAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACCAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCGACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATTATGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCCTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTGGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTCCATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA
Homology
[Close]
BLAST of CSPI01G00430 vs. TrEMBL
Match: A0A0A0LRR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001440 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 3.8e-104
Identity = 197/200 (98.50%), Postives = 198/200 (99.00%), Query Frame = 1 

Query: 1   MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60
           MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD
Sbjct: 1   MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60

Query: 61  DAIDMSLHLNTDFLLHGDYLDEFPQDDDQMIPSSDYGEEKAEQVCLNALSYSCASSSSSS 120
           DAIDMSLHLNT+FLLHGDYLDE PQDDDQMIPSSD GEEKAEQVCLNALSYSCASSSSSS
Sbjct: 61  DAIDMSLHLNTNFLLHGDYLDESPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120

Query: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
           GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS
Sbjct: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180

Query: 181 LRCLGLHDEEEQFPFLLVPT 201
           LRCLGLHDEEEQFPFLLVPT
Sbjct: 181 LRCLGLHDEEEQFPFLLVPT 200

[Close]
BLAST of CSPI01G00430 vs. NCBI nr
Match: gi|700208376|gb|KGN63472.1| (hypothetical protein Csa_1G001440 [Cucumis sativus])

HSP 1 Score: 385.6 bits (989), Expect = 5.4e-104
Identity = 197/200 (98.50%), Postives = 198/200 (99.00%), Query Frame = 1 

Query: 1   MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60
           MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD
Sbjct: 1   MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60

Query: 61  DAIDMSLHLNTDFLLHGDYLDEFPQDDDQMIPSSDYGEEKAEQVCLNALSYSCASSSSSS 120
           DAIDMSLHLNT+FLLHGDYLDE PQDDDQMIPSSD GEEKAEQVCLNALSYSCASSSSSS
Sbjct: 61  DAIDMSLHLNTNFLLHGDYLDESPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120

Query: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
           GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS
Sbjct: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180

Query: 181 LRCLGLHDEEEQFPFLLVPT 201
           LRCLGLHDEEEQFPFLLVPT
Sbjct: 181 LRCLGLHDEEEQFPFLLVPT 200

The following BLAST results are available for this feature:
BLAST of CSPI01G00430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G00430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRR5_CUCSA3.8e-10498.50Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001440 PE=4 SV=1[more]
BLAST of CSPI01G00430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G00430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208376|gb|KGN63472.1|5.4e-10498.50hypothetical protein Csa_1G001440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G00430.1CSPI01G00430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G00430Cla019287Watermelon (97103) v1cpiwmB099
CSPI01G00430Csa1G001440Cucumber (Chinese Long) v2cpicuB000
CSPI01G00430MELO3C026195Melon (DHL92) v3.5.1cpimeB055
CSPI01G00430ClCG06G018030Watermelon (Charleston Gray)cpiwcgB083
CSPI01G00430Lsi06G016520Bottle gourd (USVL1VR-Ls)cpilsiB070
CSPI01G00430MELO3C026195.2Melon (DHL92) v3.6.1cpimedB049
CSPI01G00430CsaV3_1G000440Cucumber (Chinese Long) v3cpicucB001
CSPI01G00430Cla97C06G127770Watermelon (97103) v2cpiwmbB079
CSPI01G00430Bhi02G000507Wax gourdcpiwgoB081
CSPI01G00430Cp4.1LG18g09090Cucurbita pepo (Zucchini)cpecpiB361
CSPI01G00430CsGy1G000440Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G00430Silver-seed gourdcarcpiB0396
CSPI01G00430Silver-seed gourdcarcpiB0642
CSPI01G00430Cucumber (Chinese Long) v3cpicucB015
CSPI01G00430Cucumber (Chinese Long) v3cpicucB028
CSPI01G00430Cucumber (Chinese Long) v3cpicucB053
CSPI01G00430Watermelon (97103) v2cpiwmbB051
CSPI01G00430Wax gourdcpiwgoB061
CSPI01G00430Wild cucumber (PI 183967)cpicpiB003
CSPI01G00430Wild cucumber (PI 183967)cpicpiB014
CSPI01G00430Cucumber (Gy14) v1cgycpiB229
CSPI01G00430Cucurbita maxima (Rimu)cmacpiB049
CSPI01G00430Cucurbita maxima (Rimu)cmacpiB085
CSPI01G00430Cucurbita maxima (Rimu)cmacpiB227
CSPI01G00430Cucurbita moschata (Rifu)cmocpiB040
CSPI01G00430Cucurbita moschata (Rifu)cmocpiB079
CSPI01G00430Cucurbita moschata (Rifu)cmocpiB213
CSPI01G00430Cucurbita moschata (Rifu)cmocpiB396
CSPI01G00430Cucumber (Chinese Long) v2cpicuB009
CSPI01G00430Cucumber (Chinese Long) v2cpicuB024
CSPI01G00430Melon (DHL92) v3.5.1cpimeB015
CSPI01G00430Melon (DHL92) v3.5.1cpimeB079
CSPI01G00430Watermelon (Charleston Gray)cpiwcgB053
CSPI01G00430Watermelon (Charleston Gray)cpiwcgB068
CSPI01G00430Watermelon (97103) v1cpiwmB029
CSPI01G00430Cucurbita pepo (Zucchini)cpecpiB515
CSPI01G00430Cucurbita pepo (Zucchini)cpecpiB656
CSPI01G00430Bottle gourd (USVL1VR-Ls)cpilsiB001
CSPI01G00430Bottle gourd (USVL1VR-Ls)cpilsiB041
CSPI01G00430Melon (DHL92) v3.6.1cpimedB014
CSPI01G00430Cucumber (Gy14) v2cgybcpiB013
CSPI01G00430Cucumber (Gy14) v2cgybcpiB095