Cp4.1LG20g08550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g08550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMethyl-CpG-binding domain-containing family protein
LocationCp4.1LG20 : 7417591 .. 7420362 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTTTCCCTGTTTGCTTCTTCGTCTTCGTCTTGCAAAGCCCCGACCCACATGTCTGCTTTCGGAACTTCGATATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGATGACTCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCCAGAGGGACTGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGGTGAATTGATTCCTTCTCTTTTGACTAGTATCATTTCGATGTTGAATTTTGAGTTCCTTTTCTTGACTGGCGTTCTTGAGTTTTGGAAGATCGTGTTCAAAGTGGAGATGAGTCAGTTTTGGTAATTGTTCGACCATGCAAGCAATATTCTGTTCCATGGCTCTGGTTACTGAACTTCTCTATGCAATTTAATGTCCGATGATAGAACAGGGCTTTACCGTCGCTGGAATTTTTTTTCTTCTACTCTAGCCGTTGGACTCTTGGTTTAGAATTTCTACCAGTCAGGAATGATTTTTCGGATGAAAACATGAACCAATTAGAGAAATTATCATTGTTTACTGAAAATGATCTTTTGTTTTTGCTTCGAGGAGTTGGTTGTAGTAGCATTCCCTAGTCGATTGTTCTCTCATCAGTTATGGGAAAGAAGAACTGTATCAAGTAGTAAAGGGTTTAGTAATTACTTCTGGAATGTGATCATCCGAAAAATGAATCACTACCTAAATTCTCTGTCGTATTGATGGGGATTGCAGTTTTAGTTACCTGATTGGGAATTTTGAAGTTCCGTAGGAACAAGTAAACTACAAGAATTCATTTCCTTCCTCTCTAAATTTGTTTAGGGAATTCATTTTTCATTTATTTGGTATAGTATTTAAGTATGTCCATGATTTCGAGTGAGTTCATCTGACAATCCGAGTGATTCCGTCGTGCAGTTACGATATCGAACTTTCTTAGTCCTTTTCTCTGGATGGTGAACAAGCCTCGACGAACTTTGATATAGACTTAGGTGCTTCTTTGGATTTTGGAACTCTAGCTACTTACCATTTATATGAAATCAATTAGCATAACAGAGCTTGGTTGATTAGGATGGAGACTATCATTGGAAAAAGAATAACAAAAACCTCCACTGTTATGTTAGCCTGTTCATAAATGATGAGGTTCAAATTGTAGGATAGTATTTGGAACTGCCCAAGCCCACCGCTAGCAAATACTGTCTCTTTAGCCCGTTACGTATCATTGTCAGCCTCACGATTTAAAACGCGTCTACTAGGTAGAGGTTTCCATACCCTTATAAGAAATGTTTTGTTCCCTTCTCTAACCAATGTGGGATCTCACAATCCACCCCCTTAGGGCCCAACGTCTTGCTGGAACACCGCTCGGTGTTTGCTTTGATACCATTTGTAACAACCCAAGCTCCTGCTAGCAAATATTGTCCGCTTTGGCCCGTTACTTATCACCTTTATAAGGAATGTTTCGTTTCCTTCTCCAACCAATATGGGATCTCACCTCTGTATGCATGAGGGTGTACAGAGGTGAATAGCTCTTGACTCCATACTTGGACTGTTGCTTGGTGCTTGATATATGATGCTTCACTAAGAATCATGTTTGAGATGGATTATACCTTAACTTTGTATTCATATATAGCTCTGTTTAAAAGCACATTGACATTGTCAATAGACAAAACAAATGCAAGCAATTAAGTACGGTCACAAGTACCATTTAGCATTTAATGATTGACTACGAGTTCGAGTGTCGTTTGAATTGAGTGTTCTTTTTTTTTTTTCATGTCATGTTGAATTAGTTGGGAGCATGCTTGGGCCCATTTATTTCTTGAGATTCCCCTTTCTTATTATCCTGCTTTACATATTTATTAAACAAACAAACAGTAGAGAATGTCAAAGGAATCTAATCCATCCTCATGTTTCTTGCAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGGTGAGTCGAAAGCTAACATTCCTTCTTTTGCACCCAATGGGATATTCAGACCTTCTCATACGTTTTATCGCTTCGATTTACAATTGCAGTCTGCTGACGGCCCCGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTAAACTCCTCAGCCGATCAAAAGCTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAATGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTCAAAACCAGATTTGGT

mRNA sequence

CACTTTCCCTGTTTGCTTCTTCGTCTTCGTCTTGCAAAGCCCCGACCCACATGTCTGCTTTCGGAACTTCGATATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGATGACTCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCCAGAGGGACTGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCCGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTAAACTCCTCAGCCGATCAAAAGCTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAATGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTCAAAACCAGATTTGGT

Coding sequence (CDS)

ATGTCTGCTTTCGGAACTTCGATATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGATGACTCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCCAGAGGGACTGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCCGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTAAACTCCTCAGCCGATCAAAAGCTTGA

Protein sequence

MSAFGTSISDPDWPRRDPTRFNLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSKA
Homology
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BLAST of Cp4.1LG20g08550 vs. Swiss-Prot
Match: MBD6_ARATH (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.0e-32
Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 1 

Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNG 89
           PPDPLL +G+FI  S+A  GTL SS                     R P +     +G+G
Sbjct: 10  PPDPLLASGAFI--SSAGDGTLDSSAK-------------------RRPIQGGIGISGSG 69

Query: 90  DSPATKKLSGS----RGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDP 149
           +S      +G+      T++  +  ++   NWLPPGW +ED++RTSGATAG+VDKYY++P
Sbjct: 70  ESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEP 129

Query: 150 VSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNA-----KSAPL 209
            +GR+FRS+ EVLY+LE GT ++  K  +    + D  E   + + +  A        PL
Sbjct: 130 NTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPPPPL 189

Query: 210 NFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLS 249
           +FDF N P+KV W + +  +E W P I + KV  S +R+W  AF  ++
Sbjct: 190 DFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFIT 216

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BLAST of Cp4.1LG20g08550 vs. Swiss-Prot
Match: MBD5_ARATH (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-30
Identity = 75/171 (43.86%), Postives = 98/171 (57.31%), Query Frame = 1 

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
           ++PAT   S SR      K A+    NWLPP W  E RVRTSG  AGTVDK+Y++P++GR
Sbjct: 13  ENPATPVDSKSR------KRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGR 72

Query: 150 RFRSKIEVLYFLETGTLRKRKKSLDGNGTS--------ADGPEEPKNKKSSNNAKSAPLN 209
           +FRSK EVLY+LE GT +K+      NG S             + K+ K        PLN
Sbjct: 73  KFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLN 132

Query: 210 FDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSKA 253
           FDF NVPEKV W   + S+EAW PFI + K+ +S  ++W   F L++   A
Sbjct: 133 FDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVTSQNA 177

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BLAST of Cp4.1LG20g08550 vs. TrEMBL
Match: A0A0A0LXE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G522010 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.8e-95
Identity = 189/256 (73.83%), Postives = 207/256 (80.86%), Query Frame = 1 

Query: 1   MSAFGTSISDPDWPR-RDPTRFNLPFSNHLPPDPLLDAGSFIDSSAAR----CGTLPSSP 60
           MSA GTS  D DWPR  DPTR +LPFS+HLPPDPLL AGSFIDSS +       T+PS  
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  NHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNGDSPATKKLSGSRGTDASPKSASSEKP 120
             SRDLD   RK   TSST RSP R D LN+ NGDS  +KK+S S    AS KSA SE+P
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSAS--NSASSKSALSERP 143

Query: 121 NWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDG 180
           NWLPPGW++EDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVLYFLETGTLRKRKKSLDG
Sbjct: 144 NWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDG 203

Query: 181 NGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQS 240
           N +S D  EEPK KKSS+NAK+APLNFDFFNVPEKVEWVLTDPSQ+AWTPFI+NEKVP+S
Sbjct: 204 NPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPES 263

Query: 241 TKREWVAAFKLLSRSK 252
           TK EWV AF+LL RSK
Sbjct: 264 TKCEWVGAFQLLGRSK 277

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BLAST of Cp4.1LG20g08550 vs. TrEMBL
Match: A0A067G387_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045019mg PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-43
Identity = 109/234 (46.58%), Postives = 144/234 (61.54%), Query Frame = 1 

Query: 22  NLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRD 81
           NL  + ++PPDPLLD+G FID++        S  N +   D   +K+     T+R    +
Sbjct: 27  NLFSTVNVPPDPLLDSGFFIDAAPPAT----SGSNTTTTNDQTSKKRG----TIREHKSE 86

Query: 82  DSLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKY 141
           +       +S  T + + +R   A+          WLPPGW +EDRVRTSGATAGTVDKY
Sbjct: 87  NLATTNGTESALTPETASTRRLTATEA--------WLPPGWEIEDRVRTSGATAGTVDKY 146

Query: 142 YFDPVSGRRFRSKIEVLYFLETGTLRKRKK-----SLDGNGTSADGPEEPKNKKSSNNAK 201
           YF   SGRRFRSK EVLYFLETGT RKR+K      +D +G++A      K KK +  AK
Sbjct: 147 YFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAG---STKQKKPNIKAK 206

Query: 202 SAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRS 251
           ++ LNFD+FN PE VEWVLTDPS+ +WTPFI   +VP+S +++W AAF  L+ S
Sbjct: 207 TSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTS 241

[Close]
BLAST of Cp4.1LG20g08550 vs. TrEMBL
Match: V4UFH3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029152mg PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-43
Identity = 109/234 (46.58%), Postives = 144/234 (61.54%), Query Frame = 1 

Query: 22  NLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRD 81
           NL  + ++PPDPLLD+G FID++        S  N +   D   +K+     T+R    +
Sbjct: 27  NLFSTVNVPPDPLLDSGFFIDAAPPAT----SGSNTTTTNDQTSKKRG----TIREHKSE 86

Query: 82  DSLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKY 141
           +       +S  T + + +R   A+          WLPPGW +EDRVRTSGATAGTVDKY
Sbjct: 87  NLATTNGTESALTPETASTRRLTATEA--------WLPPGWEIEDRVRTSGATAGTVDKY 146

Query: 142 YFDPVSGRRFRSKIEVLYFLETGTLRKRKK-----SLDGNGTSADGPEEPKNKKSSNNAK 201
           YF   SGRRFRSK EVLYFLETGT RKR+K      +D +G++A      K KK +  AK
Sbjct: 147 YFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAG---STKQKKPNIKAK 206

Query: 202 SAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRS 251
           ++ LNFD+FN PE VEWVLTDPS+ +WTPFI   +VP+S +++W AAF  L+ S
Sbjct: 207 TSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTS 241

[Close]
BLAST of Cp4.1LG20g08550 vs. TrEMBL
Match: A0A0D2SKJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G263700 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.7e-40
Identity = 100/227 (44.05%), Postives = 130/227 (57.27%), Query Frame = 1 

Query: 29  LPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGN 88
           LP DPLL  G+FID +       P+ P  SR+  + +  + ET                 
Sbjct: 12  LPSDPLLKPGAFIDVNGQG---KPAEPTKSRNGLIPNGSQPET----------------- 71

Query: 89  GDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSG 148
              P+   ++ S   D+  K        WLPPGW++EDRVRTSGATAG VDKYY DP SG
Sbjct: 72  ---PSRGSVNSSSSADSKVKRRVVAPETWLPPGWLIEDRVRTSGATAGLVDKYYVDPTSG 131

Query: 149 RRFRSKIEVLYFLETGT---LRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFF 208
           R+FRSK EVLYFLE G+    RK+   L G+   + G   P  K+  +  K  PLNFDF 
Sbjct: 132 RKFRSKKEVLYFLENGSPPPKRKKGTELPGSEVPSTG-NSPGQKQKKSAKKQKPLNFDFI 191

Query: 209 NVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSKA 253
           NVPEKV+W LTD   ++WTPF+ N+ VP+STK++W AAF  L+  K+
Sbjct: 192 NVPEKVDWFLTDACSDSWTPFLGNDLVPESTKQDWAAAFTSLTVKKS 214

[Close]
BLAST of Cp4.1LG20g08550 vs. TrEMBL
Match: A0A061H022_THECC (Methyl-CPG-binding domain protein 5, putative isoform 2 OS=Theobroma cacao GN=TCM_041832 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.8e-40
Identity = 100/225 (44.44%), Postives = 130/225 (57.78%), Query Frame = 1 

Query: 29  LPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGN 88
           L PDPLL +G FID++     + P++P                                N
Sbjct: 12  LTPDPLLKSGLFIDANGQNRSSKPTNP-------------------------------PN 71

Query: 89  GDSP--ATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPV 148
           G SP  A  +   S    A  K        WLP GW++EDRVRTSGATAGTVDKYY DP 
Sbjct: 72  GSSPYGAQPEARSSPLAVAKGKRRVVPPETWLPAGWLVEDRVRTSGATAGTVDKYYVDPS 131

Query: 149 SGRRFRSKIEVLYFLETG-TLRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFF 208
           SGR+FRSK EVLYF+ETG T  KRKK ++ +GT          K+  +  K+ PLNFDF 
Sbjct: 132 SGRKFRSKKEVLYFIETGITPTKRKKGMETSGTEESTGISADTKQRKSEKKTKPLNFDFT 191

Query: 209 NVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRS 251
           NVPEKV+W+LT+ S ++WTPF+ +E+VP+ST+++W AAF  L+ S
Sbjct: 192 NVPEKVDWLLTNASVDSWTPFLGDEQVPESTRQDWAAAFTFLTAS 205

[Close]
BLAST of Cp4.1LG20g08550 vs. TAIR10
Match: AT5G59380.1 (AT5G59380.1 methyl-CPG-binding domain 6)

HSP 1 Score: 138.7 bits (348), Expect = 5.1e-33
Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 1 

Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNG 89
           PPDPLL +G+FI  S+A  GTL SS                     R P +     +G+G
Sbjct: 10  PPDPLLASGAFI--SSAGDGTLDSSAK-------------------RRPIQGGIGISGSG 69

Query: 90  DSPATKKLSGS----RGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDP 149
           +S      +G+      T++  +  ++   NWLPPGW +ED++RTSGATAG+VDKYY++P
Sbjct: 70  ESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEP 129

Query: 150 VSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNA-----KSAPL 209
            +GR+FRS+ EVLY+LE GT ++  K  +    + D  E   + + +  A        PL
Sbjct: 130 NTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPPPPL 189

Query: 210 NFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLS 249
           +FDF N P+KV W + +  +E W P I + KV  S +R+W  AF  ++
Sbjct: 190 DFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFIT 216

[Close]
BLAST of Cp4.1LG20g08550 vs. TAIR10
Match: AT3G46580.1 (AT3G46580.1 methyl-CPG-binding domain protein 5)

HSP 1 Score: 135.2 bits (339), Expect = 5.6e-32
Identity = 75/171 (43.86%), Postives = 98/171 (57.31%), Query Frame = 1 

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
           ++PAT   S SR      K A+    NWLPP W  E RVRTSG  AGTVDK+Y++P++GR
Sbjct: 13  ENPATPVDSKSR------KRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGR 72

Query: 150 RFRSKIEVLYFLETGTLRKRKKSLDGNGTS--------ADGPEEPKNKKSSNNAKSAPLN 209
           +FRSK EVLY+LE GT +K+      NG S             + K+ K        PLN
Sbjct: 73  KFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLN 132

Query: 210 FDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSKA 253
           FDF NVPEKV W   + S+EAW PFI + K+ +S  ++W   F L++   A
Sbjct: 133 FDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVTSQNA 177

[Close]
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: gi|659115288|ref|XP_008457481.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo])

HSP 1 Score: 363.6 bits (932), Expect = 2.8e-97
Identity = 191/257 (74.32%), Postives = 210/257 (81.71%), Query Frame = 1 

Query: 1   MSAFGTSISDPDWPR-RDPTRFNLPFSNHLPPDPLLDAGSFIDSS-----AARCGTLPSS 60
           MSA GTS+ D DWPR  DPTR +LPFS+HLPPDPLL AGSFIDSS     A    T+PS 
Sbjct: 25  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 84

Query: 61  PNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNGDSPATKKLSGSRGTDASPKSASSEK 120
              SRDLD   RK  +TSST RSP R D LN+ NGDS  +KK+S S    AS KSA SE+
Sbjct: 85  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSAS--NSASSKSALSER 144

Query: 121 PNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLD 180
           PNWLPPGW++EDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVLYFLETGTLRKRKKSLD
Sbjct: 145 PNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLD 204

Query: 181 GNGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQ 240
           GN +S DG +EPK KKSS+NAKSAPLNFDFFNVPEKVEWVLTDPSQ+AWTPFI+NEKVP+
Sbjct: 205 GNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPE 264

Query: 241 STKREWVAAFKLLSRSK 252
           STK EWV AF+LL RSK
Sbjct: 265 STKCEWVGAFQLLGRSK 279

[Close]
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: gi|778661468|ref|XP_011658162.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 2.6e-95
Identity = 189/256 (73.83%), Postives = 207/256 (80.86%), Query Frame = 1 

Query: 1   MSAFGTSISDPDWPR-RDPTRFNLPFSNHLPPDPLLDAGSFIDSSAAR----CGTLPSSP 60
           MSA GTS  D DWPR  DPTR +LPFS+HLPPDPLL AGSFIDSS +       T+PS  
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  NHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNGDSPATKKLSGSRGTDASPKSASSEKP 120
             SRDLD   RK   TSST RSP R D LN+ NGDS  +KK+S S    AS KSA SE+P
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSAS--NSASSKSALSERP 143

Query: 121 NWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDG 180
           NWLPPGW++EDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVLYFLETGTLRKRKKSLDG
Sbjct: 144 NWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDG 203

Query: 181 NGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQS 240
           N +S D  EEPK KKSS+NAK+APLNFDFFNVPEKVEWVLTDPSQ+AWTPFI+NEKVP+S
Sbjct: 204 NPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPES 263

Query: 241 TKREWVAAFKLLSRSK 252
           TK EWV AF+LL RSK
Sbjct: 264 TKCEWVGAFQLLGRSK 277

[Close]
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: gi|694375413|ref|XP_009364396.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Pyrus x bretschneideri])

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 104/223 (46.64%), Postives = 138/223 (61.88%), Query Frame = 1 

Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNG 89
           P DPLL  GSFID++     +             N R   +T +  ++P + +   +G G
Sbjct: 32  PHDPLLRPGSFIDATTTATTS-------------NGRTPIQTKNPHKAPQQSNRSESGAG 91

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
                +   G  G  A  K  S    NWLPPGW ++++VR+SG TAG+ D+YYFDPVSGR
Sbjct: 92  ----AESTEGGAGR-AKRKGVSEPLENWLPPGWSVQEKVRSSGLTAGSTDRYYFDPVSGR 151

Query: 150 RFRSKIEVLYFLETGTLRKRK-KSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVP 209
           RFRSKIEVL FLETGT +K K ++   + TS +G    K KKSS   K++ LNFD+ +VP
Sbjct: 152 RFRSKIEVLRFLETGTAKKAKTENASADKTSVEGSGSQKQKKSSTKPKNSALNFDYTDVP 211

Query: 210 EKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSK 252
           EKVEW LTD S ++WTPFI+N+KVP+ST +EW AAF L+   K
Sbjct: 212 EKVEWALTDSSGQSWTPFIDNKKVPESTSKEWAAAFALVPSKK 236

[Close]
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: gi|657952374|ref|XP_008357235.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Malus domestica])

HSP 1 Score: 184.9 bits (468), Expect = 1.8e-43
Identity = 104/223 (46.64%), Postives = 137/223 (61.43%), Query Frame = 1 

Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNG 89
           P DPLL  GSFID++     +             N R   +T +  ++P + +    G G
Sbjct: 32  PHDPLLRPGSFIDATTTATTS-------------NGRTPIQTKNPHKAPQQSNRSEPGAG 91

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
                +   G  G  A  K  S    NWLPPGW ++++VR+SG TAG+ D+YYFDPVSGR
Sbjct: 92  ----AESTEGGAGR-AKRKGVSEPLENWLPPGWSVQEKVRSSGLTAGSTDRYYFDPVSGR 151

Query: 150 RFRSKIEVLYFLETGTLRKRK-KSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVP 209
           RFRSKIEVL FLETGT +K K ++   + TS +G    K KKSS   K++ LNFD+ +VP
Sbjct: 152 RFRSKIEVLRFLETGTTKKAKTENASADKTSVEGSGSQKQKKSSTKPKNSALNFDYTDVP 211

Query: 210 EKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSK 252
           EKVEW LTD S ++WTPFI+N+KVP+ST +EW AAF L+   K
Sbjct: 212 EKVEWALTDSSGQSWTPFIDNKKVPESTSKEWAAAFALVPSKK 236

[Close]
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match: gi|567864370|ref|XP_006424834.1| (hypothetical protein CICLE_v10029152mg [Citrus clementina])

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 109/234 (46.58%), Postives = 144/234 (61.54%), Query Frame = 1 

Query: 22  NLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRD 81
           NL  + ++PPDPLLD+G FID++        S  N +   D   +K+     T+R    +
Sbjct: 27  NLFSTVNVPPDPLLDSGFFIDAAPPAT----SGSNTTTTNDQTSKKRG----TIREHKSE 86

Query: 82  DSLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKY 141
           +       +S  T + + +R   A+          WLPPGW +EDRVRTSGATAGTVDKY
Sbjct: 87  NLATTNGTESALTPETASTRRLTATEA--------WLPPGWEIEDRVRTSGATAGTVDKY 146

Query: 142 YFDPVSGRRFRSKIEVLYFLETGTLRKRKK-----SLDGNGTSADGPEEPKNKKSSNNAK 201
           YF   SGRRFRSK EVLYFLETGT RKR+K      +D +G++A      K KK +  AK
Sbjct: 147 YFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAG---STKQKKPNIKAK 206

Query: 202 SAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRS 251
           ++ LNFD+FN PE VEWVLTDPS+ +WTPFI   +VP+S +++W AAF  L+ S
Sbjct: 207 TSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTS 241

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g08550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MBD6_ARATH9.0e-3236.84Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 P... [more]
MBD5_ARATH1.0e-3043.86Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 P... [more]
BLAST of Cp4.1LG20g08550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXE4_CUCSA1.8e-9573.83Uncharacterized protein OS=Cucumis sativus GN=Csa_1G522010 PE=4 SV=1[more]
A0A067G387_CITSI2.1e-4346.58Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045019mg PE=4 SV=1[more]
V4UFH3_9ROSI2.1e-4346.58Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029152mg PE=4 SV=1[more]
A0A0D2SKJ0_GOSRA3.7e-4044.05Uncharacterized protein OS=Gossypium raimondii GN=B456_013G263700 PE=4 SV=1[more]
A0A061H022_THECC4.8e-4044.44Methyl-CPG-binding domain protein 5, putative isoform 2 OS=Theobroma cacao GN=TC... [more]
BLAST of Cp4.1LG20g08550 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59380.15.1e-3336.84 methyl-CPG-binding domain 6[more]
AT3G46580.15.6e-3243.86 methyl-CPG-binding domain protein 5[more]
BLAST of Cp4.1LG20g08550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115288|ref|XP_008457481.1|2.8e-9774.32PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo][more]
gi|778661468|ref|XP_011658162.1|2.6e-9573.83PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Cucumis sativus][more]
gi|694375413|ref|XP_009364396.1|1.0e-4346.64PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Pyrus x bretschn... [more]
gi|657952374|ref|XP_008357235.1|1.8e-4346.64PREDICTED: methyl-CpG-binding domain-containing protein 5 [Malus domestica][more]
gi|567864370|ref|XP_006424834.1|3.0e-4346.58hypothetical protein CICLE_v10029152mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR001739Methyl_CpG_DNA-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g08550.1Cp4.1LG20g08550.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001739Methyl-CpG DNA bindingGENE3DG3DSA:3.30.890.10coord: 110..163
score: 9.0
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 110..210
score: 8.2
IPR001739Methyl-CpG DNA bindingPROFILEPS50982MBDcoord: 108..180
score: 14
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 109..164
score: 3.92
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 116..251
score: 1.2
NoneNo IPR availablePANTHERPTHR12396:SF11METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 5-RELATEDcoord: 116..251
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g08550Cucsa.117890Cucumber (Gy14) v1cgycpeB0283
Cp4.1LG20g08550CmaCh13G001260Cucurbita maxima (Rimu)cmacpeB235
Cp4.1LG20g08550CmaCh01G006070Cucurbita maxima (Rimu)cmacpeB483
Cp4.1LG20g08550CmoCh01G006300Cucurbita moschata (Rifu)cmocpeB441
Cp4.1LG20g08550CmoCh13G001230Cucurbita moschata (Rifu)cmocpeB202
Cp4.1LG20g08550Cla008238Watermelon (97103) v1cpewmB507
Cp4.1LG20g08550Csa1G522010Cucumber (Chinese Long) v2cpecuB507
Cp4.1LG20g08550MELO3C020629Melon (DHL92) v3.5.1cpemeB479
Cp4.1LG20g08550ClCG03G001470Watermelon (Charleston Gray)cpewcgB467
Cp4.1LG20g08550CSPI01G23100Wild cucumber (PI 183967)cpecpiB507
Cp4.1LG20g08550Lsi02G013560Bottle gourd (USVL1VR-Ls)cpelsiB422
Cp4.1LG20g08550MELO3C020629.2Melon (DHL92) v3.6.1cpemedB561
Cp4.1LG20g08550CsaV3_1G034280Cucumber (Chinese Long) v3cpecucB0625
Cp4.1LG20g08550Bhi08G000518Wax gourdcpewgoB0650
Cp4.1LG20g08550CsGy1G022630Cucumber (Gy14) v2cgybcpeB071
Cp4.1LG20g08550Carg12373Silver-seed gourdcarcpeB0620
Cp4.1LG20g08550Carg20656Silver-seed gourdcarcpeB0531
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g08550Cp4.1LG02g13350Cucurbita pepo (Zucchini)cpecpeB432
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g08550Silver-seed gourdcarcpeB0228
Cp4.1LG20g08550Silver-seed gourdcarcpeB0469
Cp4.1LG20g08550Cucumber (Chinese Long) v3cpecucB0645
Cp4.1LG20g08550Cucumber (Chinese Long) v3cpecucB0653
Cp4.1LG20g08550Wax gourdcpewgoB0628
Cp4.1LG20g08550Cucurbita pepo (Zucchini)cpecpeB296
Cp4.1LG20g08550Cucurbita pepo (Zucchini)cpecpeB386
Cp4.1LG20g08550Cucurbita pepo (Zucchini)cpecpeB388
Cp4.1LG20g08550Cucurbita pepo (Zucchini)cpecpeB413
Cp4.1LG20g08550Cucurbita pepo (Zucchini)cpecpeB439
Cp4.1LG20g08550Cucurbita pepo (Zucchini)cpecpeB444
Cp4.1LG20g08550Cucurbita pepo (Zucchini)cpecpeB447
Cp4.1LG20g08550Cucurbita maxima (Rimu)cmacpeB636
Cp4.1LG20g08550Cucurbita moschata (Rifu)cmocpeB586
Cp4.1LG20g08550Bottle gourd (USVL1VR-Ls)cpelsiB412
Cp4.1LG20g08550Bottle gourd (USVL1VR-Ls)cpelsiB414
Cp4.1LG20g08550Watermelon (Charleston Gray)cpewcgB462
Cp4.1LG20g08550Watermelon (97103) v1cpewmB526
Cp4.1LG20g08550Melon (DHL92) v3.5.1cpemeB468
Cp4.1LG20g08550Cucumber (Gy14) v2cgybcpeB536
Cp4.1LG20g08550Cucumber (Gy14) v2cgybcpeB669
Cp4.1LG20g08550Cucumber (Gy14) v2cgybcpeB817
Cp4.1LG20g08550Cucumber (Gy14) v2cgybcpeB818
Cp4.1LG20g08550Melon (DHL92) v3.6.1cpemedB551
Cp4.1LG20g08550Melon (DHL92) v3.6.1cpemedB571