Carg12373 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGGTGAATTGATTCCTTCTCTTATGCCTTCAATCCTTTACGAATGTTCCATTTCTTAGTTCATTCTCTTGTCTGGTGGTTCTGAGGAATATGTTTTGGTAATTAATCGACCATGCAAGTATTAGTCTATGCCTCTGGCTACTGACCTTTTTCTCTGCAATTTTATGTTTGACGATAGAACAGGGTCTTACTGTCTTTTATTATTATTATTTTTTCTTTCTACTCTACCTGTTTGACAATCGGTTTAGAATTTTCAACCAGTAATGGATGATTTTTTGTGGTACTGTTACGTTTACTCCTACTGCGTTGGAAACCTCGGATAAGAACATGAACCAATCAGAAGAAATGCTCATTGATTACCGAAAATGATCTTTTGTTTTTGCCTTAAAGGGTTGGTTGTACCATTCCTTCTCAGTTGTTCTCCTATCAATTCTGGAAAGAAAGAGTTATATCAAGTAGTAAGGATTTAGTAACATTCTGGATGGGTGATCATCTGAAAAATGGATCACTAGCTAAACTCTGTTATATTGATGGATACTGCAGTTTTAGTTACCTATTTGGTGATTAAAAAGTTCAATAGGAGCAAGTAAACTAAAGGGATTCATTTCATCCACATGGTCAGGGGTCTTCCGTAGATTTGTTGGAGTTTTTTTGTCCTCTATTTGGTATGGCATTTAATTATGTTCATGTCCTTGCTTTTGAATCAGCTTATTTGACAATCCAAGCAATTCTGTCTCGCAGTTACTTAGAACAAACTTTCTTGGTATTTTTCTCTGGATAGTGAACAAGACTCCACGAACTTTGATATAGATTAGGTGCTTCTTTGGATTTTAGTATTCTAGCTAACTTTGCACTTATATGAATTCAATTAGCATAGCAGAGTTTGGTTGTTAGGATGGAGACCATTGGAAAAAGCTTTACACAAACCTCCACTGCTGTGTTGATAACCAGTTCATAAATGGTCTGGGTCGAATTTGTAGAATAATGTTCATCATTTGATCTCTCCTTGCGTTTTGGTGAATAGCTTTGGACTCGATATTTGTAGATTTCAAATGCTCTTGCTGGAATCGTGCACCTCATACGATATGTGGCTGGTGCTTTGTGCTTGGCGTATGATGCTTCACTAATTGTCATGTTTGAGATGGGTTCTACCTTAGTTTTGTATTCATGAGTAGCTTTGTTTAAAACCATATTCACATTGCTGATAGACAAAACAAGTGCAAGCAATCAAGTACGGTCACAAGTACCATCTAGCATTTAATTATTGAGAAAGAGTTCGTATGGAAATTTGCTTATGAATTGAGTTCCTTTCTCTTTTTTCCTTTTGTTTTTGTCATGTCGTTCTGAATTAATTGTGAGCATGCTTGGGCCCCATTTATTACTTGAGGTTCCCCTTTCCTTTTATTCCGTTTTAAATGTTTATTGAACAAACAAACAGAAAAGAATGTTGAGAAAAATCTAATATCCCCATGTCCCTTGCAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACGTGAGTCGAAAGCTAACACTCCTTCTTTTTAGCACCAAATAGATATTCAGATCTTCTCATCAATTTTTCACTTTTACTGATTTGCAACTCTGCAGTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLLGRSKV
BLAST of Carg12373 vs. NCBI nr
Match: XP_022948611.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 461.8 bits (1187), Expect = 1.5e-126 Identity = 230/260 (88.46%), Postives = 231/260 (88.85%), Query Frame = 0
BLAST of Carg12373 vs. NCBI nr
Match: XP_023523162.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 458.4 bits (1178), Expect = 1.7e-125 Identity = 229/260 (88.08%), Postives = 229/260 (88.08%), Query Frame = 0
BLAST of Carg12373 vs. NCBI nr
Match: XP_022948610.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 456.8 bits (1174), Expect = 4.8e-125 Identity = 230/262 (87.79%), Postives = 231/262 (88.17%), Query Frame = 0
BLAST of Carg12373 vs. NCBI nr
Match: XP_022998336.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 443.0 bits (1138), Expect = 7.2e-121 Identity = 247/260 (95.00%), Postives = 247/260 (95.00%), Query Frame = 0
BLAST of Carg12373 vs. NCBI nr
Match: XP_022998335.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 438.0 bits (1125), Expect = 2.3e-119 Identity = 247/262 (94.27%), Postives = 247/262 (94.27%), Query Frame = 0
BLAST of Carg12373 vs. TAIR10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5) HSP 1 Score: 130.2 bits (326), Expect = 1.9e-30 Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 0
BLAST of Carg12373 vs. TAIR10
Match: AT5G59380.1 (methyl-CPG-binding domain 6) HSP 1 Score: 117.9 bits (294), Expect = 9.6e-27 Identity = 78/234 (33.33%), Postives = 107/234 (45.73%), Query Frame = 0
BLAST of Carg12373 vs. Swiss-Prot
Match: sp|Q9SNC0|MBD5_ARATH (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 3.4e-29 Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 0
BLAST of Carg12373 vs. Swiss-Prot
Match: sp|Q9LTJ1|MBD6_ARATH (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25 Identity = 78/234 (33.33%), Postives = 107/234 (45.73%), Query Frame = 0
BLAST of Carg12373 vs. Swiss-Prot
Match: sp|Q9UBB5|MBD2_HUMAN (Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 6.4e-04 Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 0
BLAST of Carg12373 vs. Swiss-Prot
Match: sp|Q9Z2E1|MBD2_MOUSE (Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2) HSP 1 Score: 46.2 bits (108), Expect = 6.4e-04 Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 0
BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A0A0LXE4|A0A0A0LXE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV=1) HSP 1 Score: 341.3 bits (874), Expect = 1.9e-90 Identity = 188/267 (70.41%), Postives = 197/267 (73.78%), Query Frame = 0
BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A1S3C6A2|A0A1S3C6A2_CUCME (methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103497158 PE=4 SV=1) HSP 1 Score: 339.7 bits (870), Expect = 5.7e-90 Identity = 186/268 (69.40%), Postives = 194/268 (72.39%), Query Frame = 0
BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A2I4E7N3|A0A2I4E7N3_9ROSI (methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN=LOC108987020 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 2.1e-44 Identity = 114/257 (44.36%), Postives = 149/257 (57.98%), Query Frame = 0
BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A2I4EUW9|A0A2I4EUW9_9ROSI (methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN=LOC108992930 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40 Identity = 109/248 (43.95%), Postives = 138/248 (55.65%), Query Frame = 0
BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A251NLR4|A0A251NLR4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G076700 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 2.4e-40 Identity = 110/254 (43.31%), Postives = 136/254 (53.54%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |