Carg12373 (gene) Silver-seed gourd

NameCarg12373
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionmethyl-CpG-binding domain-containing protein 5
LocationCucurbita_argyrosperma_scaffold_074 : 619743 .. 622099 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGGTGAATTGATTCCTTCTCTTATGCCTTCAATCCTTTACGAATGTTCCATTTCTTAGTTCATTCTCTTGTCTGGTGGTTCTGAGGAATATGTTTTGGTAATTAATCGACCATGCAAGTATTAGTCTATGCCTCTGGCTACTGACCTTTTTCTCTGCAATTTTATGTTTGACGATAGAACAGGGTCTTACTGTCTTTTATTATTATTATTTTTTCTTTCTACTCTACCTGTTTGACAATCGGTTTAGAATTTTCAACCAGTAATGGATGATTTTTTGTGGTACTGTTACGTTTACTCCTACTGCGTTGGAAACCTCGGATAAGAACATGAACCAATCAGAAGAAATGCTCATTGATTACCGAAAATGATCTTTTGTTTTTGCCTTAAAGGGTTGGTTGTACCATTCCTTCTCAGTTGTTCTCCTATCAATTCTGGAAAGAAAGAGTTATATCAAGTAGTAAGGATTTAGTAACATTCTGGATGGGTGATCATCTGAAAAATGGATCACTAGCTAAACTCTGTTATATTGATGGATACTGCAGTTTTAGTTACCTATTTGGTGATTAAAAAGTTCAATAGGAGCAAGTAAACTAAAGGGATTCATTTCATCCACATGGTCAGGGGTCTTCCGTAGATTTGTTGGAGTTTTTTTGTCCTCTATTTGGTATGGCATTTAATTATGTTCATGTCCTTGCTTTTGAATCAGCTTATTTGACAATCCAAGCAATTCTGTCTCGCAGTTACTTAGAACAAACTTTCTTGGTATTTTTCTCTGGATAGTGAACAAGACTCCACGAACTTTGATATAGATTAGGTGCTTCTTTGGATTTTAGTATTCTAGCTAACTTTGCACTTATATGAATTCAATTAGCATAGCAGAGTTTGGTTGTTAGGATGGAGACCATTGGAAAAAGCTTTACACAAACCTCCACTGCTGTGTTGATAACCAGTTCATAAATGGTCTGGGTCGAATTTGTAGAATAATGTTCATCATTTGATCTCTCCTTGCGTTTTGGTGAATAGCTTTGGACTCGATATTTGTAGATTTCAAATGCTCTTGCTGGAATCGTGCACCTCATACGATATGTGGCTGGTGCTTTGTGCTTGGCGTATGATGCTTCACTAATTGTCATGTTTGAGATGGGTTCTACCTTAGTTTTGTATTCATGAGTAGCTTTGTTTAAAACCATATTCACATTGCTGATAGACAAAACAAGTGCAAGCAATCAAGTACGGTCACAAGTACCATCTAGCATTTAATTATTGAGAAAGAGTTCGTATGGAAATTTGCTTATGAATTGAGTTCCTTTCTCTTTTTTCCTTTTGTTTTTGTCATGTCGTTCTGAATTAATTGTGAGCATGCTTGGGCCCCATTTATTACTTGAGGTTCCCCTTTCCTTTTATTCCGTTTTAAATGTTTATTGAACAAACAAACAGAAAAGAATGTTGAGAAAAATCTAATATCCCCATGTCCCTTGCAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACGTGAGTCGAAAGCTAACACTCCTTCTTTTTAGCACCAAATAGATATTCAGATCTTCTCATCAATTTTTCACTTTTACTGATTTGCAACTCTGCAGTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

mRNA sequence

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

Coding sequence (CDS)

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

Protein sequence

MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLLGRSKV
BLAST of Carg12373 vs. NCBI nr
Match: XP_022948611.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 461.8 bits (1187), Expect = 1.5e-126
Identity = 230/260 (88.46%), Postives = 231/260 (88.85%), Query Frame = 0

Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDGNHRNKPDTSATLRSPLP DPLNPKKLPPD                           A
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSK+
Sbjct: 241 PESTKREWVAAFQLLGRSKI 260

BLAST of Carg12373 vs. NCBI nr
Match: XP_023523162.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458.4 bits (1178), Expect = 1.7e-125
Identity = 229/260 (88.08%), Postives = 229/260 (88.08%), Query Frame = 0

Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDG HR KPDTSATLRSPLP DPLNPKKLPPD                           A
Sbjct: 61  LDGTHRKKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEVWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

BLAST of Carg12373 vs. NCBI nr
Match: XP_022948610.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 456.8 bits (1174), Expect = 4.8e-125
Identity = 230/262 (87.79%), Postives = 231/262 (88.17%), Query Frame = 0

Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDGNHRNKPDTSATLRSPLP DPLNPKKLPPD                           A
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 261
           KVPESTKREWVAAFQLLGRSK+
Sbjct: 241 KVPESTKREWVAAFQLLGRSKI 262

BLAST of Carg12373 vs. NCBI nr
Match: XP_022998336.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 443.0 bits (1138), Expect = 7.2e-121
Identity = 247/260 (95.00%), Postives = 247/260 (95.00%), Query Frame = 0

Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDGNHR KPDTSATLRSPLP DPLNPKKL PD   XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
                 WLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 XXXXXXWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

BLAST of Carg12373 vs. NCBI nr
Match: XP_022998335.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 438.0 bits (1125), Expect = 2.3e-119
Identity = 247/262 (94.27%), Postives = 247/262 (94.27%), Query Frame = 0

Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDGNHR KPDTSATLRSPLP DPLNPKKL PD   XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
                 WLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 XXXXXXWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 261
           KVPESTKREWVAAFQLLGRSKV
Sbjct: 241 KVPESTKREWVAAFQLLGRSKV 262

BLAST of Carg12373 vs. TAIR10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-30
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 0

Query: 126 NWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDG 185
           NWLPP W  E RVR SG  AGTVDK+Y++P +GR+FRSK EVLY+LE GT +K+      
Sbjct: 33  NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAE 92

Query: 186 NSADGSE----------EPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 245
           N    SE          + KS K  +     PLNFDF NVPEKV W   + S+EAW PFI
Sbjct: 93  NGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFI 152

Query: 246 NNEKVPESTKREWVAAFQLL 256
            + K+ ES  ++W   F L+
Sbjct: 153 GDYKIQESVSQDWDRVFTLV 172

BLAST of Carg12373 vs. TAIR10
Match: AT5G59380.1 (methyl-CPG-binding domain 6)

HSP 1 Score: 117.9 bits (294), Expect = 9.6e-27
Identity = 78/234 (33.33%), Postives = 107/234 (45.73%), Query Frame = 0

Query: 29  FPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKK 88
           FPPDPLL+SG+FI  S+A  GTL SS        G   +    S  +      D +N + 
Sbjct: 9   FPPDPLLASGAFI--SSAGDGTLDSSAKRRPIQGGIGISGSGESVRIGMANGTDQVNHQ- 68

Query: 89  LPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXALSERPNWLPPGWVVEDRVRASGATAGTV 148
                                            +   NWLPPGW VED++R SGATAG+V
Sbjct: 69  ------------------------TESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSV 128

Query: 149 DKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN-------SADGSEEPKSKKSSS 208
           DKYY++PN+GR+FRS+ EVLY+LE GT ++  K  +            GS          
Sbjct: 129 DKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTXXXXXX 188

Query: 209 NAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLL 256
                       N P+KV W + +  +E W P I + KV +S +R+W  AF  +
Sbjct: 189 XXXXXXXXXXXKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

BLAST of Carg12373 vs. Swiss-Prot
Match: sp|Q9SNC0|MBD5_ARATH (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-29
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 0

Query: 126 NWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDG 185
           NWLPP W  E RVR SG  AGTVDK+Y++P +GR+FRSK EVLY+LE GT +K+      
Sbjct: 33  NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAE 92

Query: 186 NSADGSE----------EPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 245
           N    SE          + KS K  +     PLNFDF NVPEKV W   + S+EAW PFI
Sbjct: 93  NGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFI 152

Query: 246 NNEKVPESTKREWVAAFQLL 256
            + K+ ES  ++W   F L+
Sbjct: 153 GDYKIQESVSQDWDRVFTLV 172

BLAST of Carg12373 vs. Swiss-Prot
Match: sp|Q9LTJ1|MBD6_ARATH (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25
Identity = 78/234 (33.33%), Postives = 107/234 (45.73%), Query Frame = 0

Query: 29  FPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKK 88
           FPPDPLL+SG+FI  S+A  GTL SS        G   +    S  +      D +N + 
Sbjct: 9   FPPDPLLASGAFI--SSAGDGTLDSSAKRRPIQGGIGISGSGESVRIGMANGTDQVNHQ- 68

Query: 89  LPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXALSERPNWLPPGWVVEDRVRASGATAGTV 148
                                            +   NWLPPGW VED++R SGATAG+V
Sbjct: 69  ------------------------TESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSV 128

Query: 149 DKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN-------SADGSEEPKSKKSSS 208
           DKYY++PN+GR+FRS+ EVLY+LE GT ++  K  +            GS          
Sbjct: 129 DKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTXXXXXX 188

Query: 209 NAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLL 256
                       N P+KV W + +  +E W P I + KV +S +R+W  AF  +
Sbjct: 189 XXXXXXXXXXXKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

BLAST of Carg12373 vs. Swiss-Prot
Match: sp|Q9UBB5|MBD2_HUMAN (Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.4e-04
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 0

Query: 128 LPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGNS 187
           LPPGW  E+ +R SG +AG  D YYF P SG++FRSK ++  +L          ++D +S
Sbjct: 155 LPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL--------GNTVDLSS 214

Query: 188 AD---GSEEP-KSKKSSSNAKSAPLN 210
            D   G   P K +K+    ++ PLN
Sbjct: 215 FDFRTGKMMPSKLQKNKQRLRNDPLN 231

BLAST of Carg12373 vs. Swiss-Prot
Match: sp|Q9Z2E1|MBD2_MOUSE (Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 6.4e-04
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 0

Query: 128 LPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGNS 187
           LPPGW  E+ +R SG +AG  D YYF P SG++FRSK ++  +L          ++D +S
Sbjct: 158 LPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL--------GNAVDLSS 217

Query: 188 AD---GSEEP-KSKKSSSNAKSAPLN 210
            D   G   P K +K+    ++ PLN
Sbjct: 218 FDFRTGKMMPSKLQKNKQRLRNDPLN 234

BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A0A0LXE4|A0A0A0LXE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.9e-90
Identity = 188/267 (70.41%), Postives = 197/267 (73.78%), Query Frame = 0

Query: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTA----RCGTLPSSP 60
           MSASGTSFPD DWPR    TRPDLP  HH PPDPLLS+GSFIDSST+       T+PS  
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  DYARDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXX 120
             +RDLD   R  P TS+T RSPL PDPLN                              
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLN------------SFNGDSSPSKKVSASNSA 143

Query: 121 XXXXALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGT 180
               ALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGT
Sbjct: 144 SSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGT 203

Query: 181 LRKRKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTP 240
           LRKRKKSLDGN  S D SEEPK KKSSSNAK+APLNFDFFNVPEKVEWVLTDPSQ+AWTP
Sbjct: 204 LRKRKKSLDGNPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTP 263

Query: 241 FINNEKVPESTKREWVAAFQLLGRSKV 261
           FI+NEKVPESTK EWV AFQLLGRSKV
Sbjct: 264 FIDNEKVPESTKCEWVGAFQLLGRSKV 278

BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A1S3C6A2|A0A1S3C6A2_CUCME (methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103497158 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 5.7e-90
Identity = 186/268 (69.40%), Postives = 194/268 (72.39%), Query Frame = 0

Query: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS----- 60
           MSASGTS PD DWPR    TRPDLP  HH PPDPLLS+GSFIDSS++     P S     
Sbjct: 24  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVXXX 83

Query: 61  PDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXX 120
               RDLD   R  P TS+T RSPL PDPLN                             
Sbjct: 84  XXXXRDLDRTPRKTPQTSSTRRSPLRPDPLN------------SFNGDSSPSKKVSASNS 143

Query: 121 XXXXXALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETG 180
                ALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETG
Sbjct: 144 ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETG 203

Query: 181 TLRKRKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWT 240
           TLRKRKKSLDGN  S DGS+EPK KKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQ+AWT
Sbjct: 204 TLRKRKKSLDGNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWT 263

Query: 241 PFINNEKVPESTKREWVAAFQLLGRSKV 261
           PFI+NEKVPESTK EWV AFQLLGRSKV
Sbjct: 264 PFIDNEKVPESTKCEWVGAFQLLGRSKV 279

BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A2I4E7N3|A0A2I4E7N3_9ROSI (methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN=LOC108987020 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.1e-44
Identity = 114/257 (44.36%), Postives = 149/257 (57.98%), Query Frame = 0

Query: 1   MSASGTSFPDPDWP--RQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60
           MS+ G   P+P W   ++   RP+       P DPLL SGSFI+++ +       +P   
Sbjct: 1   MSSLGQD-PNPHWNSLKRYPNRPEEVLTAGLPSDPLLKSGSFIEATASGRQGTAETPRMR 60

Query: 61  RDLDG-NHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXX 120
           R  DG +     + S    +PLP +  +P                               
Sbjct: 61  RSSDGASPSMASEKSNGAETPLPENTASP-------------------------AGAQQR 120

Query: 121 XXALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLR 180
             A +  P+WLPPGW+VEDRVR+SGA+AG +D+Y+F+P SGRRFRSK EVLYFLETGT R
Sbjct: 121 RVAAAPLPDWLPPGWLVEDRVRSSGASAGVIDRYFFEPVSGRRFRSKNEVLYFLETGTKR 180

Query: 181 KRKKSLDGNSAD--GSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240
           K+ K  + + AD  GSE  K KKS++ AKS+ L FD+ NVPEKV+WVLTD SQ +W P+I
Sbjct: 181 KKGKLGENSDADTMGSEGQKEKKSATKAKSSALKFDYLNVPEKVQWVLTDSSQGSWAPYI 231

Query: 241 NNEKVPESTKREWVAAF 253
             EKVPEST +EW AAF
Sbjct: 241 GEEKVPESTMQEWAAAF 231

BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A2I4EUW9|A0A2I4EUW9_9ROSI (methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN=LOC108992930 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 109/248 (43.95%), Postives = 138/248 (55.65%), Query Frame = 0

Query: 9   PDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFID-SSTARCGTLPSSPDYARDLDGNHRN 68
           P+P  P++  +RP        P DPLL  GS+ID ++T R GT  S     R  D +  +
Sbjct: 10  PNPKSPKRDPSRPGKSLSAELPSDPLLRPGSYIDATATGRDGT-ASMLGMRRSSDSSSPS 69

Query: 69  -KPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXALSERPN 128
               TS  + +P P    +P                                 A +  P+
Sbjct: 70  LASKTSNGVATPFPESTESP-------------------------AGAQQRRGAAAALPD 129

Query: 129 WLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN 188
           WLPPGW +EDR R SGA+AG +D+Y+ DP SG RFRSK EV +FLETGT RKR K ++ +
Sbjct: 130 WLPPGWKIEDRARISGASAGMIDRYFLDPVSGHRFRSKKEVFFFLETGTKRKRGKVMENS 189

Query: 189 SAD--GSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPEST 248
            AD  GSE  K KKS   +KS+   FDFFNVPEKVEWVLTD +Q +W PFI +EKV EST
Sbjct: 190 DADALGSEGQKPKKSGMKSKSSASKFDFFNVPEKVEWVLTDTTQGSWAPFIGDEKVSEST 231

Query: 249 KREWVAAF 253
            +EW AAF
Sbjct: 250 MQEWSAAF 231

BLAST of Carg12373 vs. TrEMBL
Match: tr|A0A251NLR4|A0A251NLR4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G076700 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.4e-40
Identity = 110/254 (43.31%), Postives = 136/254 (53.54%), Query Frame = 0

Query: 7   SFPD--PDWP--RQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLD 66
           S PD  P++P  R G+   D+      PPDPLL  GSFID++T                 
Sbjct: 16  STPDRRPNYPDYRAGTLNSDI------PPDPLLRPGSFIDATTR---------------T 75

Query: 67  GNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXALS 126
            N +N  +               P++ P                              + 
Sbjct: 76  SNGQNVKEAQ------------KPRRAPEQSKCAEPATSGSGMENPDGGAGRVKRKGFVE 135

Query: 127 ERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK-- 186
              NWLP GW VE+RVRASGATAG+ D+YY DP SGRRFRSK+EVLYFLETGT++++K  
Sbjct: 136 PLENWLPQGWSVEERVRASGATAGSTDRYYVDPVSGRRFRSKVEVLYFLETGTIKRKKTT 195

Query: 187 --KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 246
              S D  S +GS   K KKSS+  KS+ LNFDF NVPE V WVLTD S  +WTPFI N+
Sbjct: 196 ENASGDKTSVEGSGSHKQKKSSTKPKSSALNFDFVNVPENVVWVLTDSSAGSWTPFIGNK 236

Query: 247 KVPESTKREWVAAF 253
           +VPEST +EW AAF
Sbjct: 256 EVPESTTQEWAAAF 236

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022948611.11.5e-12688.46methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moscha... [more]
XP_023523162.11.7e-12588.08methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo][more]
XP_022948610.14.8e-12587.79methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moscha... [more]
XP_022998336.17.2e-12195.00methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita maxima... [more]
XP_022998335.12.3e-11994.27methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima... [more]
Match NameE-valueIdentityDescription
AT3G46580.11.9e-3047.86methyl-CPG-binding domain protein 5[more]
AT5G59380.19.6e-2733.33methyl-CPG-binding domain 6[more]
Match NameE-valueIdentityDescription
sp|Q9SNC0|MBD5_ARATH3.4e-2947.86Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q9LTJ1|MBD6_ARATH1.7e-2533.33Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q9UBB5|MBD2_HUMAN6.4e-0438.37Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1[more]
sp|Q9Z2E1|MBD2_MOUSE6.4e-0438.37Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LXE4|A0A0A0LXE4_CUCSA1.9e-9070.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV=1[more]
tr|A0A1S3C6A2|A0A1S3C6A2_CUCME5.7e-9069.40methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A2I4E7N3|A0A2I4E7N3_9ROSI2.1e-4444.36methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN... [more]
tr|A0A2I4EUW9|A0A2I4EUW9_9ROSI1.1e-4043.95methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN... [more]
tr|A0A251NLR4|A0A251NLR4_PRUPE2.4e-4043.31Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G076700 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR001739Methyl_CpG_DNA-bd
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12373-RACarg12373-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.890.10coord: 96..209
e-value: 2.8E-20
score: 74.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..207
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 124..234
NoneNo IPR availablePANTHERPTHR12396:SF11METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 5-RELATEDcoord: 124..234
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 121..218
e-value: 1.6E-14
score: 53.2
IPR001739Methyl-CpG DNA bindingPROSITEPS50982MBDcoord: 118..190
score: 15.109
IPR016177DNA-binding domain superfamilySUPERFAMILYSSF54171DNA-binding domaincoord: 112..175

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12373Carg20656Silver-seed gourdcarcarB408
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12373Silver-seed gourdcarcarB192
Carg12373Silver-seed gourdcarcarB332
Carg12373Silver-seed gourdcarcarB353
Carg12373Silver-seed gourdcarcarB449
Carg12373Cucumber (Gy14) v2carcgybB0453
Carg12373Cucumber (Gy14) v2carcgybB0452
Carg12373Cucumber (Gy14) v2carcgybB0450
Carg12373Cucumber (Gy14) v1carcgyB0510
Carg12373Cucurbita maxima (Rimu)carcmaB0612
Carg12373Cucurbita maxima (Rimu)carcmaB0615
Carg12373Cucurbita maxima (Rimu)carcmaB0618
Carg12373Cucurbita moschata (Rifu)carcmoB0595
Carg12373Cucurbita moschata (Rifu)carcmoB0598
Carg12373Cucurbita moschata (Rifu)carcmoB0601
Carg12373Cucurbita pepo (Zucchini)carcpeB0617
Carg12373Cucurbita pepo (Zucchini)carcpeB0619
Carg12373Cucurbita pepo (Zucchini)carcpeB0624
Carg12373Wild cucumber (PI 183967)carcpiB0481
Carg12373Wild cucumber (PI 183967)carcpiB0478
Carg12373Cucumber (Chinese Long) v2carcuB0473
Carg12373Cucumber (Chinese Long) v2carcuB0475
Carg12373Cucumber (Chinese Long) v3carcucB0475
Carg12373Cucumber (Chinese Long) v3carcucB0477
Carg12373Melon (DHL92) v3.5.1carmeB0446
Carg12373Bottle gourd (USVL1VR-Ls)carlsiB400
Carg12373Bottle gourd (USVL1VR-Ls)carlsiB405
Carg12373Melon (DHL92) v3.5.1carmeB0450
Carg12373Melon (DHL92) v3.6.1carmedB0448
Carg12373Melon (DHL92) v3.6.1carmedB0453
Carg12373Watermelon (Charleston Gray)carwcgB0431
Carg12373Watermelon (Charleston Gray)carwcgB0435
Carg12373Watermelon (97103) v1carwmB0438
Carg12373Watermelon (97103) v1carwmB0441
Carg12373Watermelon (97103) v1carwmB0444
Carg12373Watermelon (97103) v2carwmbB0463
Carg12373Watermelon (97103) v2carwmbB0466
Carg12373Wax gourdcarwgoB0529