Carg12373-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12373-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	methyl-CpG-binding domain-containing protein 5
Location	Cucurbita_argyrosperma_scaffold_074 : 619743 .. 622099 (+)
Sequence length	783

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGGTGAATTGATTCCTTCTCTTATGCCTTCAATCCTTTACGAATGTTCCATTTCTTAGTTCATTCTCTTGTCTGGTGGTTCTGAGGAATATGTTTTGGTAATTAATCGACCATGCAAGTATTAGTCTATGCCTCTGGCTACTGACCTTTTTCTCTGCAATTTTATGTTTGACGATAGAACAGGGTCTTACTGTCTTTTATTATTATTATTTTTTCTTTCTACTCTACCTGTTTGACAATCGGTTTAGAATTTTCAACCAGTAATGGATGATTTTTTGTGGTACTGTTACGTTTACTCCTACTGCGTTGGAAACCTCGGATAAGAACATGAACCAATCAGAAGAAATGCTCATTGATTACCGAAAATGATCTTTTGTTTTTGCCTTAAAGGGTTGGTTGTACCATTCCTTCTCAGTTGTTCTCCTATCAATTCTGGAAAGAAAGAGTTATATCAAGTAGTAAGGATTTAGTAACATTCTGGATGGGTGATCATCTGAAAAATGGATCACTAGCTAAACTCTGTTATATTGATGGATACTGCAGTTTTAGTTACCTATTTGGTGATTAAAAAGTTCAATAGGAGCAAGTAAACTAAAGGGATTCATTTCATCCACATGGTCAGGGGTCTTCCGTAGATTTGTTGGAGTTTTTTTGTCCTCTATTTGGTATGGCATTTAATTATGTTCATGTCCTTGCTTTTGAATCAGCTTATTTGACAATCCAAGCAATTCTGTCTCGCAGTTACTTAGAACAAACTTTCTTGGTATTTTTCTCTGGATAGTGAACAAGACTCCACGAACTTTGATATAGATTAGGTGCTTCTTTGGATTTTAGTATTCTAGCTAACTTTGCACTTATATGAATTCAATTAGCATAGCAGAGTTTGGTTGTTAGGATGGAGACCATTGGAAAAAGCTTTACACAAACCTCCACTGCTGTGTTGATAACCAGTTCATAAATGGTCTGGGTCGAATTTGTAGAATAATGTTCATCATTTGATCTCTCCTTGCGTTTTGGTGAATAGCTTTGGACTCGATATTTGTAGATTTCAAATGCTCTTGCTGGAATCGTGCACCTCATACGATATGTGGCTGGTGCTTTGTGCTTGGCGTATGATGCTTCACTAATTGTCATGTTTGAGATGGGTTCTACCTTAGTTTTGTATTCATGAGTAGCTTTGTTTAAAACCATATTCACATTGCTGATAGACAAAACAAGTGCAAGCAATCAAGTACGGTCACAAGTACCATCTAGCATTTAATTATTGAGAAAGAGTTCGTATGGAAATTTGCTTATGAATTGAGTTCCTTTCTCTTTTTTCCTTTTGTTTTTGTCATGTCGTTCTGAATTAATTGTGAGCATGCTTGGGCCCCATTTATTACTTGAGGTTCCCCTTTCCTTTTATTCCGTTTTAAATGTTTATTGAACAAACAAACAGAAAAGAATGTTGAGAAAAATCTAATATCCCCATGTCCCTTGCAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACGTGAGTCGAAAGCTAACACTCCTTCTTTTTAGCACCAAATAGATATTCAGATCTTCTCATCAATTTTTCACTTTTACTGATTTGCAACTCTGCAGTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

mRNA sequence

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

Coding sequence (CDS)

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGGTTCCACCCGACCCGACTTACCTTCTCCCCACCACTTCCCTCCCGACCCTCTCCTCTCCTCTGGCTCCTTCATCGACTCCTCCACCGCTCGATGCGGAACCCTACCTTCTTCTCCCGACTACGCCCGAGATCTTGACGGGAATCATCGCAACAAGCCTGACACCTCCGCCACTCTCCGATCTCCATTGCCTCCTGACCCTCTCAACCCTAAGAAGCTTCCTCCCGATTCTCCTACTCCAGGAAATGGAGATTCTTCGGCACCCAAGAAGGTGTCCGCCTCCAGAGGAACCGACGCCTCCCCCAAATCCGCCTTATCGGAAAGGCCTAATTGGCTCCCACCTGGCTGGGTGGTGGAAGATAGAGTTCGCGCTTCCGGTGCTACAGCTGGAACGGTTGATAAGTACTACTTTGACCCAAACTCAGGTCGTCGCTTCCGGTCTAAGATTGAAGTTCTTTACTTTCTCGAAACAGGAACGTTAAGGAAACGGAAGAAATCTTTAGACGGCAACTCTGCTGATGGCTCCGAAGAACCAAAGAGCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTGCCTGAAAAGGTCGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCCTGGACGCCGTTTATTAACAACGAGAAAGTACCTGAATCGACTAAACGCGAATGGGTAGCAGCCTTTCAACTCCTCGGGCGATCGAAAGTCTGA

Protein sequence

MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLLGRSKV

Homology

[Close]

BLAST of Carg12373-RA vs. NCBI nr
Match: XP_022948611.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 461.8 bits (1187), Expect = 1.5e-126
Identity = 230/260 (88.46%), Postives = 231/260 (88.85%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDGNHRNKPDTSATLRSPLP DPLNPKKLPPD                           A
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSK+
Sbjct: 241 PESTKREWVAAFQLLGRSKI 260

[Close]

BLAST of Carg12373-RA vs. NCBI nr
Match: XP_023523162.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458.4 bits (1178), Expect = 1.7e-125
Identity = 229/260 (88.08%), Postives = 229/260 (88.08%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDG HR KPDTSATLRSPLP DPLNPKKLPPD                           A
Sbjct: 61  LDGTHRKKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQE WTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEVWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Carg12373-RA vs. NCBI nr
Match: XP_022948610.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 456.8 bits (1174), Expect = 4.8e-125
Identity = 230/262 (87.79%), Postives = 231/262 (88.17%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDGNHRNKPDTSATLRSPLP DPLNPKKLPPD                           A
Sbjct: 61  LDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPKSA 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
           LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 261
           KVPESTKREWVAAFQLLGRSK+
Sbjct: 241 KVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of Carg12373-RA vs. NCBI nr
Match: XP_022998336.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 443.0 bits (1138), Expect = 7.2e-121
Identity = 247/260 (95.00%), Postives = 247/260 (95.00%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDGNHR KPDTSATLRSPLP DPLNPKKL PD   XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
                 WLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 XXXXXXWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240
           KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV
Sbjct: 181 KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKV 240

Query: 241 PESTKREWVAAFQLLGRSKV 261
           PESTKREWVAAFQLLGRSKV
Sbjct: 241 PESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Carg12373-RA vs. NCBI nr
Match: XP_022998335.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 438.0 bits (1125), Expect = 2.3e-119
Identity = 247/262 (94.27%), Postives = 247/262 (94.27%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60
           MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARD 60

Query: 61  LDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           LDGNHR KPDTSATLRSPLP DPLNPKKL PD   XXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 61  LDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 LSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180
                 WLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK
Sbjct: 121 XXXXXXWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK 180

Query: 181 KSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240
           KSLDGN  SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE
Sbjct: 181 KSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 240

Query: 241 KVPESTKREWVAAFQLLGRSKV 261
           KVPESTKREWVAAFQLLGRSKV
Sbjct: 241 KVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of Carg12373-RA vs. TAIR10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-30
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 0


Query: 126 NWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDG 185
           NWLPP W  E RVR SG  AGTVDK+Y++P +GR+FRSK EVLY+LE GT +K+      
Sbjct: 33  NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAE 92

Query: 186 NSADGSE----------EPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 245
           N    SE          + KS K  +     PLNFDF NVPEKV W   + S+EAW PFI
Sbjct: 93  NGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFI 152

Query: 246 NNEKVPESTKREWVAAFQLL 256
            + K+ ES  ++W   F L+
Sbjct: 153 GDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Carg12373-RA vs. TAIR10
Match: AT5G59380.1 (methyl-CPG-binding domain 6)

HSP 1 Score: 117.9 bits (294), Expect = 9.6e-27
Identity = 78/234 (33.33%), Postives = 107/234 (45.73%), Query Frame = 0


Query: 29  FPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKK 88
           FPPDPLL+SG+FI  S+A  GTL SS        G   +    S  +      D +N + 
Sbjct: 9   FPPDPLLASGAFI--SSAGDGTLDSSAKRRPIQGGIGISGSGESVRIGMANGTDQVNHQ- 68

Query: 89  LPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXALSERPNWLPPGWVVEDRVRASGATAGTV 148
                                            +   NWLPPGW VED++R SGATAG+V
Sbjct: 69  ------------------------TESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSV 128

Query: 149 DKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN-------SADGSEEPKSKKSSS 208
           DKYY++PN+GR+FRS+ EVLY+LE GT ++  K  +            GS          
Sbjct: 129 DKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTXXXXXX 188

Query: 209 NAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLL 256
                       N P+KV W + +  +E W P I + KV +S +R+W  AF  +
Sbjct: 189 XXXXXXXXXXXKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

[Close]

BLAST of Carg12373-RA vs. Swiss-Prot
Match: sp|Q9SNC0|MBD5_ARATH (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-29
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 0


Query: 126 NWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDG 185
           NWLPP W  E RVR SG  AGTVDK+Y++P +GR+FRSK EVLY+LE GT +K+      
Sbjct: 33  NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAE 92

Query: 186 NSADGSE----------EPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 245
           N    SE          + KS K  +     PLNFDF NVPEKV W   + S+EAW PFI
Sbjct: 93  NGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFI 152

Query: 246 NNEKVPESTKREWVAAFQLL 256
            + K+ ES  ++W   F L+
Sbjct: 153 GDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Carg12373-RA vs. Swiss-Prot
Match: sp|Q9LTJ1|MBD6_ARATH (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25
Identity = 78/234 (33.33%), Postives = 107/234 (45.73%), Query Frame = 0


Query: 29  FPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKK 88
           FPPDPLL+SG+FI  S+A  GTL SS        G   +    S  +      D +N + 
Sbjct: 9   FPPDPLLASGAFI--SSAGDGTLDSSAKRRPIQGGIGISGSGESVRIGMANGTDQVNHQ- 68

Query: 89  LPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXALSERPNWLPPGWVVEDRVRASGATAGTV 148
                                            +   NWLPPGW VED++R SGATAG+V
Sbjct: 69  ------------------------TESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSV 128

Query: 149 DKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN-------SADGSEEPKSKKSSS 208
           DKYY++PN+GR+FRS+ EVLY+LE GT ++  K  +            GS          
Sbjct: 129 DKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTXXXXXX 188

Query: 209 NAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPESTKREWVAAFQLL 256
                       N P+KV W + +  +E W P I + KV +S +R+W  AF  +
Sbjct: 189 XXXXXXXXXXXKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

[Close]

BLAST of Carg12373-RA vs. Swiss-Prot
Match: sp|Q9UBB5|MBD2_HUMAN (Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.4e-04
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 128 LPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGNS 187
           LPPGW  E+ +R SG +AG  D YYF P SG++FRSK ++  +L          ++D +S
Sbjct: 155 LPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL--------GNTVDLSS 214

Query: 188 AD---GSEEP-KSKKSSSNAKSAPLN 210
            D   G   P K +K+    ++ PLN
Sbjct: 215 FDFRTGKMMPSKLQKNKQRLRNDPLN 231

[Close]

BLAST of Carg12373-RA vs. Swiss-Prot
Match: sp|Q9Z2E1|MBD2_MOUSE (Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 6.4e-04
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 128 LPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGNS 187
           LPPGW  E+ +R SG +AG  D YYF P SG++FRSK ++  +L          ++D +S
Sbjct: 158 LPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL--------GNAVDLSS 217

Query: 188 AD---GSEEP-KSKKSSSNAKSAPLN 210
            D   G   P K +K+    ++ PLN
Sbjct: 218 FDFRTGKMMPSKLQKNKQRLRNDPLN 234

[Close]

BLAST of Carg12373-RA vs. TrEMBL
Match: tr|A0A0A0LXE4|A0A0A0LXE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.9e-90
Identity = 188/267 (70.41%), Postives = 197/267 (73.78%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTA----RCGTLPSSP 60
           MSASGTSFPD DWPR    TRPDLP  HH PPDPLLS+GSFIDSST+       T+PS  
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  DYARDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXX 120
             +RDLD   R  P TS+T RSPL PDPLN                              
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLN------------SFNGDSSPSKKVSASNSA 143

Query: 121 XXXXALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGT 180
               ALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGT
Sbjct: 144 SSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGT 203

Query: 181 LRKRKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTP 240
           LRKRKKSLDGN  S D SEEPK KKSSSNAK+APLNFDFFNVPEKVEWVLTDPSQ+AWTP
Sbjct: 204 LRKRKKSLDGNPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTP 263

Query: 241 FINNEKVPESTKREWVAAFQLLGRSKV 261
           FI+NEKVPESTK EWV AFQLLGRSKV
Sbjct: 264 FIDNEKVPESTKCEWVGAFQLLGRSKV 278

[Close]

BLAST of Carg12373-RA vs. TrEMBL
Match: tr|A0A1S3C6A2|A0A1S3C6A2_CUCME (methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103497158 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 5.7e-90
Identity = 186/268 (69.40%), Postives = 194/268 (72.39%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS----- 60
           MSASGTS PD DWPR    TRPDLP  HH PPDPLLS+GSFIDSS++     P S     
Sbjct: 24  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVXXX 83

Query: 61  PDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXX 120
               RDLD   R  P TS+T RSPL PDPLN                             
Sbjct: 84  XXXXRDLDRTPRKTPQTSSTRRSPLRPDPLN------------SFNGDSSPSKKVSASNS 143

Query: 121 XXXXXALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETG 180
                ALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETG
Sbjct: 144 ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETG 203

Query: 181 TLRKRKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWT 240
           TLRKRKKSLDGN  S DGS+EPK KKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQ+AWT
Sbjct: 204 TLRKRKKSLDGNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWT 263

Query: 241 PFINNEKVPESTKREWVAAFQLLGRSKV 261
           PFI+NEKVPESTK EWV AFQLLGRSKV
Sbjct: 264 PFIDNEKVPESTKCEWVGAFQLLGRSKV 279

[Close]

BLAST of Carg12373-RA vs. TrEMBL
Match: tr|A0A2I4E7N3|A0A2I4E7N3_9ROSI (methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN=LOC108987020 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.1e-44
Identity = 114/257 (44.36%), Postives = 149/257 (57.98%), Query Frame = 0


Query: 1   MSASGTSFPDPDWP--RQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60
           MS+ G   P+P W   ++   RP+       P DPLL SGSFI+++ +       +P   
Sbjct: 1   MSSLGQD-PNPHWNSLKRYPNRPEEVLTAGLPSDPLLKSGSFIEATASGRQGTAETPRMR 60

Query: 61  RDLDG-NHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXX 120
           R  DG +     + S    +PLP +  +P                               
Sbjct: 61  RSSDGASPSMASEKSNGAETPLPENTASP-------------------------AGAQQR 120

Query: 121 XXALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLR 180
             A +  P+WLPPGW+VEDRVR+SGA+AG +D+Y+F+P SGRRFRSK EVLYFLETGT R
Sbjct: 121 RVAAAPLPDWLPPGWLVEDRVRSSGASAGVIDRYFFEPVSGRRFRSKNEVLYFLETGTKR 180

Query: 181 KRKKSLDGNSAD--GSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240
           K+ K  + + AD  GSE  K KKS++ AKS+ L FD+ NVPEKV+WVLTD SQ +W P+I
Sbjct: 181 KKGKLGENSDADTMGSEGQKEKKSATKAKSSALKFDYLNVPEKVQWVLTDSSQGSWAPYI 231

Query: 241 NNEKVPESTKREWVAAF 253
             EKVPEST +EW AAF
Sbjct: 241 GEEKVPESTMQEWAAAF 231

[Close]

BLAST of Carg12373-RA vs. TrEMBL
Match: tr|A0A2I4EUW9|A0A2I4EUW9_9ROSI (methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN=LOC108992930 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 109/248 (43.95%), Postives = 138/248 (55.65%), Query Frame = 0


Query: 9   PDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFID-SSTARCGTLPSSPDYARDLDGNHRN 68
           P+P  P++  +RP        P DPLL  GS+ID ++T R GT  S     R  D +  +
Sbjct: 10  PNPKSPKRDPSRPGKSLSAELPSDPLLRPGSYIDATATGRDGT-ASMLGMRRSSDSSSPS 69

Query: 69  -KPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXALSERPN 128
               TS  + +P P    +P                                 A +  P+
Sbjct: 70  LASKTSNGVATPFPESTESP-------------------------AGAQQRRGAAAALPD 129

Query: 129 WLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRKKSLDGN 188
           WLPPGW +EDR R SGA+AG +D+Y+ DP SG RFRSK EV +FLETGT RKR K ++ +
Sbjct: 130 WLPPGWKIEDRARISGASAGMIDRYFLDPVSGHRFRSKKEVFFFLETGTKRKRGKVMENS 189

Query: 189 SAD--GSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPEST 248
            AD  GSE  K KKS   +KS+   FDFFNVPEKVEWVLTD +Q +W PFI +EKV EST
Sbjct: 190 DADALGSEGQKPKKSGMKSKSSASKFDFFNVPEKVEWVLTDTTQGSWAPFIGDEKVSEST 231

Query: 249 KREWVAAF 253
            +EW AAF
Sbjct: 250 MQEWSAAF 231

[Close]

BLAST of Carg12373-RA vs. TrEMBL
Match: tr|A0A251NLR4|A0A251NLR4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G076700 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.4e-40
Identity = 110/254 (43.31%), Postives = 136/254 (53.54%), Query Frame = 0


Query: 7   SFPD--PDWP--RQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYARDLD 66
           S PD  P++P  R G+   D+      PPDPLL  GSFID++T                 
Sbjct: 16  STPDRRPNYPDYRAGTLNSDI------PPDPLLRPGSFIDATTR---------------T 75

Query: 67  GNHRNKPDTSATLRSPLPPDPLNPKKLPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXALS 126
            N +N  +               P++ P                              + 
Sbjct: 76  SNGQNVKEAQ------------KPRRAPEQSKCAEPATSGSGMENPDGGAGRVKRKGFVE 135

Query: 127 ERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRKRK-- 186
              NWLP GW VE+RVRASGATAG+ D+YY DP SGRRFRSK+EVLYFLETGT++++K  
Sbjct: 136 PLENWLPQGWSVEERVRASGATAGSTDRYYVDPVSGRRFRSKVEVLYFLETGTIKRKKTT 195

Query: 187 --KSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNE 246
              S D  S +GS   K KKSS+  KS+ LNFDF NVPE V WVLTD S  +WTPFI N+
Sbjct: 196 ENASGDKTSVEGSGSHKQKKSSTKPKSSALNFDFVNVPENVVWVLTDSSAGSWTPFIGNK 236

Query: 247 KVPESTKREWVAAF 253
           +VPEST +EW AAF
Sbjct: 256 EVPESTTQEWAAAF 236

The following BLAST results are available for this feature:

BLAST of Carg12373-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948611.1	1.5e-126	88.46	methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moscha...	[more]
XP_023523162.1	1.7e-125	88.08	methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022948610.1	4.8e-125	87.79	methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moscha...	[more]
XP_022998336.1	7.2e-121	95.00	methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita maxima...	[more]
XP_022998335.1	2.3e-119	94.27	methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima...	[more]

BLAST of Carg12373-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46580.1	1.9e-30	47.86	methyl-CPG-binding domain protein 5	[more]
AT5G59380.1	9.6e-27	33.33	methyl-CPG-binding domain 6	[more]

BLAST of Carg12373-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SNC0\|MBD5_ARATH	3.4e-29	47.86	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q9LTJ1\|MBD6_ARATH	1.7e-25	33.33	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q9UBB5\|MBD2_HUMAN	6.4e-04	38.37	Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1	[more]
sp\|Q9Z2E1\|MBD2_MOUSE	6.4e-04	38.37	Methyl-CpG-binding domain protein 2 OS=Mus musculus OX=10090 GN=Mbd2 PE=2 SV=2	[more]

BLAST of Carg12373-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXE4\|A0A0A0LXE4_CUCSA	1.9e-90	70.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV=1	[more]
tr\|A0A1S3C6A2\|A0A1S3C6A2_CUCME	5.7e-90	69.40	methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2I4E7N3\|A0A2I4E7N3_9ROSI	2.1e-44	44.36	methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN...	[more]
tr\|A0A2I4EUW9\|A0A2I4EUW9_9ROSI	1.1e-40	43.95	methyl-CpG-binding domain-containing protein 5-like OS=Juglans regia OX=51240 GN...	[more]
tr\|A0A251NLR4\|A0A251NLR4_PRUPE	2.4e-40	43.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G076700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR001739	Methyl_CpG_DNA-bd

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12373	Carg12373	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12373-RA	Carg12373-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12373-RA.exon.1	Carg12373-RA.exon.1	exon
Carg12373-RA.exon.2	Carg12373-RA.exon.2	exon
Carg12373-RA.exon.3	Carg12373-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12373-RA.CDS.1	Carg12373-RA.CDS.1	CDS
Carg12373-RA.CDS.2	Carg12373-RA.CDS.2	CDS
Carg12373-RA.CDS.3	Carg12373-RA.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.890.10		coord: 96..209 e-value: 2.8E-20 score: 74.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..207
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 124..234
None	No IPR available	PANTHER	PTHR12396:SF11	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 5-RELATED	coord: 124..234
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 121..218 e-value: 1.6E-14 score: 53.2
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 118..190 score: 15.109
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 112..175