CmaCh13G001260 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCCCTGTTTGCTTCTTCCTCTTCGTCTTGCAAAGCCCCGCCCCACATGTCTGCTTTCGGAACTTCGTTATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGCCGACCCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCTAGAGGGACCGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGGTGAATTGATTCCTTCTCTTTTGACTAGTATCATTTCGATTTTGAATTTTGAGTTCCTTTTCTTGACTGGCGTTCTTGAGTTTTGGAAGATCGTGTTCAAAGTGGAGATGAGTCAGTTTTGGTAATTGTTCGACCATGCAAGTAATATTCTGTTCCATGGCTCTGGTTACTGAACTTCTCTATGCAATTTAATGTCCGATGATAGAACAGGGCTTTACCGTCGCTGGAATTTTTGTTCTTCTACTCTAGCCGTGGACTCTTGGTTTAGAATTTTCTACCAGTCAGGAATGATTTTTCGGATGAAAACATGGACCAATTAGAAGAAATTATCATTGTTTACTGCAAATGATCTTTTGTTTGTGCTTCAAGGGGTTGGTTGTAGTAGCATTCCCTTGTCGATTGTTCTCTCATCAATTATGGGAAAAAACAACTGTATCAAGTAGCAAAGGGTTTAGTAATTACTTCTGAAAAATGGATCACGACCTAAATTCTCTGTCGTTTTGATGGGGATTGCAGTTTTAGTTACCTGATTGGGAATTTTGAAGTTCCCTAGGAACAAGTAAACTACAGGAATTCATTTCCTTCCTCTCTAAATTTGTTTAGGGAATTCATTTCTCATTTACTTGGTATAGTATTTAAGTATGTCCATGCTTTCGAGTGAGTTCATCTGACAATCCGAGCGATTCTGTCGTGCAGTTACGATATCGAACTTTCTTAGTCCTTTTCTCTGGATGGTGAACAAGCCTCGACGAACTTTGATATAGACTTAGGTGCTTCTTTGGATTTTGGTACTCTAGCTACTTACCATTTATATGAAATCAATTAGCATGACAGAGCTTGGTTGATTAGGATGGAGACTATCATTGGAAAAGAATAACAAAAACCTCCACTGTTATGTTTATAGCCTGTTCATAAATGATGAGGATCAAATTGTAGGATAGTATTTGGAACTGCCCAAAGCCCACCGCTAGCAAATATTGTCTCTTTGGCCCGTTACGTATCATCGTCAGCCTTACGATTTTAAAACGTGTCTCGCTTGGGGCCCAACGTCTCGCTGGAACACCACCCAGTGTTTGCCTTTGATATCATTTGTAACAGCTCAAGCTCCCGCTAGTAGATACTGTCCGCTTTGGCCCGTTACTTATTGCCATACCTCACGGTTTTAAAATGCTTCTGCTAGGGAGAGGTTTCTACACTTTTATAAGGAAGGAATGTTTCGTTTCCTTCTCCAACCAATATGAGATCTCACTTCTATATGCATGTATGCATGAGGGTGAATAGCTCTTGACTCATACTTGGACTGTTGCTTGGTGCTTGATATATGATGCTTCACTCAGAGTCATTTTTGAGATGGATTATACCTTAACTTTGTATTCATAAATAGCTCTGTTTAAAAGCACATTGACATTGTTGATAGACAAAACAAATGCAAGCAATTAAGTACGGTCACAAGTACCGTTTAGCATTTAATGATTGACTACGAGTTTAAGTGTCGTTTGAATTTGAGTGTTTTTTTTTTCCCTTTTGTTTTTTTTTTTTTTCCTTTTTTCATGTCATGTTGAATTAGTTGGGAGCATGCTTGGGCCCATTTATTTCTTGAGATTCCCCTGTCTTATTATCCTGCTTTACATATTTATTAAACAAACAAACGGTAGAGAACGTCAAAGGAATCTAATCCATCCTCATGTTTCTTGCAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGGTGAGTCGAAAGCTAACACTCCTTCTTTTGCACCCAATGGGATATTCAGACCTTCTCATACGTTTTATCGCTTCGATTTACAACTGCAGTCTGCTGACGGCCCTGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTGAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTATACTCCTCAGCCGATCAAAAGTTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAGTGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGGGTTGTGAAAACCAGATTTGGTTAGAAAAAAACATGAATCTATCAAACTATGTCTTGGACTGTGAAGAAGTGATCAATTTGTGTAGACGAGGGGCGGCTGAGTTCATTCTGGATCAAATGTATTTGAACGAGGGGCTATTTCATTTTGGACTGTGAAGAAGTGATCAATTTGTGTAGACGAGGGGCGGCTGAGTTCATTCTGAATCAAATGTATTTGAACGAGGGGCTATTTCATTTTGGTTCTTATGGTATTGCTCTTCATTTTGATATATAGATCTGGATTTGTTTTATGATTCAAAGTTCATAATTTTGTGGTGATAATATTGATGTTGGTTTTAATGGTAATGTTTAGTCAAACGAACAAAAACGAAGTGAATTTGTAAGTTAATTCCCTTTTTTTTTTAAATAAAATTTGAGGAAAGATTCATTTTGCT TTTCCCTGTTTGCTTCTTCCTCTTCGTCTTGCAAAGCCCCGCCCCACATGTCTGCTTTCGGAACTTCGTTATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGCCGACCCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCTAGAGGGACCGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCTGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTGAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTATACTCCTCAGCCGATCAAAAGTTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAGTGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGGGTTGTGAAAACCAGATTTGGTTAGAAAAAAACATGAATCTATCAAACTATGTCTTGGACTGTGAAGAAGTGATCAATTTGTGTAGACGAGGGGCGGCTGAGTTCATTCTGGATCAAATGTATTTGAACGAGGGGCTATTTCATTTTGGACTGTGAAGAAGTGATCAATTTGTGTAGACGAGGGGCGGCTGAGTTCATTCTGAATCAAATGTATTTGAACGAGGGGCTATTTCATTTTGGTTCTTATGGTATTGCTCTTCATTTTGATATATAGATCTGGATTTGTTTTATGATTCAAAGTTCATAATTTTGTGGTGATAATATTGATGTTGGTTTTAATGGTAATGTTTAGTCAAACGAACAAAAACGAAGTGAATTTGTAAGTTAATTCCCTTTTTTTTTTAAATAAAATTTGAGGAAAGATTCATTTTGCT ATGTCTGCTTTCGGAACTTCGTTATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGCCGACCCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCTAGAGGGACCGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCTGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTGAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTATACTCCTCAGCCGATCAAAAGTTTGA MSAFGTSLSDPDWPRRDPTRFNLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRADPLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLSRSKV
BLAST of CmaCh13G001260 vs. Swiss-Prot
Match: MBD6_ARATH (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 PE=1 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 4.1e-32 Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 1
BLAST of CmaCh13G001260 vs. Swiss-Prot
Match: MBD5_ARATH (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 PE=1 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 3.4e-31 Identity = 75/167 (44.91%), Postives = 98/167 (58.68%), Query Frame = 1
BLAST of CmaCh13G001260 vs. TrEMBL
Match: A0A0A0LXE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G522010 PE=4 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 4.7e-96 Identity = 190/257 (73.93%), Postives = 207/257 (80.54%), Query Frame = 1
BLAST of CmaCh13G001260 vs. TrEMBL
Match: V4UFH3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029152mg PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 7.9e-43 Identity = 111/235 (47.23%), Postives = 147/235 (62.55%), Query Frame = 1
BLAST of CmaCh13G001260 vs. TrEMBL
Match: A0A067G387_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045019mg PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 7.9e-43 Identity = 111/235 (47.23%), Postives = 147/235 (62.55%), Query Frame = 1
BLAST of CmaCh13G001260 vs. TrEMBL
Match: A0A061H022_THECC (Methyl-CPG-binding domain protein 5, putative isoform 2 OS=Theobroma cacao GN=TCM_041832 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 5.7e-41 Identity = 99/223 (44.39%), Postives = 134/223 (60.09%), Query Frame = 1
BLAST of CmaCh13G001260 vs. TrEMBL
Match: A0A0D2SKJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G263700 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.3e-40 Identity = 100/226 (44.25%), Postives = 130/226 (57.52%), Query Frame = 1
BLAST of CmaCh13G001260 vs. TAIR10
Match: AT5G59380.1 (AT5G59380.1 methyl-CPG-binding domain 6) HSP 1 Score: 139.8 bits (351), Expect = 2.3e-33 Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 1
BLAST of CmaCh13G001260 vs. TAIR10
Match: AT3G46580.1 (AT3G46580.1 methyl-CPG-binding domain protein 5) HSP 1 Score: 136.7 bits (343), Expect = 1.9e-32 Identity = 75/167 (44.91%), Postives = 98/167 (58.68%), Query Frame = 1
BLAST of CmaCh13G001260 vs. TAIR10
Match: AT5G59800.1 (AT5G59800.1 methyl-CPG-binding domain 7) HSP 1 Score: 48.9 bits (115), Expect = 5.3e-06 Identity = 39/131 (29.77%), Postives = 58/131 (44.27%), Query Frame = 1
BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|659115288|ref|XP_008457481.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo]) HSP 1 Score: 366.3 bits (939), Expect = 4.3e-98 Identity = 192/258 (74.42%), Postives = 211/258 (81.78%), Query Frame = 1
BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|778661468|ref|XP_011658162.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Cucumis sativus]) HSP 1 Score: 359.0 bits (920), Expect = 6.8e-96 Identity = 190/257 (73.93%), Postives = 207/257 (80.54%), Query Frame = 1
BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|694375413|ref|XP_009364396.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Pyrus x bretschneideri]) HSP 1 Score: 187.6 bits (475), Expect = 2.7e-44 Identity = 104/223 (46.64%), Postives = 139/223 (62.33%), Query Frame = 1
BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|657952374|ref|XP_008357235.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Malus domestica]) HSP 1 Score: 186.8 bits (473), Expect = 4.6e-44 Identity = 104/223 (46.64%), Postives = 138/223 (61.88%), Query Frame = 1
BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|645216995|ref|XP_008223622.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Prunus mume]) HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43 Identity = 106/222 (47.75%), Postives = 141/222 (63.51%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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