CmaCh13G001260 (gene) Cucurbita maxima (Rimu)

NameCmaCh13G001260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMethyl-CpG-binding domain-containing protein 6
LocationCma_Chr13 : 866942 .. 870111 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCCTGTTTGCTTCTTCCTCTTCGTCTTGCAAAGCCCCGCCCCACATGTCTGCTTTCGGAACTTCGTTATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGCCGACCCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCTAGAGGGACCGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGGTGAATTGATTCCTTCTCTTTTGACTAGTATCATTTCGATTTTGAATTTTGAGTTCCTTTTCTTGACTGGCGTTCTTGAGTTTTGGAAGATCGTGTTCAAAGTGGAGATGAGTCAGTTTTGGTAATTGTTCGACCATGCAAGTAATATTCTGTTCCATGGCTCTGGTTACTGAACTTCTCTATGCAATTTAATGTCCGATGATAGAACAGGGCTTTACCGTCGCTGGAATTTTTGTTCTTCTACTCTAGCCGTGGACTCTTGGTTTAGAATTTTCTACCAGTCAGGAATGATTTTTCGGATGAAAACATGGACCAATTAGAAGAAATTATCATTGTTTACTGCAAATGATCTTTTGTTTGTGCTTCAAGGGGTTGGTTGTAGTAGCATTCCCTTGTCGATTGTTCTCTCATCAATTATGGGAAAAAACAACTGTATCAAGTAGCAAAGGGTTTAGTAATTACTTCTGAAAAATGGATCACGACCTAAATTCTCTGTCGTTTTGATGGGGATTGCAGTTTTAGTTACCTGATTGGGAATTTTGAAGTTCCCTAGGAACAAGTAAACTACAGGAATTCATTTCCTTCCTCTCTAAATTTGTTTAGGGAATTCATTTCTCATTTACTTGGTATAGTATTTAAGTATGTCCATGCTTTCGAGTGAGTTCATCTGACAATCCGAGCGATTCTGTCGTGCAGTTACGATATCGAACTTTCTTAGTCCTTTTCTCTGGATGGTGAACAAGCCTCGACGAACTTTGATATAGACTTAGGTGCTTCTTTGGATTTTGGTACTCTAGCTACTTACCATTTATATGAAATCAATTAGCATGACAGAGCTTGGTTGATTAGGATGGAGACTATCATTGGAAAAGAATAACAAAAACCTCCACTGTTATGTTTATAGCCTGTTCATAAATGATGAGGATCAAATTGTAGGATAGTATTTGGAACTGCCCAAAGCCCACCGCTAGCAAATATTGTCTCTTTGGCCCGTTACGTATCATCGTCAGCCTTACGATTTTAAAACGTGTCTCGCTTGGGGCCCAACGTCTCGCTGGAACACCACCCAGTGTTTGCCTTTGATATCATTTGTAACAGCTCAAGCTCCCGCTAGTAGATACTGTCCGCTTTGGCCCGTTACTTATTGCCATACCTCACGGTTTTAAAATGCTTCTGCTAGGGAGAGGTTTCTACACTTTTATAAGGAAGGAATGTTTCGTTTCCTTCTCCAACCAATATGAGATCTCACTTCTATATGCATGTATGCATGAGGGTGAATAGCTCTTGACTCATACTTGGACTGTTGCTTGGTGCTTGATATATGATGCTTCACTCAGAGTCATTTTTGAGATGGATTATACCTTAACTTTGTATTCATAAATAGCTCTGTTTAAAAGCACATTGACATTGTTGATAGACAAAACAAATGCAAGCAATTAAGTACGGTCACAAGTACCGTTTAGCATTTAATGATTGACTACGAGTTTAAGTGTCGTTTGAATTTGAGTGTTTTTTTTTTCCCTTTTGTTTTTTTTTTTTTTCCTTTTTTCATGTCATGTTGAATTAGTTGGGAGCATGCTTGGGCCCATTTATTTCTTGAGATTCCCCTGTCTTATTATCCTGCTTTACATATTTATTAAACAAACAAACGGTAGAGAACGTCAAAGGAATCTAATCCATCCTCATGTTTCTTGCAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGGTGAGTCGAAAGCTAACACTCCTTCTTTTGCACCCAATGGGATATTCAGACCTTCTCATACGTTTTATCGCTTCGATTTACAACTGCAGTCTGCTGACGGCCCTGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTGAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTATACTCCTCAGCCGATCAAAAGTTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAGTGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGGGTTGTGAAAACCAGATTTGGTTAGAAAAAAACATGAATCTATCAAACTATGTCTTGGACTGTGAAGAAGTGATCAATTTGTGTAGACGAGGGGCGGCTGAGTTCATTCTGGATCAAATGTATTTGAACGAGGGGCTATTTCATTTTGGACTGTGAAGAAGTGATCAATTTGTGTAGACGAGGGGCGGCTGAGTTCATTCTGAATCAAATGTATTTGAACGAGGGGCTATTTCATTTTGGTTCTTATGGTATTGCTCTTCATTTTGATATATAGATCTGGATTTGTTTTATGATTCAAAGTTCATAATTTTGTGGTGATAATATTGATGTTGGTTTTAATGGTAATGTTTAGTCAAACGAACAAAAACGAAGTGAATTTGTAAGTTAATTCCCTTTTTTTTTTAAATAAAATTTGAGGAAAGATTCATTTTGCT

mRNA sequence

TTTCCCTGTTTGCTTCTTCCTCTTCGTCTTGCAAAGCCCCGCCCCACATGTCTGCTTTCGGAACTTCGTTATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGCCGACCCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCTAGAGGGACCGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCTGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTGAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTATACTCCTCAGCCGATCAAAAGTTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAGTGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGGGTTGTGAAAACCAGATTTGGTTAGAAAAAAACATGAATCTATCAAACTATGTCTTGGACTGTGAAGAAGTGATCAATTTGTGTAGACGAGGGGCGGCTGAGTTCATTCTGGATCAAATGTATTTGAACGAGGGGCTATTTCATTTTGGACTGTGAAGAAGTGATCAATTTGTGTAGACGAGGGGCGGCTGAGTTCATTCTGAATCAAATGTATTTGAACGAGGGGCTATTTCATTTTGGTTCTTATGGTATTGCTCTTCATTTTGATATATAGATCTGGATTTGTTTTATGATTCAAAGTTCATAATTTTGTGGTGATAATATTGATGTTGGTTTTAATGGTAATGTTTAGTCAAACGAACAAAAACGAAGTGAATTTGTAAGTTAATTCCCTTTTTTTTTTAAATAAAATTTGAGGAAAGATTCATTTTGCT

Coding sequence (CDS)

ATGTCTGCTTTCGGAACTTCGTTATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGCCGACCCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCTAGAGGGACCGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCTGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTGAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTATACTCCTCAGCCGATCAAAAGTTTGA

Protein sequence

MSAFGTSLSDPDWPRRDPTRFNLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRADPLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLSRSKV
BLAST of CmaCh13G001260 vs. Swiss-Prot
Match: MBD6_ARATH (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-32
Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 1

Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRADPLNAGNG 89
           PPDPLL +G+FI  S+A  GTL SS                     R P +     +G+G
Sbjct: 10  PPDPLLASGAFI--SSAGDGTLDSSAK-------------------RRPIQGGIGISGSG 69

Query: 90  DSPATKKLSGS----RGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDP 149
           +S      +G+      T++  +  ++   NWLPPGW +ED++RTSGATAG+VDKYY++P
Sbjct: 70  ESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEP 129

Query: 150 VSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNA-----KSAPL 209
            +GR+FRS+ EVLY+LE GT ++  K  +    + D  E   + + +  A        PL
Sbjct: 130 NTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPPPPL 189

Query: 210 NFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLS 249
           +FDF N P+KV W + +  +E W P I + KV  S +R+W  AF  ++
Sbjct: 190 DFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFIT 216

BLAST of CmaCh13G001260 vs. Swiss-Prot
Match: MBD5_ARATH (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-31
Identity = 75/167 (44.91%), Postives = 98/167 (58.68%), Query Frame = 1

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
           ++PAT   S SR      K A+    NWLPP W  E RVRTSG  AGTVDK+Y++P++GR
Sbjct: 13  ENPATPVDSKSR------KRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGR 72

Query: 150 RFRSKIEVLYFLETGTLRKRKKSLDGNGTS--------ADGPEEPKNKKSSNNAKSAPLN 209
           +FRSK EVLY+LE GT +K+      NG S             + K+ K        PLN
Sbjct: 73  KFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLN 132

Query: 210 FDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLS 249
           FDFLNVPEKV W   + S+EAW PFI + K+ +S  ++W   F L++
Sbjct: 133 FDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVT 173

BLAST of CmaCh13G001260 vs. TrEMBL
Match: A0A0A0LXE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G522010 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.7e-96
Identity = 190/257 (73.93%), Postives = 207/257 (80.54%), Query Frame = 1

Query: 1   MSAFGTSLSDPDWPR-RDPTRFNLPFSNHLPPDPLLDAGSFIDSSAAR----CGTLPSSP 60
           MSA GTS  D DWPR  DPTR +LPFS+HLPPDPLL AGSFIDSS +       T+PS  
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  NHSRDLDLNHRKKAETSSTLRSPFRADPLNAGNGDSPATKKLSGSRGTDASPKSASSEKP 120
             SRDLD   RK   TSST RSP R DPLN+ NGDS  +KK+S S    AS KSA SE+P
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNS--ASSKSALSERP 143

Query: 121 NWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDG 180
           NWLPPGW++EDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVLYFLETGTLRKRKKSLDG
Sbjct: 144 NWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDG 203

Query: 181 NGTSADGPEEPKNKKSSNNAKSAPLNFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQS 240
           N +S D  EEPK KKSS+NAK+APLNFDF NVPEKVEWVLTDPSQ+AWTPFI+NEKVP+S
Sbjct: 204 NPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPES 263

Query: 241 TKREWVAAFILLSRSKV 253
           TK EWV AF LL RSKV
Sbjct: 264 TKCEWVGAFQLLGRSKV 278

BLAST of CmaCh13G001260 vs. TrEMBL
Match: V4UFH3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029152mg PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.9e-43
Identity = 111/235 (47.23%), Postives = 147/235 (62.55%), Query Frame = 1

Query: 22  NLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRA 81
           NL  + ++PPDPLLD+G FID++        S  N +   D   +K+     T+R   ++
Sbjct: 27  NLFSTVNVPPDPLLDSGFFIDAAPPAT----SGSNTTTTNDQTSKKRG----TIRE-HKS 86

Query: 82  DPLNAGNG-DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDK 141
           + L   NG +S  T + + +R   A+          WLPPGW +EDRVRTSGATAGTVDK
Sbjct: 87  ENLATTNGTESALTPETASTRRLTATEA--------WLPPGWEIEDRVRTSGATAGTVDK 146

Query: 142 YYFDPVSGRRFRSKIEVLYFLETGTLRKRKK-----SLDGNGTSADGPEEPKNKKSSNNA 201
           YYF   SGRRFRSK EVLYFLETGT RKR+K      +D +G++A      K KK +  A
Sbjct: 147 YYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAG---STKQKKPNIKA 206

Query: 202 KSAPLNFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLSRS 251
           K++ LNFD+ N PE VEWVLTDPS+ +WTPFI   +VP+S +++W AAF  L+ S
Sbjct: 207 KTSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTS 241

BLAST of CmaCh13G001260 vs. TrEMBL
Match: A0A067G387_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045019mg PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.9e-43
Identity = 111/235 (47.23%), Postives = 147/235 (62.55%), Query Frame = 1

Query: 22  NLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRA 81
           NL  + ++PPDPLLD+G FID++        S  N +   D   +K+     T+R   ++
Sbjct: 27  NLFSTVNVPPDPLLDSGFFIDAAPPAT----SGSNTTTTNDQTSKKRG----TIRE-HKS 86

Query: 82  DPLNAGNG-DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDK 141
           + L   NG +S  T + + +R   A+          WLPPGW +EDRVRTSGATAGTVDK
Sbjct: 87  ENLATTNGTESALTPETASTRRLTATEA--------WLPPGWEIEDRVRTSGATAGTVDK 146

Query: 142 YYFDPVSGRRFRSKIEVLYFLETGTLRKRKK-----SLDGNGTSADGPEEPKNKKSSNNA 201
           YYF   SGRRFRSK EVLYFLETGT RKR+K      +D +G++A      K KK +  A
Sbjct: 147 YYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAG---STKQKKPNIKA 206

Query: 202 KSAPLNFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLSRS 251
           K++ LNFD+ N PE VEWVLTDPS+ +WTPFI   +VP+S +++W AAF  L+ S
Sbjct: 207 KTSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTS 241

BLAST of CmaCh13G001260 vs. TrEMBL
Match: A0A061H022_THECC (Methyl-CPG-binding domain protein 5, putative isoform 2 OS=Theobroma cacao GN=TCM_041832 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.7e-41
Identity = 99/223 (44.39%), Postives = 134/223 (60.09%), Query Frame = 1

Query: 29  LPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRADPLNAGN 88
           L PDPLL +G FID++     + P++P +                   SP+ A P     
Sbjct: 12  LTPDPLLKSGLFIDANGQNRSSKPTNPPNG-----------------SSPYGAQP----- 71

Query: 89  GDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSG 148
                +  L+ ++G     K        WLP GW++EDRVRTSGATAGTVDKYY DP SG
Sbjct: 72  --EARSSPLAVAKG-----KRRVVPPETWLPAGWLVEDRVRTSGATAGTVDKYYVDPSSG 131

Query: 149 RRFRSKIEVLYFLETG-TLRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFLNV 208
           R+FRSK EVLYF+ETG T  KRKK ++ +GT          K+  +  K+ PLNFDF NV
Sbjct: 132 RKFRSKKEVLYFIETGITPTKRKKGMETSGTEESTGISADTKQRKSEKKTKPLNFDFTNV 191

Query: 209 PEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLSRS 251
           PEKV+W+LT+ S ++WTPF+ +E+VP+ST+++W AAF  L+ S
Sbjct: 192 PEKVDWLLTNASVDSWTPFLGDEQVPESTRQDWAAAFTFLTAS 205

BLAST of CmaCh13G001260 vs. TrEMBL
Match: A0A0D2SKJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G263700 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-40
Identity = 100/226 (44.25%), Postives = 130/226 (57.52%), Query Frame = 1

Query: 29  LPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRADPLNAGN 88
           LP DPLL  G+FID +       P+ P  SR+  + +  + ET                 
Sbjct: 12  LPSDPLLKPGAFIDVNGQG---KPAEPTKSRNGLIPNGSQPET----------------- 71

Query: 89  GDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSG 148
              P+   ++ S   D+  K        WLPPGW++EDRVRTSGATAG VDKYY DP SG
Sbjct: 72  ---PSRGSVNSSSSADSKVKRRVVAPETWLPPGWLIEDRVRTSGATAGLVDKYYVDPTSG 131

Query: 149 RRFRSKIEVLYFLETGT---LRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFL 208
           R+FRSK EVLYFLE G+    RK+   L G+   + G   P  K+  +  K  PLNFDF+
Sbjct: 132 RKFRSKKEVLYFLENGSPPPKRKKGTELPGSEVPSTG-NSPGQKQKKSAKKQKPLNFDFI 191

Query: 209 NVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLSRSK 252
           NVPEKV+W LTD   ++WTPF+ N+ VP+STK++W AAF  L+  K
Sbjct: 192 NVPEKVDWFLTDACSDSWTPFLGNDLVPESTKQDWAAAFTSLTVKK 213

BLAST of CmaCh13G001260 vs. TAIR10
Match: AT5G59380.1 (AT5G59380.1 methyl-CPG-binding domain 6)

HSP 1 Score: 139.8 bits (351), Expect = 2.3e-33
Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 1

Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRADPLNAGNG 89
           PPDPLL +G+FI  S+A  GTL SS                     R P +     +G+G
Sbjct: 10  PPDPLLASGAFI--SSAGDGTLDSSAK-------------------RRPIQGGIGISGSG 69

Query: 90  DSPATKKLSGS----RGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDP 149
           +S      +G+      T++  +  ++   NWLPPGW +ED++RTSGATAG+VDKYY++P
Sbjct: 70  ESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEP 129

Query: 150 VSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNA-----KSAPL 209
            +GR+FRS+ EVLY+LE GT ++  K  +    + D  E   + + +  A        PL
Sbjct: 130 NTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPPPPL 189

Query: 210 NFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLS 249
           +FDF N P+KV W + +  +E W P I + KV  S +R+W  AF  ++
Sbjct: 190 DFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFIT 216

BLAST of CmaCh13G001260 vs. TAIR10
Match: AT3G46580.1 (AT3G46580.1 methyl-CPG-binding domain protein 5)

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-32
Identity = 75/167 (44.91%), Postives = 98/167 (58.68%), Query Frame = 1

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
           ++PAT   S SR      K A+    NWLPP W  E RVRTSG  AGTVDK+Y++P++GR
Sbjct: 13  ENPATPVDSKSR------KRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGR 72

Query: 150 RFRSKIEVLYFLETGTLRKRKKSLDGNGTS--------ADGPEEPKNKKSSNNAKSAPLN 209
           +FRSK EVLY+LE GT +K+      NG S             + K+ K        PLN
Sbjct: 73  KFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLN 132

Query: 210 FDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLS 249
           FDFLNVPEKV W   + S+EAW PFI + K+ +S  ++W   F L++
Sbjct: 133 FDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVT 173

BLAST of CmaCh13G001260 vs. TAIR10
Match: AT5G59800.1 (AT5G59800.1 methyl-CPG-binding domain 7)

HSP 1 Score: 48.9 bits (115), Expect = 5.3e-06
Identity = 39/131 (29.77%), Postives = 58/131 (44.27%), Query Frame = 1

Query: 118 LPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEV-LYFLETGTLRKRKKSLDGN 177
           LP GWI+E++ R S +    +D+ Y +P +G +FRS   V  Y +  G +     +LD  
Sbjct: 182 LPDGWIVEEKPRRSSSH---IDRSYIEPGTGNKFRSMAAVERYLISVGNI-----TLD-- 241

Query: 178 GTSADGPEEPKNKKSSNNAKSAPLNFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQST 237
             S    E      + N  +      D  N P+KV+WVLT      +T  +    V    
Sbjct: 242 SVSMVHSERLPLLMNRNGIRFQSEVID-PNPPKKVKWVLTGSGGNMFTANVRGSNVSSLV 301

Query: 238 KREWVAAFILL 248
           K  W  AF+ L
Sbjct: 302 KHTWSEAFVSL 301

BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|659115288|ref|XP_008457481.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo])

HSP 1 Score: 366.3 bits (939), Expect = 4.3e-98
Identity = 192/258 (74.42%), Postives = 211/258 (81.78%), Query Frame = 1

Query: 1   MSAFGTSLSDPDWPR-RDPTRFNLPFSNHLPPDPLLDAGSFIDSSAARC-----GTLPSS 60
           MSA GTSL D DWPR  DPTR +LPFS+HLPPDPLL AGSFIDSS++        T+PS 
Sbjct: 25  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 84

Query: 61  PNHSRDLDLNHRKKAETSSTLRSPFRADPLNAGNGDSPATKKLSGSRGTDASPKSASSEK 120
              SRDLD   RK  +TSST RSP R DPLN+ NGDS  +KK+S S    AS KSA SE+
Sbjct: 85  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNS--ASSKSALSER 144

Query: 121 PNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLD 180
           PNWLPPGW++EDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVLYFLETGTLRKRKKSLD
Sbjct: 145 PNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLD 204

Query: 181 GNGTSADGPEEPKNKKSSNNAKSAPLNFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQ 240
           GN +S DG +EPK KKSS+NAKSAPLNFDF NVPEKVEWVLTDPSQ+AWTPFI+NEKVP+
Sbjct: 205 GNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPE 264

Query: 241 STKREWVAAFILLSRSKV 253
           STK EWV AF LL RSKV
Sbjct: 265 STKCEWVGAFQLLGRSKV 280

BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|778661468|ref|XP_011658162.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 6.8e-96
Identity = 190/257 (73.93%), Postives = 207/257 (80.54%), Query Frame = 1

Query: 1   MSAFGTSLSDPDWPR-RDPTRFNLPFSNHLPPDPLLDAGSFIDSSAAR----CGTLPSSP 60
           MSA GTS  D DWPR  DPTR +LPFS+HLPPDPLL AGSFIDSS +       T+PS  
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  NHSRDLDLNHRKKAETSSTLRSPFRADPLNAGNGDSPATKKLSGSRGTDASPKSASSEKP 120
             SRDLD   RK   TSST RSP R DPLN+ NGDS  +KK+S S    AS KSA SE+P
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNS--ASSKSALSERP 143

Query: 121 NWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDG 180
           NWLPPGW++EDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVLYFLETGTLRKRKKSLDG
Sbjct: 144 NWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDG 203

Query: 181 NGTSADGPEEPKNKKSSNNAKSAPLNFDFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQS 240
           N +S D  EEPK KKSS+NAK+APLNFDF NVPEKVEWVLTDPSQ+AWTPFI+NEKVP+S
Sbjct: 204 NPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPES 263

Query: 241 TKREWVAAFILLSRSKV 253
           TK EWV AF LL RSKV
Sbjct: 264 TKCEWVGAFQLLGRSKV 278

BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|694375413|ref|XP_009364396.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Pyrus x bretschneideri])

HSP 1 Score: 187.6 bits (475), Expect = 2.7e-44
Identity = 104/223 (46.64%), Postives = 139/223 (62.33%), Query Frame = 1

Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRADPLNAGNG 89
           P DPLL  GSFID++     +             N R   +T +  ++P +++   +G G
Sbjct: 32  PHDPLLRPGSFIDATTTATTS-------------NGRTPIQTKNPHKAPQQSNRSESGAG 91

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
                +   G  G  A  K  S    NWLPPGW ++++VR+SG TAG+ D+YYFDPVSGR
Sbjct: 92  ----AESTEGGAGR-AKRKGVSEPLENWLPPGWSVQEKVRSSGLTAGSTDRYYFDPVSGR 151

Query: 150 RFRSKIEVLYFLETGTLRKRK-KSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFLNVP 209
           RFRSKIEVL FLETGT +K K ++   + TS +G    K KKSS   K++ LNFD+ +VP
Sbjct: 152 RFRSKIEVLRFLETGTAKKAKTENASADKTSVEGSGSQKQKKSSTKPKNSALNFDYTDVP 211

Query: 210 EKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLSRSK 252
           EKVEW LTD S ++WTPFI+N+KVP+ST +EW AAF L+   K
Sbjct: 212 EKVEWALTDSSGQSWTPFIDNKKVPESTSKEWAAAFALVPSKK 236

BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|657952374|ref|XP_008357235.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Malus domestica])

HSP 1 Score: 186.8 bits (473), Expect = 4.6e-44
Identity = 104/223 (46.64%), Postives = 138/223 (61.88%), Query Frame = 1

Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRADPLNAGNG 89
           P DPLL  GSFID++     +             N R   +T +  ++P +++    G G
Sbjct: 32  PHDPLLRPGSFIDATTTATTS-------------NGRTPIQTKNPHKAPQQSNRSEPGAG 91

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
                +   G  G  A  K  S    NWLPPGW ++++VR+SG TAG+ D+YYFDPVSGR
Sbjct: 92  ----AESTEGGAGR-AKRKGVSEPLENWLPPGWSVQEKVRSSGLTAGSTDRYYFDPVSGR 151

Query: 150 RFRSKIEVLYFLETGTLRKRK-KSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFLNVP 209
           RFRSKIEVL FLETGT +K K ++   + TS +G    K KKSS   K++ LNFD+ +VP
Sbjct: 152 RFRSKIEVLRFLETGTTKKAKTENASADKTSVEGSGSQKQKKSSTKPKNSALNFDYTDVP 211

Query: 210 EKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFILLSRSK 252
           EKVEW LTD S ++WTPFI+N+KVP+ST +EW AAF L+   K
Sbjct: 212 EKVEWALTDSSGQSWTPFIDNKKVPESTSKEWAAAFALVPSKK 236

BLAST of CmaCh13G001260 vs. NCBI nr
Match: gi|645216995|ref|XP_008223622.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Prunus mume])

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 106/222 (47.75%), Postives = 141/222 (63.51%), Query Frame = 1

Query: 26  SNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRADPLN 85
           ++ +PPDPLL  GSFIDS+     T  S+  + ++     R   ++         A+P  
Sbjct: 33  NSDIPPDPLLRPGSFIDST-----TRTSNGQNVKEAQKPRRAPEQSKC-------AEPAT 92

Query: 86  AGNG-DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFD 145
           +G+G ++P      G  G     K       NWLP GW +E+RVR SGATAG+ D+YY D
Sbjct: 93  SGSGMENP-----DGGAGR-VKRKGFVEPLENWLPQGWSVEERVRASGATAGSTDRYYVD 152

Query: 146 PVSGRRFRSKIEVLYFLETGTLRKRK--KSLDGNGTSADGPEEPKNKKSSNNAKSAPLNF 205
           PVSGRRFRSK+EVLYFLETGT++++K  ++  G+ TS +G    K KKSS   KS+ LNF
Sbjct: 153 PVSGRRFRSKVEVLYFLETGTIKRKKTTENASGDKTSVEGSGSHKQKKSSTKPKSSALNF 212

Query: 206 DFLNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAF 245
           DF+NVPE V WVLTD S  +WTPFI N++VP+ST +EW AAF
Sbjct: 213 DFVNVPENVVWVLTDSSAGSWTPFIGNKEVPESTTQEWAAAF 236

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MBD6_ARATH4.1e-3236.84Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 P... [more]
MBD5_ARATH3.4e-3144.91Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 P... [more]
Match NameE-valueIdentityDescription
A0A0A0LXE4_CUCSA4.7e-9673.93Uncharacterized protein OS=Cucumis sativus GN=Csa_1G522010 PE=4 SV=1[more]
V4UFH3_9ROSI7.9e-4347.23Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029152mg PE=4 SV=1[more]
A0A067G387_CITSI7.9e-4347.23Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045019mg PE=4 SV=1[more]
A0A061H022_THECC5.7e-4144.39Methyl-CPG-binding domain protein 5, putative isoform 2 OS=Theobroma cacao GN=TC... [more]
A0A0D2SKJ0_GOSRA1.3e-4044.25Uncharacterized protein OS=Gossypium raimondii GN=B456_013G263700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G59380.12.3e-3336.84 methyl-CPG-binding domain 6[more]
AT3G46580.11.9e-3244.91 methyl-CPG-binding domain protein 5[more]
AT5G59800.15.3e-0629.77 methyl-CPG-binding domain 7[more]
Match NameE-valueIdentityDescription
gi|659115288|ref|XP_008457481.1|4.3e-9874.42PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo][more]
gi|778661468|ref|XP_011658162.1|6.8e-9673.93PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Cucumis sativus][more]
gi|694375413|ref|XP_009364396.1|2.7e-4446.64PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Pyrus x bretschn... [more]
gi|657952374|ref|XP_008357235.1|4.6e-4446.64PREDICTED: methyl-CpG-binding domain-containing protein 5 [Malus domestica][more]
gi|645216995|ref|XP_008223622.1|1.3e-4347.75PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001739Methyl_CpG_DNA-bd
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G001260.1CmaCh13G001260.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001739Methyl-CpG DNA bindingGENE3DG3DSA:3.30.890.10coord: 110..164
score: 7.9
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 110..211
score: 2.7
IPR001739Methyl-CpG DNA bindingPROFILEPS50982MBDcoord: 108..180
score: 14
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 109..164
score: 4.25
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 116..251
score: 4.6
NoneNo IPR availablePANTHERPTHR12396:SF11METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 5-RELATEDcoord: 116..251
score: 4.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh13G001260CmaCh01G006070Cucurbita maxima (Rimu)cmacmaB220