Cp4.1LG20g08550.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g08550.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Methyl-CpG-binding domain-containing family protein
Location	Cp4.1LG20 : 7417591 .. 7420362 (+)
Sequence length	974

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTTCCCTGTTTGCTTCTTCGTCTTCGTCTTGCAAAGCCCCGACCCACATGTCTGCTTTCGGAACTTCGATATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGATGACTCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCCAGAGGGACTGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGGTGAATTGATTCCTTCTCTTTTGACTAGTATCATTTCGATGTTGAATTTTGAGTTCCTTTTCTTGACTGGCGTTCTTGAGTTTTGGAAGATCGTGTTCAAAGTGGAGATGAGTCAGTTTTGGTAATTGTTCGACCATGCAAGCAATATTCTGTTCCATGGCTCTGGTTACTGAACTTCTCTATGCAATTTAATGTCCGATGATAGAACAGGGCTTTACCGTCGCTGGAATTTTTTTTCTTCTACTCTAGCCGTTGGACTCTTGGTTTAGAATTTCTACCAGTCAGGAATGATTTTTCGGATGAAAACATGAACCAATTAGAGAAATTATCATTGTTTACTGAAAATGATCTTTTGTTTTTGCTTCGAGGAGTTGGTTGTAGTAGCATTCCCTAGTCGATTGTTCTCTCATCAGTTATGGGAAAGAAGAACTGTATCAAGTAGTAAAGGGTTTAGTAATTACTTCTGGAATGTGATCATCCGAAAAATGAATCACTACCTAAATTCTCTGTCGTATTGATGGGGATTGCAGTTTTAGTTACCTGATTGGGAATTTTGAAGTTCCGTAGGAACAAGTAAACTACAAGAATTCATTTCCTTCCTCTCTAAATTTGTTTAGGGAATTCATTTTTCATTTATTTGGTATAGTATTTAAGTATGTCCATGATTTCGAGTGAGTTCATCTGACAATCCGAGTGATTCCGTCGTGCAGTTACGATATCGAACTTTCTTAGTCCTTTTCTCTGGATGGTGAACAAGCCTCGACGAACTTTGATATAGACTTAGGTGCTTCTTTGGATTTTGGAACTCTAGCTACTTACCATTTATATGAAATCAATTAGCATAACAGAGCTTGGTTGATTAGGATGGAGACTATCATTGGAAAAAGAATAACAAAAACCTCCACTGTTATGTTAGCCTGTTCATAAATGATGAGGTTCAAATTGTAGGATAGTATTTGGAACTGCCCAAGCCCACCGCTAGCAAATACTGTCTCTTTAGCCCGTTACGTATCATTGTCAGCCTCACGATTTAAAACGCGTCTACTAGGTAGAGGTTTCCATACCCTTATAAGAAATGTTTTGTTCCCTTCTCTAACCAATGTGGGATCTCACAATCCACCCCCTTAGGGCCCAACGTCTTGCTGGAACACCGCTCGGTGTTTGCTTTGATACCATTTGTAACAACCCAAGCTCCTGCTAGCAAATATTGTCCGCTTTGGCCCGTTACTTATCACCTTTATAAGGAATGTTTCGTTTCCTTCTCCAACCAATATGGGATCTCACCTCTGTATGCATGAGGGTGTACAGAGGTGAATAGCTCTTGACTCCATACTTGGACTGTTGCTTGGTGCTTGATATATGATGCTTCACTAAGAATCATGTTTGAGATGGATTATACCTTAACTTTGTATTCATATATAGCTCTGTTTAAAAGCACATTGACATTGTCAATAGACAAAACAAATGCAAGCAATTAAGTACGGTCACAAGTACCATTTAGCATTTAATGATTGACTACGAGTTCGAGTGTCGTTTGAATTGAGTGTTCTTTTTTTTTTTTCATGTCATGTTGAATTAGTTGGGAGCATGCTTGGGCCCATTTATTTCTTGAGATTCCCCTTTCTTATTATCCTGCTTTACATATTTATTAAACAAACAAACAGTAGAGAATGTCAAAGGAATCTAATCCATCCTCATGTTTCTTGCAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGGTGAGTCGAAAGCTAACATTCCTTCTTTTGCACCCAATGGGATATTCAGACCTTCTCATACGTTTTATCGCTTCGATTTACAATTGCAGTCTGCTGACGGCCCCGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTAAACTCCTCAGCCGATCAAAAGCTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAATGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTCAAAACCAGATTTGGT

mRNA sequence

CACTTTCCCTGTTTGCTTCTTCGTCTTCGTCTTGCAAAGCCCCGACCCACATGTCTGCTTTCGGAACTTCGATATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGATGACTCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCCAGAGGGACTGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCCGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTAAACTCCTCAGCCGATCAAAAGCTTGAGGTTTGAAGGCAATTTCATCCCTTTTGGACACTGTTTGGGATACCCATTCAGGTCAGAACCGTCCTCCCTCCCTCTAATGGCTTCCTATCTCCAATTCTTTTGGTCTTTTTTTTGGATGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTCAAAACCAGATTTGGT

Coding sequence (CDS)

ATGTCTGCTTTCGGAACTTCGATATCGGACCCCGACTGGCCCCGCCGAGATCCGACCCGATTCAACTTGCCTTTCTCCAACCACCTTCCGCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCGCCGCCCGATGTGGAACCCTTCCTTCTTCCCCTAACCACTCCCGAGATCTTGACCTGAATCATCGCAAGAAGGCGGAGACCTCTTCCACTCTCCGATCTCCATTCCGCGATGACTCTCTCAACGCTGGAAATGGAGATTCTCCCGCAACTAAGAAGCTCTCGGGCTCCAGAGGGACTGACGCGTCTCCGAAATCCGCTTCGTCCGAGAAGCCTAATTGGTTGCCGCCGGGCTGGATTATGGAAGATAGAGTTCGCACCTCTGGTGCTACAGCTGGAACAGTCGATAAGTACTACTTTGACCCAGTTTCAGGTCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGTAAGAAATCGTTAGATGGTAATGGGACGTCTGCTGACGGCCCCGAAGAACCCAAGAACAAAAAATCTTCCAACAATGCTAAATCTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCTTCTCAGGAGGCTTGGACGCCGTTCATCAACAACGAGAAAGTACCCCAATCTACTAAACGCGAATGGGTAGCAGCATTTAAACTCCTCAGCCGATCAAAAGCTTGA

Protein sequence

MSAFGTSISDPDWPRRDPTRFNLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSKA

Homology

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BLAST of Cp4.1LG20g08550.1 vs. Swiss-Prot
Match: MBD6_ARATH (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.0e-32
Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 1


Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNG 89
           PPDPLL +G+FI  S+A  GTL SS                     R P +     +G+G
Sbjct: 10  PPDPLLASGAFI--SSAGDGTLDSSAK-------------------RRPIQGGIGISGSG 69

Query: 90  DSPATKKLSGS----RGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDP 149
           +S      +G+      T++  +  ++   NWLPPGW +ED++RTSGATAG+VDKYY++P
Sbjct: 70  ESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEP 129

Query: 150 VSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNA-----KSAPL 209
            +GR+FRS+ EVLY+LE GT ++  K  +    + D  E   + + +  A        PL
Sbjct: 130 NTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPPPPL 189

Query: 210 NFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLS 249
           +FDF N P+KV W + +  +E W P I + KV  S +R+W  AF  ++
Sbjct: 190 DFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFIT 216

[Close]

BLAST of Cp4.1LG20g08550.1 vs. Swiss-Prot
Match: MBD5_ARATH (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-30
Identity = 75/171 (43.86%), Postives = 98/171 (57.31%), Query Frame = 1


Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
           ++PAT   S SR      K A+    NWLPP W  E RVRTSG  AGTVDK+Y++P++GR
Sbjct: 13  ENPATPVDSKSR------KRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGR 72

Query: 150 RFRSKIEVLYFLETGTLRKRKKSLDGNGTS--------ADGPEEPKNKKSSNNAKSAPLN 209
           +FRSK EVLY+LE GT +K+      NG S             + K+ K        PLN
Sbjct: 73  KFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLN 132

Query: 210 FDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSKA 253
           FDF NVPEKV W   + S+EAW PFI + K+ +S  ++W   F L++   A
Sbjct: 133 FDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVTSQNA 177

[Close]

BLAST of Cp4.1LG20g08550.1 vs. TrEMBL
Match: A0A0A0LXE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G522010 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.8e-95
Identity = 189/256 (73.83%), Postives = 207/256 (80.86%), Query Frame = 1


Query: 1   MSAFGTSISDPDWPR-RDPTRFNLPFSNHLPPDPLLDAGSFIDSSAAR----CGTLPSSP 60
           MSA GTS  D DWPR  DPTR +LPFS+HLPPDPLL AGSFIDSS +       T+PS  
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  NHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNGDSPATKKLSGSRGTDASPKSASSEKP 120
             SRDLD   RK   TSST RSP R D LN+ NGDS  +KK+S S    AS KSA SE+P
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSAS--NSASSKSALSERP 143

Query: 121 NWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDG 180
           NWLPPGW++EDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVLYFLETGTLRKRKKSLDG
Sbjct: 144 NWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDG 203

Query: 181 NGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQS 240
           N +S D  EEPK KKSS+NAK+APLNFDFFNVPEKVEWVLTDPSQ+AWTPFI+NEKVP+S
Sbjct: 204 NPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPES 263

Query: 241 TKREWVAAFKLLSRSK 252
           TK EWV AF+LL RSK
Sbjct: 264 TKCEWVGAFQLLGRSK 277

[Close]

BLAST of Cp4.1LG20g08550.1 vs. TrEMBL
Match: A0A067G387_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045019mg PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-43
Identity = 109/234 (46.58%), Postives = 144/234 (61.54%), Query Frame = 1


Query: 22  NLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRD 81
           NL  + ++PPDPLLD+G FID++        S  N +   D   +K+     T+R    +
Sbjct: 27  NLFSTVNVPPDPLLDSGFFIDAAPPAT----SGSNTTTTNDQTSKKRG----TIREHKSE 86

Query: 82  DSLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKY 141
           +       +S  T + + +R   A+          WLPPGW +EDRVRTSGATAGTVDKY
Sbjct: 87  NLATTNGTESALTPETASTRRLTATEA--------WLPPGWEIEDRVRTSGATAGTVDKY 146

Query: 142 YFDPVSGRRFRSKIEVLYFLETGTLRKRKK-----SLDGNGTSADGPEEPKNKKSSNNAK 201
           YF   SGRRFRSK EVLYFLETGT RKR+K      +D +G++A      K KK +  AK
Sbjct: 147 YFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAG---STKQKKPNIKAK 206

Query: 202 SAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRS 251
           ++ LNFD+FN PE VEWVLTDPS+ +WTPFI   +VP+S +++W AAF  L+ S
Sbjct: 207 TSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTS 241

[Close]

BLAST of Cp4.1LG20g08550.1 vs. TrEMBL
Match: V4UFH3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029152mg PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-43
Identity = 109/234 (46.58%), Postives = 144/234 (61.54%), Query Frame = 1


Query: 22  NLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRD 81
           NL  + ++PPDPLLD+G FID++        S  N +   D   +K+     T+R    +
Sbjct: 27  NLFSTVNVPPDPLLDSGFFIDAAPPAT----SGSNTTTTNDQTSKKRG----TIREHKSE 86

Query: 82  DSLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKY 141
           +       +S  T + + +R   A+          WLPPGW +EDRVRTSGATAGTVDKY
Sbjct: 87  NLATTNGTESALTPETASTRRLTATEA--------WLPPGWEIEDRVRTSGATAGTVDKY 146

Query: 142 YFDPVSGRRFRSKIEVLYFLETGTLRKRKK-----SLDGNGTSADGPEEPKNKKSSNNAK 201
           YF   SGRRFRSK EVLYFLETGT RKR+K      +D +G++A      K KK +  AK
Sbjct: 147 YFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAG---STKQKKPNIKAK 206

Query: 202 SAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRS 251
           ++ LNFD+FN PE VEWVLTDPS+ +WTPFI   +VP+S +++W AAF  L+ S
Sbjct: 207 TSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTS 241

[Close]

BLAST of Cp4.1LG20g08550.1 vs. TrEMBL
Match: A0A0D2SKJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G263700 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.7e-40
Identity = 100/227 (44.05%), Postives = 130/227 (57.27%), Query Frame = 1


Query: 29  LPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGN 88
           LP DPLL  G+FID +       P+ P  SR+  + +  + ET                 
Sbjct: 12  LPSDPLLKPGAFIDVNGQG---KPAEPTKSRNGLIPNGSQPET----------------- 71

Query: 89  GDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSG 148
              P+   ++ S   D+  K        WLPPGW++EDRVRTSGATAG VDKYY DP SG
Sbjct: 72  ---PSRGSVNSSSSADSKVKRRVVAPETWLPPGWLIEDRVRTSGATAGLVDKYYVDPTSG 131

Query: 149 RRFRSKIEVLYFLETGT---LRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFF 208
           R+FRSK EVLYFLE G+    RK+   L G+   + G   P  K+  +  K  PLNFDF 
Sbjct: 132 RKFRSKKEVLYFLENGSPPPKRKKGTELPGSEVPSTG-NSPGQKQKKSAKKQKPLNFDFI 191

Query: 209 NVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSKA 253
           NVPEKV+W LTD   ++WTPF+ N+ VP+STK++W AAF  L+  K+
Sbjct: 192 NVPEKVDWFLTDACSDSWTPFLGNDLVPESTKQDWAAAFTSLTVKKS 214

[Close]

BLAST of Cp4.1LG20g08550.1 vs. TrEMBL
Match: A0A061H022_THECC (Methyl-CPG-binding domain protein 5, putative isoform 2 OS=Theobroma cacao GN=TCM_041832 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.8e-40
Identity = 100/225 (44.44%), Postives = 130/225 (57.78%), Query Frame = 1


Query: 29  LPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGN 88
           L PDPLL +G FID++     + P++P                                N
Sbjct: 12  LTPDPLLKSGLFIDANGQNRSSKPTNP-------------------------------PN 71

Query: 89  GDSP--ATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPV 148
           G SP  A  +   S    A  K        WLP GW++EDRVRTSGATAGTVDKYY DP 
Sbjct: 72  GSSPYGAQPEARSSPLAVAKGKRRVVPPETWLPAGWLVEDRVRTSGATAGTVDKYYVDPS 131

Query: 149 SGRRFRSKIEVLYFLETG-TLRKRKKSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFF 208
           SGR+FRSK EVLYF+ETG T  KRKK ++ +GT          K+  +  K+ PLNFDF 
Sbjct: 132 SGRKFRSKKEVLYFIETGITPTKRKKGMETSGTEESTGISADTKQRKSEKKTKPLNFDFT 191

Query: 209 NVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRS 251
           NVPEKV+W+LT+ S ++WTPF+ +E+VP+ST+++W AAF  L+ S
Sbjct: 192 NVPEKVDWLLTNASVDSWTPFLGDEQVPESTRQDWAAAFTFLTAS 205

[Close]

BLAST of Cp4.1LG20g08550.1 vs. TAIR10
Match: AT5G59380.1 (AT5G59380.1 methyl-CPG-binding domain 6)

HSP 1 Score: 138.7 bits (348), Expect = 5.1e-33
Identity = 84/228 (36.84%), Postives = 125/228 (54.82%), Query Frame = 1


Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNG 89
           PPDPLL +G+FI  S+A  GTL SS                     R P +     +G+G
Sbjct: 10  PPDPLLASGAFI--SSAGDGTLDSSAK-------------------RRPIQGGIGISGSG 69

Query: 90  DSPATKKLSGS----RGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDP 149
           +S      +G+      T++  +  ++   NWLPPGW +ED++RTSGATAG+VDKYY++P
Sbjct: 70  ESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEP 129

Query: 150 VSGRRFRSKIEVLYFLETGTLRKRKKSLDGNGTSADGPEEPKNKKSSNNA-----KSAPL 209
            +GR+FRS+ EVLY+LE GT ++  K  +    + D  E   + + +  A        PL
Sbjct: 130 NTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPPPPL 189

Query: 210 NFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLS 249
           +FDF N P+KV W + +  +E W P I + KV  S +R+W  AF  ++
Sbjct: 190 DFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFIT 216

[Close]

BLAST of Cp4.1LG20g08550.1 vs. TAIR10
Match: AT3G46580.1 (AT3G46580.1 methyl-CPG-binding domain protein 5)

HSP 1 Score: 135.2 bits (339), Expect = 5.6e-32
Identity = 75/171 (43.86%), Postives = 98/171 (57.31%), Query Frame = 1


Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
           ++PAT   S SR      K A+    NWLPP W  E RVRTSG  AGTVDK+Y++P++GR
Sbjct: 13  ENPATPVDSKSR------KRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGR 72

Query: 150 RFRSKIEVLYFLETGTLRKRKKSLDGNGTS--------ADGPEEPKNKKSSNNAKSAPLN 209
           +FRSK EVLY+LE GT +K+      NG S             + K+ K        PLN
Sbjct: 73  KFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLN 132

Query: 210 FDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSKA 253
           FDF NVPEKV W   + S+EAW PFI + K+ +S  ++W   F L++   A
Sbjct: 133 FDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVTSQNA 177

[Close]

BLAST of Cp4.1LG20g08550.1 vs. NCBI nr
Match: gi|659115288|ref|XP_008457481.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo])

HSP 1 Score: 363.6 bits (932), Expect = 2.8e-97
Identity = 191/257 (74.32%), Postives = 210/257 (81.71%), Query Frame = 1


Query: 1   MSAFGTSISDPDWPR-RDPTRFNLPFSNHLPPDPLLDAGSFIDSS-----AARCGTLPSS 60
           MSA GTS+ D DWPR  DPTR +LPFS+HLPPDPLL AGSFIDSS     A    T+PS 
Sbjct: 25  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 84

Query: 61  PNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNGDSPATKKLSGSRGTDASPKSASSEK 120
              SRDLD   RK  +TSST RSP R D LN+ NGDS  +KK+S S    AS KSA SE+
Sbjct: 85  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSAS--NSASSKSALSER 144

Query: 121 PNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLD 180
           PNWLPPGW++EDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVLYFLETGTLRKRKKSLD
Sbjct: 145 PNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLD 204

Query: 181 GNGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQ 240
           GN +S DG +EPK KKSS+NAKSAPLNFDFFNVPEKVEWVLTDPSQ+AWTPFI+NEKVP+
Sbjct: 205 GNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPE 264

Query: 241 STKREWVAAFKLLSRSK 252
           STK EWV AF+LL RSK
Sbjct: 265 STKCEWVGAFQLLGRSK 279

[Close]

BLAST of Cp4.1LG20g08550.1 vs. NCBI nr
Match: gi|778661468|ref|XP_011658162.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 2.6e-95
Identity = 189/256 (73.83%), Postives = 207/256 (80.86%), Query Frame = 1


Query: 1   MSAFGTSISDPDWPR-RDPTRFNLPFSNHLPPDPLLDAGSFIDSSAAR----CGTLPSSP 60
           MSA GTS  D DWPR  DPTR +LPFS+HLPPDPLL AGSFIDSS +       T+PS  
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  NHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNGDSPATKKLSGSRGTDASPKSASSEKP 120
             SRDLD   RK   TSST RSP R D LN+ NGDS  +KK+S S    AS KSA SE+P
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSAS--NSASSKSALSERP 143

Query: 121 NWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLRKRKKSLDG 180
           NWLPPGW++EDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVLYFLETGTLRKRKKSLDG
Sbjct: 144 NWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDG 203

Query: 181 NGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQS 240
           N +S D  EEPK KKSS+NAK+APLNFDFFNVPEKVEWVLTDPSQ+AWTPFI+NEKVP+S
Sbjct: 204 NPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPES 263

Query: 241 TKREWVAAFKLLSRSK 252
           TK EWV AF+LL RSK
Sbjct: 264 TKCEWVGAFQLLGRSK 277

[Close]

BLAST of Cp4.1LG20g08550.1 vs. NCBI nr
Match: gi|694375413|ref|XP_009364396.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Pyrus x bretschneideri])

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 104/223 (46.64%), Postives = 138/223 (61.88%), Query Frame = 1


Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNG 89
           P DPLL  GSFID++     +             N R   +T +  ++P + +   +G G
Sbjct: 32  PHDPLLRPGSFIDATTTATTS-------------NGRTPIQTKNPHKAPQQSNRSESGAG 91

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
                +   G  G  A  K  S    NWLPPGW ++++VR+SG TAG+ D+YYFDPVSGR
Sbjct: 92  ----AESTEGGAGR-AKRKGVSEPLENWLPPGWSVQEKVRSSGLTAGSTDRYYFDPVSGR 151

Query: 150 RFRSKIEVLYFLETGTLRKRK-KSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVP 209
           RFRSKIEVL FLETGT +K K ++   + TS +G    K KKSS   K++ LNFD+ +VP
Sbjct: 152 RFRSKIEVLRFLETGTAKKAKTENASADKTSVEGSGSQKQKKSSTKPKNSALNFDYTDVP 211

Query: 210 EKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSK 252
           EKVEW LTD S ++WTPFI+N+KVP+ST +EW AAF L+   K
Sbjct: 212 EKVEWALTDSSGQSWTPFIDNKKVPESTSKEWAAAFALVPSKK 236

[Close]

BLAST of Cp4.1LG20g08550.1 vs. NCBI nr
Match: gi|657952374|ref|XP_008357235.1| (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Malus domestica])

HSP 1 Score: 184.9 bits (468), Expect = 1.8e-43
Identity = 104/223 (46.64%), Postives = 137/223 (61.43%), Query Frame = 1


Query: 30  PPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRDDSLNAGNG 89
           P DPLL  GSFID++     +             N R   +T +  ++P + +    G G
Sbjct: 32  PHDPLLRPGSFIDATTTATTS-------------NGRTPIQTKNPHKAPQQSNRSEPGAG 91

Query: 90  DSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKYYFDPVSGR 149
                +   G  G  A  K  S    NWLPPGW ++++VR+SG TAG+ D+YYFDPVSGR
Sbjct: 92  ----AESTEGGAGR-AKRKGVSEPLENWLPPGWSVQEKVRSSGLTAGSTDRYYFDPVSGR 151

Query: 150 RFRSKIEVLYFLETGTLRKRK-KSLDGNGTSADGPEEPKNKKSSNNAKSAPLNFDFFNVP 209
           RFRSKIEVL FLETGT +K K ++   + TS +G    K KKSS   K++ LNFD+ +VP
Sbjct: 152 RFRSKIEVLRFLETGTTKKAKTENASADKTSVEGSGSQKQKKSSTKPKNSALNFDYTDVP 211

Query: 210 EKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRSK 252
           EKVEW LTD S ++WTPFI+N+KVP+ST +EW AAF L+   K
Sbjct: 212 EKVEWALTDSSGQSWTPFIDNKKVPESTSKEWAAAFALVPSKK 236

[Close]

BLAST of Cp4.1LG20g08550.1 vs. NCBI nr
Match: gi|567864370|ref|XP_006424834.1| (hypothetical protein CICLE_v10029152mg [Citrus clementina])

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 109/234 (46.58%), Postives = 144/234 (61.54%), Query Frame = 1


Query: 22  NLPFSNHLPPDPLLDAGSFIDSSAARCGTLPSSPNHSRDLDLNHRKKAETSSTLRSPFRD 81
           NL  + ++PPDPLLD+G FID++        S  N +   D   +K+     T+R    +
Sbjct: 27  NLFSTVNVPPDPLLDSGFFIDAAPPAT----SGSNTTTTNDQTSKKRG----TIREHKSE 86

Query: 82  DSLNAGNGDSPATKKLSGSRGTDASPKSASSEKPNWLPPGWIMEDRVRTSGATAGTVDKY 141
           +       +S  T + + +R   A+          WLPPGW +EDRVRTSGATAGTVDKY
Sbjct: 87  NLATTNGTESALTPETASTRRLTATEA--------WLPPGWEIEDRVRTSGATAGTVDKY 146

Query: 142 YFDPVSGRRFRSKIEVLYFLETGTLRKRKK-----SLDGNGTSADGPEEPKNKKSSNNAK 201
           YF   SGRRFRSK EVLYFLETGT RKR+K      +D +G++A      K KK +  AK
Sbjct: 147 YFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAG---STKQKKPNIKAK 206

Query: 202 SAPLNFDFFNVPEKVEWVLTDPSQEAWTPFINNEKVPQSTKREWVAAFKLLSRS 251
           ++ LNFD+FN PE VEWVLTDPS+ +WTPFI   +VP+S +++W AAF  L+ S
Sbjct: 207 TSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTS 241

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g08550.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MBD6_ARATH	9.0e-32	36.84	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=MBD6 P...	[more]
MBD5_ARATH	1.0e-30	43.86	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 P...	[more]

BLAST of Cp4.1LG20g08550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXE4_CUCSA	1.8e-95	73.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G522010 PE=4 SV=1	[more]
A0A067G387_CITSI	2.1e-43	46.58	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045019mg PE=4 SV=1	[more]
V4UFH3_9ROSI	2.1e-43	46.58	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029152mg PE=4 SV=1	[more]
A0A0D2SKJ0_GOSRA	3.7e-40	44.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G263700 PE=4 SV=1	[more]
A0A061H022_THECC	4.8e-40	44.44	Methyl-CPG-binding domain protein 5, putative isoform 2 OS=Theobroma cacao GN=TC...	[more]

BLAST of Cp4.1LG20g08550.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59380.1	5.1e-33	36.84	methyl-CPG-binding domain 6	[more]
AT3G46580.1	5.6e-32	43.86	methyl-CPG-binding domain protein 5	[more]

BLAST of Cp4.1LG20g08550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115288\|ref\|XP_008457481.1\|	2.8e-97	74.32	PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo]	[more]
gi\|778661468\|ref\|XP_011658162.1\|	2.6e-95	73.83	PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Cucumis sativus]	[more]
gi\|694375413\|ref\|XP_009364396.1\|	1.0e-43	46.64	PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Pyrus x bretschn...	[more]
gi\|657952374\|ref\|XP_008357235.1\|	1.8e-43	46.64	PREDICTED: methyl-CpG-binding domain-containing protein 5 [Malus domestica]	[more]
gi\|567864370\|ref\|XP_006424834.1\|	3.0e-43	46.58	hypothetical protein CICLE_v10029152mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR001739	Methyl_CpG_DNA-bd

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG20g08550	Cp4.1LG20g08550	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g08550.1:five_prime_utr:001	Cp4.1LG20g08550.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g08550.1:cds:003	Cp4.1LG20g08550.1:cds:003	CDS
Cp4.1LG20g08550.1:cds:002	Cp4.1LG20g08550.1:cds:002	CDS
Cp4.1LG20g08550.1:cds:001	Cp4.1LG20g08550.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g08550.1:three_prime_utr:001	Cp4.1LG20g08550.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g08550.1	Cp4.1LG20g08550.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	GENE3D	G3DSA:3.30.890.10		coord: 110..163 score: 9.0
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 110..210 score: 8.2
IPR001739	Methyl-CpG DNA binding	PROFILE	PS50982	MBD	coord: 108..180 score: 14
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 109..164 score: 3.92
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 116..251 score: 1.2
None	No IPR available	PANTHER	PTHR12396:SF11	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 5-RELATED	coord: 116..251 score: 1.2