Cp4.1LG20g00160 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g00160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	UPF0426 protein, chloroplastic
Location	Cp4.1LG20 : 162055 .. 164948 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAAAAAACATTTATTATTTTCACTTGAGAAGTTACGCAATCAATGAATGATTCCATCTTTTATCTTTATTATTGCGCTTACTCAAGAGCTTTAAACTTTTTGAGTTATGGGCCTTTACCTGAAAGCCCAAATCATTTTAAGCCCAAATCATTTTGAGCCCAATTAATCTAACATTATTACATGGACCGGACCGGATGTGCAGCGGTTCATCCATTTTGGTAGCTGCATCTGTCGGTTTGTTTTTTCTGGTAGCCGTGTTAAATTTTAAGCCGAATGTAGGAAGGCAACAAGTCCAAGTGAGTGTTTCTGGAAATGTTTGGCCAATTGCAAGAAGCAACAAGGGGGAGTTTTAAGCCATTAACTCATTTCTAACGCGAATATCTTCATCCTCCTCTTCTTCGATCCGAAGCAGCTCCATTTGCGTCATCGGAGACTCTCATCCATGGCCGGTCTTCTTCTCCACTCCTCTTCAACTGCCAGCGTTCTGGTATGCCCATCTCTAATTTTTAATTTCTTTAATCTCTTCGTCTTCCTCTTCTTCGATGTTGCTGATTTTCCTGTTTGATTCTATTGAAAGCTTGGAGGAATGGGGAAATTTAGGGAAGGGAATCGTCATTTGATTTTTTCGCCCAAGAAACCTATGCGTGCTAACTGTCTTCGTCTCGGCTGCAGTAATTCAACGAATGGCATCTGCGCTTTCCTTTTCAATCCTTTGGAGGATCCTGTTGTCAAAGAAGCTCTTAAGGTATTCTATTAACTCTTCCATGAAAAACCCTTCCTCGGTTTTGGCTGTTGTTCTACTTGGATTAAGATCATTCTTGCTTGCTGAGTATGTGCAAAATATGGAGGGGTTCATTAATTTCCCTGTGCATTCTCATAGCACTTAAAACACAGATTATCTTTGATAATTGCTTGCCTCTTCGAGTAGAGCATAAACATGGTCACATTTCTACATGTGCGAGTTAAGATGGATCTATGATTTTTCCAGTCATGTCATTGCTGAAACTATTAGAACTATGTAGGGCCGTAGGGAATCTATTTACTGGTAAAGGAAAGTCAATTTAACCATTTAATCTCTCTGATGAACACCACTGCATAACGTAAGTATTCTTGAACCAACTCTTATGATGTGCAAATAATAATCTTGAACTAACTTCAAAGGAGAATAAAAATGTCTTCATGATCTGTAAGGTTGAGAAAAATGTGTCATGATGTTCATAGCTTGAAAACCTCTAGTAATAGAGAACTTCAATCACATTCCTCGCTTTTGGGAGGTGGGGAGTAAAGCTGTTTGTACTGTTTGGGTTTGGGAAAATTTTTGTGAGATCCTACATCGGTTGAGGAGGAGAACGAAACATTCTTTATAGGTGTAGAAACCTCTCATTAACAGACGTATTCTAAAAACCTTGAAAGGAACCTCGAAAGGAAAAGTCCAAAGAGGACAATAGTTGGTAGTTGGTAGGTTTGGGTTGTTACGAATGGTATTAGAGACAAACATCGGGTGATGTGCCAGCGAGAAGGCTGAGCCTCGAAGGGGGTGGACATGAGGCGGTGTGCCAACAAGGGCGCTGGGCCCCGAAGGAGGTGGATTGGGGGGCCTCACATCAATTAGAGAAGGGAACGAGTATCAGCGAGGACGCTAGGCCTCAGAAGGGGGTGGATTGTAAGATCCTACATCAGTTGGGGAGGAGAACGAAACATTCTCTAGAAGGGTGTGGGTCTATCATACGCGTTTTAAAAAACTTGAGGGGAAGGTCAAAGGAAACAATATTTGCTAGCGGTAAGGCTTGGGTGTTATGAATTCAGCTGATTTTTGCCTTGGTGCTTGGTAAGACTGAAATTTTCTGGAACCTTATTGGCATCTCATCACTGAGATCCGTCGTCTCCACCATGGTGTGTTAGCTTTCACACCATGATGTTGCTGAACTGACTATTTGGCACCAGGCTTATCTGAAATATAATGTTGGTTGATTTTCAAATTCCTTACTGCTATGGACAGTGCTGAATACATTTCCATGGAACTGAGGCAGTCCCAATCAGTTGTTGCGATTGAATGTTAGAGAGTTTGTTATTGTTTTTTCATCATTTATAAAGTAAACAAGCTCTGCCAGTTCAAATTCTTACTGTTGCATTAGGATTCTTTGTTGGTTCCTTCTGGAGTATATAGATTAAGATGATGAGGCTCGTCAGCTGGGATATGTGAATTCCTTAGATGAAAACACTCATTCTACTATCAAATGCTTCATATAATGTGAAAGTAATTTCAATCGTTGTAGGAGCCAGTTGCGTTCGCAGGTGGGCTATTTGCTGGGCTTCTAAGGCTTGATTTGAACGAAGATCCATTAAAGGAATGGGTTAAGAAGACAGTAGAATCTGCAGGAATCACAGAGGAAGTTGACACCCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATCGAGATTGAATGATCCCATGAATATAAACTGGAAAAGTGGGGATAAAAGGGTATCTGATCTGATTCGACTCAATATTACTATGGCTCCCTTGATTTAGAATAAGAAATGAAATGGTTTAGGAGTTAACCCCTTTTCATAATCCAAATACTCTACGACTTCCTCTAAAAATACTTCCCCATGCTGTTCTATTTATTTCTCGATTCAGGAGGAAACGCATCATTAGTGTTTACATATTTTTGCAAAAGTACTTTTAGACCAACATAAGCCTGCACACACTAGTTTTTGTGAATTTTTTATGGAGGAAGCAAATGCCCATAGAACACAAGGAGTTCCCTAGTAAAACATCAAGTATAGGACCATTGGTGATTCGGGTCATTCGGTTCACATAATCGAGTTCAAGCCTTAAAAAACTTTGGAGTTCTTGCATCTTTTGTCCTCGTTTCCAAAAACAAT

mRNA sequence

ATTAAAAAAACATTTATTATTTTCACTTGAGAAGTTACGCAATCAATGAATGATTCCATCTTTTATCTTTATTATTGCGCTTACTCAAGAGCTTTAAACTTTTTGAGTTATGGGCCTTTACCTGAAAGCCCAAATCATTTTAAGCCCAAATCATTTTGAGCCCAATTAATCTAACATTATTACATGGACCGGACCGGATGTGCAGCGGTTCATCCATTTTGGTAGCTGCATCTGTCGGTTTGTTTTTTCTGGTAGCCGTGTTAAATTTTAAGCCGAATGTAGGAAGGCAACAAGTCCAAGTGAGTGTTTCTGGAAATGTTTGGCCAATTGCAAGAAGCAACAAGGGGGAGTTTTAAGCCATTAACTCATTTCTAACGCGAATATCTTCATCCTCCTCTTCTTCGATCCGAAGCAGCTCCATTTGCGTCATCGGAGACTCTCATCCATGGCCGGTCTTCTTCTCCACTCCTCTTCAACTGCCAGCGTTCTGCTTGGAGGAATGGGGAAATTTAGGGAAGGGAATCGTCATTTGATTTTTTCGCCCAAGAAACCTATGCGTGCTAACTGTCTTCGTCTCGGCTGCAGTAATTCAACGAATGGCATCTGCGCTTTCCTTTTCAATCCTTTGGAGGATCCTGTTGTCAAAGAAGCTCTTAAGGAGCCAGTTGCGTTCGCAGGTGGGCTATTTGCTGGGCTTCTAAGGCTTGATTTGAACGAAGATCCATTAAAGGAATGGGTTAAGAAGACAGTAGAATCTGCAGGAATCACAGAGGAAGTTGACACCCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATCGAGATTGAATGATCCCATGAATATAAACTGGAAAAGTGGGGATAAAAGGGTATCTGATCTGATTCGACTCAATATTACTATGGCTCCCTTGATTTAGAATAAGAAATGAAATGGTTTAGGAGTTAACCCCTTTTCATAATCCAAATACTCTACGACTTCCTCTAAAAATACTTCCCCATGCTGTTCTATTTATTTCTCGATTCAGGAGGAAACGCATCATTAGTGTTTACATATTTTTGCAAAAGTACTTTTAGACCAACATAAGCCTGCACACACTAGTTTTTGTGAATTTTTTATGGAGGAAGCAAATGCCCATAGAACACAAGGAGTTCCCTAGTAAAACATCAAGTATAGGACCATTGGTGATTCGGGTCATTCGGTTCACATAATCGAGTTCAAGCCTTAAAAAACTTTGGAGTTCTTGCATCTTTTGTCCTCGTTTCCAAAAACAAT

Coding sequence (CDS)

ATGGCCGGTCTTCTTCTCCACTCCTCTTCAACTGCCAGCGTTCTGCTTGGAGGAATGGGGAAATTTAGGGAAGGGAATCGTCATTTGATTTTTTCGCCCAAGAAACCTATGCGTGCTAACTGTCTTCGTCTCGGCTGCAGTAATTCAACGAATGGCATCTGCGCTTTCCTTTTCAATCCTTTGGAGGATCCTGTTGTCAAAGAAGCTCTTAAGGAGCCAGTTGCGTTCGCAGGTGGGCTATTTGCTGGGCTTCTAAGGCTTGATTTGAACGAAGATCCATTAAAGGAATGGGTTAAGAAGACAGTAGAATCTGCAGGAATCACAGAGGAAGTTGACACCCAAGGATCTGTACAAGAGGATGGCCCAACCGAGATCGAGATTGAATGA

Protein sequence

MAGLLLHSSSTASVLLGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNPLEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQEDGPTEIEIE

Homology

[Close]

BLAST of Cp4.1LG20g00160 vs. Swiss-Prot
Match: Y1815_ARATH (UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana GN=At1g28150 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.4e-19
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1


Query: 58  FNPLEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGS 117
           FN  ++P++ EALKEP+AF GG+FAGLLRLDLNE+PLK+WV +TVE++GIT EEVD  G 
Sbjct: 50  FNLPQEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDADGV 109

Query: 118 V--QEDGPTEIEIE 129
           V   ED P +IEIE
Sbjct: 110 VSNDEDSPQQIEIE 123

[Close]

BLAST of Cp4.1LG20g00160 vs. Swiss-Prot
Match: Y294_SYNY3 (UPF0426 protein ssl0294 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ssl0294 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.7e-07
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 64  PVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITE--EVDTQGSVQEDG 123
           PV +E  ++P+AFAGG  +G+LRL L +DPLK+W++K     G+T+    D   + Q++ 
Sbjct: 8   PVTRELCQQPIAFAGGFVSGVLRLKLTDDPLKKWLQK----QGVTDFSGADINQTAQDNR 67

Query: 124 PTEIEIE 129
           P  I+I+
Sbjct: 68  PQSIDID 70

[Close]

BLAST of Cp4.1LG20g00160 vs. TrEMBL
Match: A0A0A0LT92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032470 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 6.4e-49
Identity = 102/128 (79.69%), Postives = 111/128 (86.72%), Query Frame = 1


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNP 60
           MA LLLHSSSTASVL G MGK +  N + I S KKP+R++  RLG +NSTNGI AF FNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKGRNHNSILSSKKPVRSSFFRLGSNNSTNGISAFFFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           + DPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+ EEVDTQGSVQED
Sbjct: 61  VGDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLREEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Cp4.1LG20g00160 vs. TrEMBL
Match: A0A059AVF1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00663 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.9e-23
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 16  LGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNPLEDPVVKEALKEPVA 75
           LG   +    +R L FS +K  R    RLG     NG+ AF FNP E+ ++KEALKEPVA
Sbjct: 87  LGDRRRLNPPSRSLFFSTEK--RVFGRRLGDYRG-NGVRAFFFNPTEERIIKEALKEPVA 146

Query: 76  FAGGLFAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGS--VQEDGPTEIEIE 129
           F GG+FAG+LRLDLNEDPL+EWV +TVE++GI+ EE+D +GS   +ED P +IEIE
Sbjct: 147 FMGGMFAGILRLDLNEDPLREWVTRTVEASGISQEELDAEGSKEAEEDAPQQIEIE 199

[Close]

BLAST of Cp4.1LG20g00160 vs. TrEMBL
Match: A0A059AVP2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00663 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.9e-23
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 16  LGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNPLEDPVVKEALKEPVA 75
           LG   +    +R L FS +K  R    RLG     NG+ AF FNP E+ ++KEALKEPVA
Sbjct: 88  LGDRRRLNPPSRSLFFSTEK--RVFGRRLGDYRG-NGVRAFFFNPTEERIIKEALKEPVA 147

Query: 76  FAGGLFAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGS--VQEDGPTEIEIE 129
           F GG+FAG+LRLDLNEDPL+EWV +TVE++GI+ EE+D +GS   +ED P +IEIE
Sbjct: 148 FMGGMFAGILRLDLNEDPLREWVTRTVEASGISQEELDAEGSKEAEEDAPQQIEIE 200

[Close]

BLAST of Cp4.1LG20g00160 vs. TrEMBL
Match: A0A0S3SPR6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G150600 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 7.9e-23
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 1


Query: 21  KFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNPLEDPVVKEALKEPVAFAGGL 80
           K ++  R L   P     +  +R     + NG+ AF FNP +DP+VK+ALKEPVAF GG+
Sbjct: 18  KSKQEARLLSHGPSIGGISRTIRRTGKRNGNGVKAFFFNPEQDPIVKDALKEPVAFLGGM 77

Query: 81  FAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGSVQEDGPTEIEIE 129
           FAG+LRLDLNEDPLKEWV +TVE+AGI+ EEV+T+ S  E  P EI+IE
Sbjct: 78  FAGVLRLDLNEDPLKEWVTRTVEAAGISEEEVNTEESTTEAAPLEIQIE 126

[Close]

BLAST of Cp4.1LG20g00160 vs. TrEMBL
Match: C6T1Y8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G174200 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 47  SNSTNGICAFLFNPLEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG 106
           + + NG+ AF FNP +DP+VKEALKEPVAF GG+FAG+LRLDLNE+PLKEWV +TVE+AG
Sbjct: 49  NGNRNGVKAFFFNPEQDPIVKEALKEPVAFLGGMFAGILRLDLNEEPLKEWVTRTVEAAG 108

Query: 107 IT-EEVDTQGSVQEDGPTEIEIE 129
           I+ EE +T+ S  E+ P EI+IE
Sbjct: 109 ISEEEANTEESTTEEAPQEIQIE 131

[Close]

BLAST of Cp4.1LG20g00160 vs. TAIR10
Match: AT1G28150.1 (AT1G28150.1 unknown protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-20
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1


Query: 58  FNPLEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGS 117
           FN  ++P++ EALKEP+AF GG+FAGLLRLDLNE+PLK+WV +TVE++GIT EEVD  G 
Sbjct: 50  FNLPQEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDADGV 109

Query: 118 V--QEDGPTEIEIE 129
           V   ED P +IEIE
Sbjct: 110 VSNDEDSPQQIEIE 123

[Close]

BLAST of Cp4.1LG20g00160 vs. NCBI nr
Match: gi|659066342|ref|XP_008439829.1| (PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 106/128 (82.81%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNP 60
           MA LLLHSSSTASVL G MGK +  + H I S KKPMR++ LRLG +NSTNGI AF FNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKARSHHSILSSKKPMRSSFLRLGSNNSTNGISAFFFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           +EDPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+TEEVDTQGSVQED
Sbjct: 61  VEDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLTEEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Cp4.1LG20g00160 vs. NCBI nr
Match: gi|449439251|ref|XP_004137400.1| (PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 9.2e-49
Identity = 102/128 (79.69%), Postives = 111/128 (86.72%), Query Frame = 1


Query: 1   MAGLLLHSSSTASVLLGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNP 60
           MA LLLHSSSTASVL G MGK +  N + I S KKP+R++  RLG +NSTNGI AF FNP
Sbjct: 1   MAALLLHSSSTASVLFGEMGKLKGRNHNSILSSKKPVRSSFFRLGSNNSTNGISAFFFNP 60

Query: 61  LEDPVVKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGITEEVDTQGSVQED 120
           + DPV+KEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAG+ EEVDTQGSVQED
Sbjct: 61  VGDPVLKEALKEPVAFAGGLFAGLLRLDLNEDPLKEWVKKTVESAGLREEVDTQGSVQED 120

Query: 121 GPTEIEIE 129
           GPTEIEIE
Sbjct: 121 GPTEIEIE 128

[Close]

BLAST of Cp4.1LG20g00160 vs. NCBI nr
Match: gi|965608369|dbj|BAT94860.1| (hypothetical protein VIGAN_08150600 [Vigna angularis var. angularis])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 1


Query: 21  KFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNPLEDPVVKEALKEPVAFAGGL 80
           K ++  R L   P     +  +R     + NG+ AF FNP +DP+VK+ALKEPVAF GG+
Sbjct: 18  KSKQEARLLSHGPSIGGISRTIRRTGKRNGNGVKAFFFNPEQDPIVKDALKEPVAFLGGM 77

Query: 81  FAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGSVQEDGPTEIEIE 129
           FAG+LRLDLNEDPLKEWV +TVE+AGI+ EEV+T+ S  E  P EI+IE
Sbjct: 78  FAGVLRLDLNEDPLKEWVTRTVEAAGISEEEVNTEESTTEAAPLEIQIE 126

[Close]

BLAST of Cp4.1LG20g00160 vs. NCBI nr
Match: gi|629091923|gb|KCW57918.1| (hypothetical protein EUGRSUZ_H00663 [Eucalyptus grandis])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 16  LGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNPLEDPVVKEALKEPVA 75
           LG   +    +R L FS +K  R    RLG     NG+ AF FNP E+ ++KEALKEPVA
Sbjct: 88  LGDRRRLNPPSRSLFFSTEK--RVFGRRLGDYRG-NGVRAFFFNPTEERIIKEALKEPVA 147

Query: 76  FAGGLFAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGS--VQEDGPTEIEIE 129
           F GG+FAG+LRLDLNEDPL+EWV +TVE++GI+ EE+D +GS   +ED P +IEIE
Sbjct: 148 FMGGMFAGILRLDLNEDPLREWVTRTVEASGISQEELDAEGSKEAEEDAPQQIEIE 200

[Close]

BLAST of Cp4.1LG20g00160 vs. NCBI nr
Match: gi|702433953|ref|XP_010069537.1| (PREDICTED: UPF0426 protein At1g28150, chloroplastic isoform X1 [Eucalyptus grandis])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1


Query: 16  LGGMGKFREGNRHLIFSPKKPMRANCLRLGCSNSTNGICAFLFNPLEDPVVKEALKEPVA 75
           LG   +    +R L FS +K  R    RLG     NG+ AF FNP E+ ++KEALKEPVA
Sbjct: 21  LGDRRRLNPPSRSLFFSTEK--RVFGRRLGDYRG-NGVRAFFFNPTEERIIKEALKEPVA 80

Query: 76  FAGGLFAGLLRLDLNEDPLKEWVKKTVESAGIT-EEVDTQGS--VQEDGPTEIEIE 129
           F GG+FAG+LRLDLNEDPL+EWV +TVE++GI+ EE+D +GS   +ED P +IEIE
Sbjct: 81  FMGGMFAGILRLDLNEDPLREWVTRTVEASGISQEELDAEGSKEAEEDAPQQIEIE 133

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g00160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1815_ARATH	3.4e-19	64.86	UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana GN=At1g28150 PE...	[more]
Y294_SYNY3	6.7e-07	40.30	UPF0426 protein ssl0294 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ssl02...	[more]

BLAST of Cp4.1LG20g00160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT92_CUCSA	6.4e-49	79.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G032470 PE=4 SV=1	[more]
A0A059AVF1_EUCGR	7.9e-23	55.17	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00663 PE=4 SV=1	[more]
A0A059AVP2_EUCGR	7.9e-23	55.17	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00663 PE=4 SV=1	[more]
A0A0S3SPR6_PHAAN	7.9e-23	55.05	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G150600 PE=...	[more]
C6T1Y8_SOYBN	1.3e-22	65.06	Uncharacterized protein OS=Glycine max GN=GLYMA_10G174200 PE=2 SV=1	[more]

BLAST of Cp4.1LG20g00160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28150.1	1.9e-20	64.86	unknown protein	[more]

BLAST of Cp4.1LG20g00160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066342\|ref\|XP_008439829.1\|	1.5e-51	82.81	PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis melo]	[more]
gi\|449439251\|ref\|XP_004137400.1\|	9.2e-49	79.69	PREDICTED: UPF0426 protein At1g28150, chloroplastic [Cucumis sativus]	[more]
gi\|965608369\|dbj\|BAT94860.1\|	1.1e-22	55.05	hypothetical protein VIGAN_08150600 [Vigna angularis var. angularis]	[more]
gi\|629091923\|gb\|KCW57918.1\|	1.1e-22	55.17	hypothetical protein EUGRSUZ_H00663 [Eucalyptus grandis]	[more]
gi\|702433953\|ref\|XP_010069537.1\|	1.1e-22	55.17	PREDICTED: UPF0426 protein At1g28150, chloroplastic isoform X1 [Eucalyptus grand...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0010287	plastoglobule
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g00160.1	Cp4.1LG20g00160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35996	FAMILY NOT NAMED	coord: 55..128 score: 5.5
None	No IPR available	PANTHER	PTHR35996:SF1	SUBFAMILY NOT NAMED	coord: 55..128 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g00160	Cucsa.112550	Cucumber (Gy14) v1	cgycpeB0259
Cp4.1LG20g00160	CmaCh13G011160	Cucurbita maxima (Rimu)	cmacpeB234
Cp4.1LG20g00160	CmoCh13G011680	Cucurbita moschata (Rifu)	cmocpeB201
Cp4.1LG20g00160	Cla018629	Watermelon (97103) v1	cpewmB522
Cp4.1LG20g00160	Csa1G032470	Cucumber (Chinese Long) v2	cpecuB517
Cp4.1LG20g00160	MELO3C001965	Melon (DHL92) v3.5.1	cpemeB471
Cp4.1LG20g00160	ClCG04G012450	Watermelon (Charleston Gray)	cpewcgB470
Cp4.1LG20g00160	CSPI01G05390	Wild cucumber (PI 183967)	cpecpiB519
Cp4.1LG20g00160	Lsi02G000530	Bottle gourd (USVL1VR-Ls)	cpelsiB424
Cp4.1LG20g00160	MELO3C001965.2	Melon (DHL92) v3.6.1	cpemedB553
Cp4.1LG20g00160	CsaV3_1G005250	Cucumber (Chinese Long) v3	cpecucB0636
Cp4.1LG20g00160	Bhi08G001634	Wax gourd	cpewgoB0653
Cp4.1LG20g00160	CsGy1G005140	Cucumber (Gy14) v2	cgybcpeB081
Cp4.1LG20g00160	Carg04720	Silver-seed gourd	carcpeB0544

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g00160	Cucurbita pepo (Zucchini)	cpecpeB431
Cp4.1LG20g00160	Cucurbita pepo (Zucchini)	cpecpeB433
Cp4.1LG20g00160	Cucurbita pepo (Zucchini)	cpecpeB442
Cp4.1LG20g00160	Cucurbita maxima (Rimu)	cmacpeB484
Cp4.1LG20g00160	Cucurbita maxima (Rimu)	cmacpeB485
Cp4.1LG20g00160	Cucurbita moschata (Rifu)	cmocpeB444