Cp4.1LG19g00790 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g00790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING/U-box superfamily protein
LocationCp4.1LG19 : 543816 .. 546121 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTGTGAAATTCTTCATTTCTTGTGGGTCTCATTTTAATTACTCATTTTTTGAGGGGCTCATTTGCAATTACTCATTTCTTGTGGGTCTCATTTTAATTACTCATTTTTTGAGGGTCTCATTTGCAATTACTCTGCTTACACGTGTATGCCCCCACTGCTACTTGTAGCATCATTAACAATAATAACACTAATTCTTTTTGTTGGAAATATTCTTTTTCATTTTTTTTATTTTAAAAATTGAATTTATAAATTCTACTTCTTATAAAAATATTTAATTTGTTATTTTCTTTTTATCAATATTTTAAAACTTAAATTATTAGTTTTTTTTTTTTATTTAACTAAAAGTTTAATTATTTCTTTAAAATATTATAATTATTGTAATATAATTGTGAAAAGAAATACAAATTTTCAAAAAGGAGGTGAAGCAGAAAAATCAAACAATTAATCCTCTAATTATTATTTTTAAAGAAAAAAAATATATCCTTTTTAGGGACCTAGCAAATAGCATTTGAAAAATCAAAACAACATGTCGATTTCAAATATCGATATCAATCATCCTTCGGGCTTCATTGTCGGTGGCCTACCTCGAGCTCGTTCTCAAATCTAACGTATTTGCGGTGGAAAAATTCCCATTCTACCCCTACTTCATGACTTTTTTTTCTTTTTCTTTTTTCACCATCAAAATTTAGATTAATTATTTTTAAGTTAGCTTTTGAAAATAGGTTAGACTTACCATTTAATTTTCAACCAATTACTTACCAACTTCAATTTGATTTCGATGTTTTTAAACGTTTTAAATTAGTCTATATTAGTTGAGTTTAATTTCAATTTAGTCGAGATGATTTGGATTTAATTATGTTATAAAGTTTGGGTTANAACAATCAACAATCAACAATCAAAAACTCACTTACCAATCAGTACCAAACTCGATCCTCAGAATGTCTTTTGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTG

mRNA sequence

CCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTG

Coding sequence (CDS)

CCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTG

Protein sequence

PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELDYIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPLPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELDYIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL
Homology
[Close]
BLAST of Cp4.1LG19g00790 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-06
Identity = 26/81 (32.10%), Postives = 39/81 (48.15%), Query Frame = 1 

Query: 370 ETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYH 429
           +  +LE+       V+ +   + +CS+CL E   +  G            +  +CGHV+H
Sbjct: 89  DPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR-----------VLPKCGHVFH 148

Query: 430 ESCIFNWLHHNSSCPLCRAPL 451
             CI  W    SSCPLCRAP+
Sbjct: 149 VDCIDTWFRSRSSCPLCRAPV 158

[Close]
BLAST of Cp4.1LG19g00790 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.0e-06
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 386 ENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHH-NSSCP 445
           + G    DC +CL +L            K+ EEV +++C HV+H+ C+  WLH  N +CP
Sbjct: 78  DGGGGGSDCVVCLSKL------------KEGEEVRKLECRHVFHKKCLEGWLHQFNFTCP 131

Query: 446 LCRAPL 451
           LCR+ L
Sbjct: 138 LCRSAL 131

[Close]
BLAST of Cp4.1LG19g00790 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-06
Identity = 25/76 (32.89%), Postives = 37/76 (48.68%), Query Frame = 1 

Query: 164 EEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRA 223
           EE  +CS+CL E      G            +  +CGH +H  CI  W    S+CPLCRA
Sbjct: 103 EEKEECSVCLSEFEEEDEGR-----------LLPKCGHSFHVDCIDTWFRSRSTCPLCRA 162

Query: 224 PLPIQYRIYGYTSAAS 240
           P+   +++    S++S
Sbjct: 163 PVQPPFQVIETGSSSS 167

[Close]
BLAST of Cp4.1LG19g00790 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36
Identity = 99/238 (41.60%), Postives = 138/238 (57.98%), Query Frame = 1 

Query: 226 PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPILLRNLLFP 285
           PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I   N LF 
Sbjct: 8   PIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFY 67

Query: 286 LRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELD 345
           L L++L +P+F   Y+ Q+LS LN+R    + +A RI S+ + +   N ET+FH + E+D
Sbjct: 68  LSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 127

Query: 346 YIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTE-----------KVEENGEEMG 405
           +IRLI W     G         A  EET +L+EA P  +           + EE  EE+G
Sbjct: 128 FIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELG 187

Query: 406 DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           DCSICL+EL+            ++ EV+R+ CGHVYHESCIF WL +++SCPLCR PL
Sbjct: 188 DCSICLDELS-----------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]
BLAST of Cp4.1LG19g00790 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36
Identity = 99/238 (41.60%), Postives = 138/238 (57.98%), Query Frame = 1 

Query: 226 PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPILLRNLLFP 285
           PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I   N LF 
Sbjct: 8   PIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFY 67

Query: 286 LRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELD 345
           L L++L +P+F   Y+ Q+LS LN+R    + +A RI S+ + +   N ET+FH + E+D
Sbjct: 68  LSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 127

Query: 346 YIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTE-----------KVEENGEEMG 405
           +IRLI W     G         A  EET +L+EA P  +           + EE  EE+G
Sbjct: 128 FIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELG 187

Query: 406 DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           DCSICL+EL+            ++ EV+R+ CGHVYHESCIF WL +++SCPLCR PL
Sbjct: 188 DCSICLDELS-----------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]
BLAST of Cp4.1LG19g00790 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 78/209 (37.32%), Postives = 114/209 (54.55%), Query Frame = 1 

Query: 21  VLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFLQVYVAQLLSL 80
           VL++QL Y  R ISVS  S    L ET P    N LF L + +L +P+F   ++ Q L  
Sbjct: 22  VLEVQLSYLERAISVSSFSQ-RILYETQPTPFNNALFYLSVHQLQHPLF---HIRQFLYS 81

Query: 81  LNVRSPVREVIAERIVSYTILIAGGNR--ETSFHTVLELDYIRLITWTEENHGLYQGWSN 140
           LN+R   RE IA +I S+   +  GN    ++F+ +  +D +R+I   E+     +GW  
Sbjct: 82  LNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRA--EGWRG 141

Query: 141 DNALGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQ 200
                   A+   ++  +E      EE GDCS+CL+EL+            ++ EVIR+ 
Sbjct: 142 -------VAVERLSKLKSE------EEKGDCSVCLDELDC-----------EKREVIRIP 197

Query: 201 CGHVYHESCIFNWLHHNSSCPLCRAPLPI 228
           CGHVYHESCIF WL+ ++SCPLCR+  P+
Sbjct: 202 CGHVYHESCIFKWLNSSNSCPLCRSSFPL 197

[Close]
BLAST of Cp4.1LG19g00790 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.1e-22
Identity = 75/224 (33.48%), Postives = 122/224 (54.46%), Query Frame = 1 

Query: 236 SAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFL 295
           SAA+  QP Q ++L+L +F  ++ +SP   +  LQ+T+PIL+ + L    L+EL +P F+
Sbjct: 20  SAATNGQPLQFVELRLGHFS-QLVLSPSHQI--LQQTSPILISDTLIRFPLRELEDPPFI 79

Query: 296 -QVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELDYIRLITWTEEN 355
               + + LS  N+   V + I  +I S+   +  GN  ++FH +  LD++         
Sbjct: 80  SHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV--------- 139

Query: 356 HGLYQGWSNDNALGEETAILEEA------RPVTEKVEEN-GEEMGD-CSICLEELNGNGN 415
              Y  W + +   +  A+ + A      R + EK + N GEEM D CS+C E+L     
Sbjct: 140 ---YTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDL----- 199

Query: 416 GNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
              +G+ +K +EV R+ CGH++H+SCI  WL  ++SCPLCR  L
Sbjct: 200 ---HGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGEL 220

[Close]
BLAST of Cp4.1LG19g00790 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.8e-20
Identity = 76/232 (32.76%), Postives = 122/232 (52.59%), Query Frame = 1 

Query: 233 GYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNP 292
           G +S A+  QP Q +QL+LR+F + +  +P   +  LQ+T+P L+ + L P  L EL +P
Sbjct: 17  GKSSLATDGQPLQFVQLRLRHFGQLVH-TPSQQI--LQQTSPTLISDTLIPFSLWELEDP 76

Query: 293 VFLQVY-VAQLLSLLNVRSPVREVIAERIVSYT---ILIAGGNRETSFHTVLELDYIRLI 352
            F+  + + + LS  ++ + V + I   I S+    +L A  N   +FH + ++D +   
Sbjct: 77  PFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVDIV--- 136

Query: 353 TWTEENHGLYQGWSNDNALGEETAILEEA------RPVTEKVEENG--EEMGD--CSICL 412
                    Y  W + +   +  A+ + A      R + EK + NG  E+ GD  CS+C 
Sbjct: 137 ---------YTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCY 196

Query: 413 EELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           E+L G        E +K +EV R+ CGH+YH+SCI  WL  ++SCPLCR  L
Sbjct: 197 EQLYGKREN----ENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRREL 229

[Close]
BLAST of Cp4.1LG19g00790 vs. TAIR10
Match: AT4G12190.1 (AT4G12190.1 RING/U-box superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-08
Identity = 27/70 (38.57%), Postives = 36/70 (51.43%), Query Frame = 1 

Query: 381 TEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHN 440
           TE+++    E   CSICLE L           G K  ++ RM C HV+H  C+  WL   
Sbjct: 9   TEELKSLKMETEPCSICLESLVS---------GPKPRDITRMTCSHVFHNGCLLEWLKRK 68

Query: 441 SSCPLCRAPL 451
           ++CPLCR  L
Sbjct: 69  NTCPLCRTEL 69

[Close]
BLAST of Cp4.1LG19g00790 vs. TAIR10
Match: AT3G30460.1 (AT3G30460.1 RING/U-box superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-08
Identity = 39/123 (31.71%), Postives = 57/123 (46.34%), Query Frame = 1 

Query: 113 TVLELDYIRLITWTEE--NHGLYQGWSNDN----ALGEETAILE-----EARPVTEKVEE 172
           T+++ +Y+R + + +   NHG+    S D      LG  ++        E  PV E   E
Sbjct: 28  TLIDDEYLRYLHYLDSRSNHGVNTFGSYDEIFGLVLGNSSSCTRWLNAGEELPVVEFTAE 87

Query: 173 NGEEMG--DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCP 223
              E G   C+IC EEL  N            E +  + C H YH+ CI NWL + ++CP
Sbjct: 88  EMMERGLVVCAICREELAAN------------ERLSELPCRHYYHKECISNWLSNRNTCP 138

[Close]
BLAST of Cp4.1LG19g00790 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-08
Identity = 25/61 (40.98%), Postives = 31/61 (50.82%), Query Frame = 1 

Query: 390 EMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAP 449
           E   CSICLE L           G K  +V RM C HV+H  C+  WL   ++CPLCR  
Sbjct: 153 ETEPCSICLESLVS---------GPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTE 204

Query: 450 L 451
           +
Sbjct: 213 I 204

[Close]
BLAST of Cp4.1LG19g00790 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-07
Identity = 26/81 (32.10%), Postives = 39/81 (48.15%), Query Frame = 1 

Query: 370 ETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYH 429
           +  +LE+       V+ +   + +CS+CL E   +  G            +  +CGHV+H
Sbjct: 89  DPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR-----------VLPKCGHVFH 148

Query: 430 ESCIFNWLHHNSSCPLCRAPL 451
             CI  W    SSCPLCRAP+
Sbjct: 149 VDCIDTWFRSRSSCPLCRAPV 158

[Close]
BLAST of Cp4.1LG19g00790 vs. TAIR10
Match: AT1G15100.1 (AT1G15100.1 RING-H2 finger A2A)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-07
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 1 

Query: 386 ENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHH-NSSCP 445
           + G    DC +CL +L            K+ EEV +++C HV+H+ C+  WLH  N +CP
Sbjct: 78  DGGGGGSDCVVCLSKL------------KEGEEVRKLECRHVFHKKCLEGWLHQFNFTCP 131

Query: 446 LCRAPL 451
           LCR+ L
Sbjct: 138 LCRSAL 131

[Close]
BLAST of Cp4.1LG19g00790 vs. NCBI nr
Match: gi|449454422|ref|XP_004144954.1| (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 99/238 (41.60%), Postives = 138/238 (57.98%), Query Frame = 1 

Query: 226 PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPILLRNLLFP 285
           PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I   N LF 
Sbjct: 8   PIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFY 67

Query: 286 LRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELD 345
           L L++L +P+F   Y+ Q+LS LN+R    + +A RI S+ + +   N ET+FH + E+D
Sbjct: 68  LSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 127

Query: 346 YIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTE-----------KVEENGEEMG 405
           +IRLI W     G         A  EET +L+EA P  +           + EE  EE+G
Sbjct: 128 FIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELG 187

Query: 406 DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           DCSICL+EL+            ++ EV+R+ CGHVYHESCIF WL +++SCPLCR PL
Sbjct: 188 DCSICLDELS-----------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]
BLAST of Cp4.1LG19g00790 vs. NCBI nr
Match: gi|778730084|ref|XP_011659694.1| (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 99/238 (41.60%), Postives = 138/238 (57.98%), Query Frame = 1 

Query: 226 PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPILLRNLLFP 285
           PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I   N LF 
Sbjct: 8   PIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFY 67

Query: 286 LRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELD 345
           L L++L +P+F   Y+ Q+LS LN+R    + +A RI S+ + +   N ET+FH + E+D
Sbjct: 68  LSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 127

Query: 346 YIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTE-----------KVEENGEEMG 405
           +IRLI W     G         A  EET +L+EA P  +           + EE  EE+G
Sbjct: 128 FIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELG 187

Query: 406 DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           DCSICL+EL+            ++ EV+R+ CGHVYHESCIF WL +++SCPLCR PL
Sbjct: 188 DCSICLDELS-----------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]
BLAST of Cp4.1LG19g00790 vs. NCBI nr
Match: gi|778697402|ref|XP_011654314.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-24
Identity = 78/209 (37.32%), Postives = 114/209 (54.55%), Query Frame = 1 

Query: 21  VLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFLQVYVAQLLSL 80
           VL++QL Y  R ISVS  S    L ET P    N LF L + +L +P+F   ++ Q L  
Sbjct: 22  VLEVQLSYLERAISVSSFSQ-RILYETQPTPFNNALFYLSVHQLQHPLF---HIRQFLYS 81

Query: 81  LNVRSPVREVIAERIVSYTILIAGGNR--ETSFHTVLELDYIRLITWTEENHGLYQGWSN 140
           LN+R   RE IA +I S+   +  GN    ++F+ +  +D +R+I   E+     +GW  
Sbjct: 82  LNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRA--EGWRG 141

Query: 141 DNALGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQ 200
                   A+   ++  +E      EE GDCS+CL+EL+            ++ EVIR+ 
Sbjct: 142 -------VAVERLSKLKSE------EEKGDCSVCLDELDC-----------EKREVIRIP 197

Query: 201 CGHVYHESCIFNWLHHNSSCPLCRAPLPI 228
           CGHVYHESCIF WL+ ++SCPLCR+  P+
Sbjct: 202 CGHVYHESCIFKWLNSSNSCPLCRSSFPL 197

[Close]
BLAST of Cp4.1LG19g00790 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 75/224 (33.48%), Postives = 122/224 (54.46%), Query Frame = 1 

Query: 236 SAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFL 295
           SAA+  QP Q ++L+L +F  ++ +SP   +  LQ+T+PIL+ + L    L+EL +P F+
Sbjct: 20  SAATNGQPLQFVELRLGHFS-QLVLSPSHQI--LQQTSPILISDTLIRFPLRELEDPPFI 79

Query: 296 -QVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELDYIRLITWTEEN 355
               + + LS  N+   V + I  +I S+   +  GN  ++FH +  LD++         
Sbjct: 80  SHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV--------- 139

Query: 356 HGLYQGWSNDNALGEETAILEEA------RPVTEKVEEN-GEEMGD-CSICLEELNGNGN 415
              Y  W + +   +  A+ + A      R + EK + N GEEM D CS+C E+L     
Sbjct: 140 ---YTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDL----- 199

Query: 416 GNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
              +G+ +K +EV R+ CGH++H+SCI  WL  ++SCPLCR  L
Sbjct: 200 ---HGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGEL 220

[Close]
BLAST of Cp4.1LG19g00790 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 8.3e-20
Identity = 76/232 (32.76%), Postives = 122/232 (52.59%), Query Frame = 1 

Query: 233 GYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNP 292
           G +S A+  QP Q +QL+LR+F + +  +P   +  LQ+T+P L+ + L P  L EL +P
Sbjct: 17  GKSSLATDGQPLQFVQLRLRHFGQLVH-TPSQQI--LQQTSPTLISDTLIPFSLWELEDP 76

Query: 293 VFLQVY-VAQLLSLLNVRSPVREVIAERIVSYT---ILIAGGNRETSFHTVLELDYIRLI 352
            F+  + + + LS  ++ + V + I   I S+    +L A  N   +FH + ++D +   
Sbjct: 77  PFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVDIV--- 136

Query: 353 TWTEENHGLYQGWSNDNALGEETAILEEA------RPVTEKVEENG--EEMGD--CSICL 412
                    Y  W + +   +  A+ + A      R + EK + NG  E+ GD  CS+C 
Sbjct: 137 ---------YTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCY 196

Query: 413 EELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           E+L G        E +K +EV R+ CGH+YH+SCI  WL  ++SCPLCR  L
Sbjct: 197 EQLYGKREN----ENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRREL 229

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g00790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL5_ARATH2.3e-0632.10RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1[more]
RHA2A_ARATH4.0e-0637.88E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1[more]
ATL64_ARATH6.8e-0632.89RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1[more]
BLAST of Cp4.1LG19g00790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2W2_CUCSA2.6e-3641.60Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
A0A0A0K696_CUCSA2.6e-3641.60Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
A0A0A0KYC0_CUCSA1.3e-2437.32Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1[more]
A0A0A0LRB0_CUCSA8.1e-2233.48Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA5.8e-2032.76Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
BLAST of Cp4.1LG19g00790 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G12190.11.2e-0838.57 RING/U-box superfamily protein[more]
AT3G30460.12.0e-0831.71 RING/U-box superfamily protein[more]
AT4G05350.13.5e-0840.98 RING/U-box superfamily protein[more]
AT3G62690.11.3e-0732.10 AtL5[more]
AT1G15100.12.3e-0737.88 RING-H2 finger A2A[more]
BLAST of Cp4.1LG19g00790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454422|ref|XP_004144954.1|3.7e-3641.60PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus][more]
gi|778730084|ref|XP_011659694.1|3.7e-3641.60PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus][more]
gi|778697402|ref|XP_011654314.1|1.9e-2437.32PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus][more]
gi|778674460|ref|XP_011650219.1|1.2e-2133.48PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|8.3e-2032.76hypothetical protein Csa_4G551140 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR024766Znf_RING_H2
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g00790.1Cp4.1LG19g00790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 394..446
score: 3.2E-9coord: 169..221
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 394..447
score: 12.652coord: 169..222
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 157..226
score: 4.0E-18coord: 382..449
score: 1.3
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 168..222
score: 2.0E-10coord: 393..447
score: 2.0
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 155..256
score: 1.2E-14coord: 368..417
score: 1.2E-14coord: 16..45
score: 1.2
NoneNo IPR availablePANTHERPTHR22763:SF3E3 UBIQUITIN-PROTEIN LIGASE RNF115coord: 155..256
score: 1.2E-14coord: 16..45
score: 1.2E-14coord: 368..417
score: 1.2
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 393..450
score: 9.28E-19coord: 168..231
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG19g00790CmaCh07G013020Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g00790CmoCh03G000880Cucurbita moschata (Rifu)cmocpeB620
Cp4.1LG19g00790CmoCh07G013470Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g00790Lsi01G019150Bottle gourd (USVL1VR-Ls)cpelsiB392
Cp4.1LG19g00790MELO3C009075.2Melon (DHL92) v3.6.1cpemedB534
Cp4.1LG19g00790Bhi03G002247Wax gourdcpewgoB0616
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG19g00790Cp4.1LG10g11760Cucurbita pepo (Zucchini)cpecpeB085
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g00790Cucumber (Chinese Long) v3cpecucB0613
Cp4.1LG19g00790Wax gourdcpewgoB0601
Cp4.1LG19g00790Cucurbita maxima (Rimu)cmacpeB669
Cp4.1LG19g00790Wild cucumber (PI 183967)cpecpiB500
Cp4.1LG19g00790Cucumber (Chinese Long) v2cpecuB498
Cp4.1LG19g00790Watermelon (Charleston Gray)cpewcgB434
Cp4.1LG19g00790Watermelon (97103) v1cpewmB489
Cp4.1LG19g00790Watermelon (97103) v1cpewmB490
Cp4.1LG19g00790Watermelon (97103) v1cpewmB493
Cp4.1LG19g00790Melon (DHL92) v3.5.1cpemeB451
Cp4.1LG19g00790Cucumber (Gy14) v2cgybcpeB534
Cp4.1LG19g00790Silver-seed gourdcarcpeB0277
Cp4.1LG19g00790Silver-seed gourdcarcpeB0400