Cp4.1LG10g11760 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g11760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING/U-box superfamily protein
LocationCp4.1LG10 : 8570615 .. 8572081 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCCTGGAAGAACAATTAGAATTGTAATTAGAATTGACACAAAAACACATCTAATTGATGAAAAATTAGCCGCAGATTATACTGTATCGGTATCACCAGTGCACCTACGACTTTAAATTGTTAAGTTAGGATTAGATTAATCACTTAATCTATTCCCAACCGAACAGCTTAGCCCACTGGCGATAACTCGATTGGCAACGTTCGATCGACTAGAAGTATCTAGCGAAGGTTGAATCCCACTTCTGAACTAGTACGGTTTTCCACAAAATAAAGACAAGGGGGAGGAAGCTAATCAGCTATATCTTTACCATTTATTCCTTCCTCCTTTTCAACCAGGCCTTTCGATTTCATAATTTCAGGACGTGATAAGCATATACGATTCATCTTACATCTCAAGCAAATTAATAACAGTATGTAGCAAAAATATGTAGAAAAACACACCAGAATAATGAATCACATTGATATAACAAATAGTATTGGGCTCAAGGTTACACCAATCACAATGACCATATTACCATAATATTTCCCAAAAGAAGTTTCAACAGTGACATTTGAAAGAACAATCTGTTGAGTTTGTTCCCATAGAAAGATCAGTTAAAAGGCGATATCAAAATCAAGACTTGTGTGTACGGTTAACAAACCCAATTTGGGTTCATAGTGTGACGACCCAAAGGTGATATCAAAATCACGTGATTGTGTGCGGTTAACGAACCCAATTCGGGTTCATAGTGTGGAGCTTACACATTTGATATGAGTAGCTAAAGAATACCAAATAATACATTCAATATGGCAGAAAACTTTTACATAACAGACAACGAACACATTTTATATCAGATCATACTTTCATATATGCATGTTTTTCTCAGTTCGGTCAGACAGCTAAAGGATTTTAATGTCTGTTAACTATATCATTGAATGAACAAAGCAAATTCCCATTAGAAATTATATATGAATTCAAATAACTTTGCAATACCTCACCTCTTCAAGCTGTTGTCGTCGATGTTTAAGAGTCTCTTCATTGGCTTCCTTGTGAATAGAGTGAAGAATGTGCAGCAAATGAGAATCAAAACTCTCTGTACAATGCTNCCGGAAACAGAGAGACGAGCTTCCACATCGTCGTGGAGGTGGATTTCATCCAAAACATCTGGATGGGTCAGGCAGCCGGAGTGTACCAGGGGCAGGGAAACGGCGGCGGACTGGTGGAGGAGACTCTTGTTGTGGATGAGTGGCCGGCGAGGAGGAGGCATCGTCGTGGAGTGGTGGCGCGTGTTGAAGTGGAGGAAGAGAAGGAATTATTGGGAGATTGCTGTATCTGTTTGGATGAGATGAATAAGAAGAGGGAGGTGATAAGAACTCCCTGCGGGCATGTGTATCATGAATCATGCATCTTCCAGTGGCTCAACCTCCATAACTCTTGCCCTCTCTGTAAGAGGCCACTGCCATTGGAGGACAACTCAACCTGA

mRNA sequence

ATGATGCCTGGAAGAACAATTAGAATTGTAATTAGAATTGACACAAAAACACATCTAATTGATGAAAAATTAGCCGCAGATTATACTGTATCGAGTGAAGAATGTGCAGCAAATGAGAATCAAAACTCTCTGTACAATGCTNCCGGAAACAGAGAGACGAGCTTCCACATCGTCGTGGAGGTGGATTTCATCCAAAACATCTGGATGGGTCAGGCAGCCGGAGTGTACCAGGGGCAGGGAAACGGCGGCGGACTGGTGGAGGAGACTCTTGTTGTGGATGAGTGGCCGGCGAGGAGGAGGCATCGTCGTGGAGTGGTGGCGCGTGTTGAAGTGGAGGAAGAGAAGGAATTATTGGGAGATTGCTGTATCTGTTTGGATGAGATGAATAAGAAGAGGGAGGTGATAAGAACTCCCTGCGGGCATGTGTATCATGAATCATGCATCTTCCAGTGGCTCAACCTCCATAACTCTTGCCCTCTCTGTAAGAGGCCACTGCCATTGGAGGACAACTCAACCTGA

Coding sequence (CDS)

ATGATGCCTGGAAGAACAATTAGAATTGTAATTAGAATTGACACAAAAACACATCTAATTGATGAAAAATTAGCCGCAGATTATACTGTATCGAGTGAAGAATGTGCAGCAAATGAGAATCAAAACTCTCTGTACAATGCTNCCGGAAACAGAGAGACGAGCTTCCACATCGTCGTGGAGGTGGATTTCATCCAAAACATCTGGATGGGTCAGGCAGCCGGAGTGTACCAGGGGCAGGGAAACGGCGGCGGACTGGTGGAGGAGACTCTTGTTGTGGATGAGTGGCCGGCGAGGAGGAGGCATCGTCGTGGAGTGGTGGCGCGTGTTGAAGTGGAGGAAGAGAAGGAATTATTGGGAGATTGCTGTATCTGTTTGGATGAGATGAATAAGAAGAGGGAGGTGATAAGAACTCCCTGCGGGCATGTGTATCATGAATCATGCATCTTCCAGTGGCTCAACCTCCATAACTCTTGCCCTCTCTGTAAGAGGCCACTGCCATTGGAGGACAACTCAACCTGA

Protein sequence

MMPGRTIRIVIRIDTKTHLIDEKLAADYTVSSEECAANENQNSLYNAXGNRETSFHIVVEVDFIQNIWMGQAAGVYQGQGNGGGLVEETLVVDEWPARRRHRRGVVARVEVEEEKELLGDCCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLEDNST
Homology
[Close]
BLAST of Cp4.1LG10g11760 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-11
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1 

Query: 115 KELLGDCCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLED 170
           K  +  C +C+DE     +V + PC HV+H+ C+  WL LHNSCP+C+  LP +D
Sbjct: 210 KSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDD 264

[Close]
BLAST of Cp4.1LG10g11760 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.0e-11
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1 

Query: 121 CCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLED 170
           C +C+D+  +  E  + PC H+YH+ C+  WL LHNSCP+C+  LP +D
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDD 272

[Close]
BLAST of Cp4.1LG10g11760 vs. Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.6e-10
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1 

Query: 121 CCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLEDNS 172
           C +CL E  ++  VI  PC H++H +CI  WL+  NSCPLC+  LP +D+S
Sbjct: 88  CPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDS 138

[Close]
BLAST of Cp4.1LG10g11760 vs. Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1 

Query: 121 CCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLEDNS 172
           C +CL E   +  VI  PC H++H +CI  WL+  NSCPLC+  LP +D+S
Sbjct: 88  CPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDS 138

[Close]
BLAST of Cp4.1LG10g11760 vs. Swiss-Prot
Match: RN115_HUMAN (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-09
Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 109 VEVEEEKELLG-DCCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPL 168
           V V +E+  +G +C +C ++   + EV + PC H +H SCI  WL LH++CP+C++ L  
Sbjct: 215 VTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNG 274

Query: 169 EDNS 172
           ED++
Sbjct: 275 EDST 278

[Close]
BLAST of Cp4.1LG10g11760 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.9e-29
Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 1 

Query: 50  NRETSFHIVVEVDFIQNIWMGQAAGVYQGQGNGGGLVEETLVVDEWPARRRHRRGVVA-- 109
           N ET+FHI+ EVDFI+ IW+          G GG   EET+V+DE P   +   GV    
Sbjct: 107 NSETNFHILAEVDFIRLIWL-------PSMGGGGAGAEETVVLDEAPPAVKRGVGVARGE 166

Query: 110 RVEVEEEKELLGDCCICLDEMN-KKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLP 169
           R+  EE+ E LGDC ICLDE++ +KREV+R PCGHVYHESCIF+WL  HNSCPLC++PL 
Sbjct: 167 RLRSEEKMEELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPLH 222

[Close]
BLAST of Cp4.1LG10g11760 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.9e-29
Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1 

Query: 50  NRETSFHIVVEVDFIQNIWMGQAAGVYQGQGNGGGLVEETLVVDEWPARRRHRRGVVA-- 109
           N ET+FHI+ EVDFI+ IW+          G GG   EET+V+DE P   +   GV    
Sbjct: 107 NSETNFHILAEVDFIRLIWL-------PSMGGGGAGAEETVVLDEAPPAVKRGVGVARGE 166

Query: 110 RVEVEEEKELLGDCCICLDEMN-KKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLP 169
           R+  EE+ E LGDC ICLDE++ +KREV+R PCGHVYHESCIF+WL  HNSCPLC++PL 
Sbjct: 167 RLRSEEKMEELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPLH 223

Query: 170 LEDN 171
            +D+
Sbjct: 227 HDDD 223

[Close]
BLAST of Cp4.1LG10g11760 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 92  VDEWPARRRHRRGVVARVEVEEEKELLGDCCICLDEMN-KKREVIRTPCGHVYHESCIFQ 151
           ++E P     R   V R+   + +E  GDC +CLDE++ +KREVIR PCGHVYHESCIF+
Sbjct: 121 IEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK 180

Query: 152 WLNLHNSCPLCKRPLPLED 170
           WLN  NSCPLC+   PL +
Sbjct: 181 WLNSSNSCPLCRSSFPLHN 199

[Close]
BLAST of Cp4.1LG10g11760 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 1 

Query: 55  FHIVVEVDFIQNIWMGQAAGVYQGQGNGGGLVEETLVVDEWPARRRHRRGVVARVEVE-- 114
           F I   VD+I+  W   A  +Y            + V +E    R      + RV+ +  
Sbjct: 114 FKIETNVDYIKEYWTEAAPELYP----------ISTVGEEGLPPRGASESAIERVKKQKF 173

Query: 115 -----EEKELLGDCCICLDEMNKKR-EVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPL 166
                EE+E +GDC +C +E+ +K  EV R PCGHVYH+SCI +WL + NSCPLC+  L
Sbjct: 174 DGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAAL 222

[Close]
BLAST of Cp4.1LG10g11760 vs. TrEMBL
Match: A0A0A0LW68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573640 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.9e-12
Identity = 50/138 (36.23%), Postives = 69/138 (50.00%), Query Frame = 1 

Query: 29  TVSSEECAANENQNSLYNAXGNRETSFHIVVEVDFIQNIWMGQAA-GVYQGQGNGGGLVE 88
           +++SE  A N    +   A  N   SFHI V +DFI   WM   +    Q  GN   +VE
Sbjct: 92  SIASEAMARNIFLIANQVANENSNASFHIAVIIDFINFTWMCPLSFSTRQLTGNEVSMVE 151

Query: 89  ETLVVDEWPARRRHRRGVVARVEVEEEKELLGDCCICLDEMN-KKREVI-RTPCGHVYHE 148
           +  + ++                       LGDC ICLDE++   REV+ +  CGHVYHE
Sbjct: 152 QKKIGND-----------------------LGDCSICLDELSPSNREVVLKISCGHVYHE 206

Query: 149 SCIFQWLNLHNSCPLCKR 164
            CI +WL+  +SCPLC+R
Sbjct: 212 LCILRWLDNSDSCPLCRR 206

[Close]
BLAST of Cp4.1LG10g11760 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1 

Query: 115 KELLGDCCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLED 170
           K  +  C +C+DE     +V + PC HV+H+ C+  WL LHNSCP+C+  LP +D
Sbjct: 210 KSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDD 264

[Close]
BLAST of Cp4.1LG10g11760 vs. TAIR10
Match: AT3G02340.1 (AT3G02340.1 RING/U-box superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1 

Query: 106 VARVEVEEEKELLGDCCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPL 165
           V  + VEE  +    C +C DEM  + +V R PC H YH  CI  WL + N+CP+C+  L
Sbjct: 320 VVELAVEELDKGNNVCAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYEL 379

Query: 166 PLED 170
           P +D
Sbjct: 380 PTDD 383

[Close]
BLAST of Cp4.1LG10g11760 vs. TAIR10
Match: AT5G08139.1 (AT5G08139.1 RING/U-box superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-11
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1 

Query: 121 CCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLED 170
           C +C DEMN   + ++ PC H YH  CI  WL + N+CP+C+  LP +D
Sbjct: 309 CAVCKDEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCRYELPTDD 357

[Close]
BLAST of Cp4.1LG10g11760 vs. TAIR10
Match: AT5G15820.1 (AT5G15820.1 RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 1 

Query: 111 VEEEKELLGDCCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLED 170
           +EE   +   C IC DE+  K +V R PC H YH  CI  WL + N+CP+C+  LP +D
Sbjct: 281 IEELSSVSIVCAICKDEVVFKEKVKRLPCKHYYHGECIIPWLGIRNTCPVCRHELPTDD 339

[Close]
BLAST of Cp4.1LG10g11760 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1 

Query: 121 CCICLDEMNKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLPLEDNST 173
           C +C DE   K E  + PC H+YH  CI  WL  HNSCP+C++ LP   +S+
Sbjct: 186 CPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSRGSSS 237

[Close]
BLAST of Cp4.1LG10g11760 vs. NCBI nr
Match: gi|449454422|ref|XP_004144954.1| (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 1 

Query: 50  NRETSFHIVVEVDFIQNIWMGQAAGVYQGQGNGGGLVEETLVVDEWPARRRHRRGVVA-- 109
           N ET+FHI+ EVDFI+ IW+          G GG   EET+V+DE P   +   GV    
Sbjct: 107 NSETNFHILAEVDFIRLIWL-------PSMGGGGAGAEETVVLDEAPPAVKRGVGVARGE 166

Query: 110 RVEVEEEKELLGDCCICLDEMN-KKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLP 169
           R+  EE+ E LGDC ICLDE++ +KREV+R PCGHVYHESCIF+WL  HNSCPLC++PL 
Sbjct: 167 RLRSEEKMEELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPLH 222

[Close]
BLAST of Cp4.1LG10g11760 vs. NCBI nr
Match: gi|778730084|ref|XP_011659694.1| (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1 

Query: 50  NRETSFHIVVEVDFIQNIWMGQAAGVYQGQGNGGGLVEETLVVDEWPARRRHRRGVVA-- 109
           N ET+FHI+ EVDFI+ IW+          G GG   EET+V+DE P   +   GV    
Sbjct: 107 NSETNFHILAEVDFIRLIWL-------PSMGGGGAGAEETVVLDEAPPAVKRGVGVARGE 166

Query: 110 RVEVEEEKELLGDCCICLDEMN-KKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPLP 169
           R+  EE+ E LGDC ICLDE++ +KREV+R PCGHVYHESCIF+WL  HNSCPLC++PL 
Sbjct: 167 RLRSEEKMEELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPLH 223

Query: 170 LEDN 171
            +D+
Sbjct: 227 HDDD 223

[Close]
BLAST of Cp4.1LG10g11760 vs. NCBI nr
Match: gi|778697402|ref|XP_011654314.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 3.6e-16
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1 

Query: 92  VDEWPARRRHRRGVVARVEVEEEKELLGDCCICLDEMN-KKREVIRTPCGHVYHESCIFQ 151
           ++E P     R   V R+   + +E  GDC +CLDE++ +KREVIR PCGHVYHESCIF+
Sbjct: 121 IEEQPRAEGWRGVAVERLSKLKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK 180

Query: 152 WLNLHNSCPLCKRPLPLED 170
           WLN  NSCPLC+   PL +
Sbjct: 181 WLNSSNSCPLCRSSFPLHN 199

[Close]
BLAST of Cp4.1LG10g11760 vs. NCBI nr
Match: gi|659114890|ref|XP_008457277.1| (PREDICTED: RING finger protein 165-like [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 112 EEEKELLGDCCICLDEMNKK-REVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPL 166
           EEE+E +GDCC+C +EM +K  EV R PCGHVYH+SCI +WL + NSCPLC+  L
Sbjct: 168 EEEEEEIGDCCVCCEEMKRKGEEVRRIPCGHVYHKSCILKWLEISNSCPLCRAAL 222

[Close]
BLAST of Cp4.1LG10g11760 vs. NCBI nr
Match: gi|659100547|ref|XP_008451147.1| (PREDICTED: E3 ubiquitin-protein ligase ATL59-like [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 51/137 (37.23%), Postives = 69/137 (50.36%), Query Frame = 1 

Query: 29  TVSSEECAANENQNSLYNAXGNRETSFHIVVEVDFIQNIWMGQAAGVYQGQGNGGGLVEE 88
           +V+SE  A      + + A  N   SFHIVV VDFIQ  WM   + + Q           
Sbjct: 93  SVNSEVIAREIVLIANHVAKENSNASFHIVVTVDFIQFTWMHSLSLLTQ----------- 152

Query: 89  TLVVDEWPARRRHRRGVVARVEVEEEKELLGDCCICLDEM--NKKREVIRTPCGHVYHES 148
                      +  R  V  V  +E ++ L DC ICL+E   N ++  ++ PCGHVYHES
Sbjct: 153 -----------QSTRNEVRMVGWKEIEKDLDDCSICLEEFSCNNRKIGLKIPCGHVYHES 207

Query: 149 CIFQWLNLHNSCPLCKR 164
           CI +WL   +SCPLC+R
Sbjct: 213 CILKWLENSHSCPLCRR 207

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g11760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNG1L_ARATH2.7e-1143.64E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RING1_GOSHI6.0e-1144.90E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RN181_RAT6.6e-1047.06E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1[more]
RN181_MOUSE1.1e-0947.06E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1[more]
RN115_HUMAN3.3e-0939.06E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2[more]
BLAST of Cp4.1LG10g11760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2W2_CUCSA9.9e-2954.47Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
A0A0A0K696_CUCSA9.9e-2954.03Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
A0A0A0KYC0_CUCSA2.5e-1653.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1[more]
A0A0A0LHS2_CUCSA1.7e-1236.97Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1[more]
A0A0A0LW68_CUCSA4.9e-1236.23Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573640 PE=4 SV=1[more]
BLAST of Cp4.1LG10g11760 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.11.5e-1243.64 RING/U-box superfamily protein[more]
AT3G02340.12.2e-1142.19 RING/U-box superfamily protein[more]
AT5G08139.12.9e-1144.90 RING/U-box superfamily protein[more]
AT5G15820.13.7e-1144.07 RING/U-box superfamily protein[more]
AT3G56580.23.7e-1146.15 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG10g11760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454422|ref|XP_004144954.1|1.4e-2854.47PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus][more]
gi|778730084|ref|XP_011659694.1|1.4e-2854.03PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus][more]
gi|778697402|ref|XP_011654314.1|3.6e-1653.16PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus][more]
gi|659114890|ref|XP_008457277.1|1.7e-1361.82PREDICTED: RING finger protein 165-like [Cucumis melo][more]
gi|659100547|ref|XP_008451147.1|1.1e-1237.23PREDICTED: E3 ubiquitin-protein ligase ATL59-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g11760.1Cp4.1LG10g11760.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 120..162
score: 2.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 121..161
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 121..162
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 120..165
score: 6.6
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 85..169
score: 1.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 109..167
score: 5.74

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g11760ClCG04G000540Watermelon (Charleston Gray)cpewcgB079
Cp4.1LG10g11760MELO3C009075.2Melon (DHL92) v3.6.1cpemedB094
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g11760Cp4.1LG19g00790Cucurbita pepo (Zucchini)cpecpeB085
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g11760Cucurbita pepo (Zucchini)cpecpeB079
Cp4.1LG10g11760Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g11760Cucurbita maxima (Rimu)cmacpeB863
Cp4.1LG10g11760Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g11760Cucurbita moschata (Rifu)cmocpeB803
Cp4.1LG10g11760Wild cucumber (PI 183967)cpecpiB066
Cp4.1LG10g11760Cucumber (Chinese Long) v2cpecuB071
Cp4.1LG10g11760Bottle gourd (USVL1VR-Ls)cpelsiB055
Cp4.1LG10g11760Watermelon (97103) v1cpewmB080
Cp4.1LG10g11760Melon (DHL92) v3.5.1cpemeB072
Cp4.1LG10g11760Cucumber (Gy14) v2cgybcpeB464
Cp4.1LG10g11760Silver-seed gourdcarcpeB0276
Cp4.1LG10g11760Silver-seed gourdcarcpeB0398
Cp4.1LG10g11760Cucumber (Chinese Long) v3cpecucB0076
Cp4.1LG10g11760Wax gourdcpewgoB0104