Cp4.1LG19g00790.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG19g00790.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RING/U-box superfamily protein
Location	Cp4.1LG19 : 543816 .. 546121 (-)
Sequence length	1350

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTGTGAAATTCTTCATTTCTTGTGGGTCTCATTTTAATTACTCATTTTTTGAGGGGCTCATTTGCAATTACTCATTTCTTGTGGGTCTCATTTTAATTACTCATTTTTTGAGGGTCTCATTTGCAATTACTCTGCTTACACGTGTATGCCCCCACTGCTACTTGTAGCATCATTAACAATAATAACACTAATTCTTTTTGTTGGAAATATTCTTTTTCATTTTTTTTATTTTAAAAATTGAATTTATAAATTCTACTTCTTATAAAAATATTTAATTTGTTATTTTCTTTTTATCAATATTTTAAAACTTAAATTATTAGTTTTTTTTTTTTATTTAACTAAAAGTTTAATTATTTCTTTAAAATATTATAATTATTGTAATATAATTGTGAAAAGAAATACAAATTTTCAAAAAGGAGGTGAAGCAGAAAAATCAAACAATTAATCCTCTAATTATTATTTTTAAAGAAAAAAAATATATCCTTTTTAGGGACCTAGCAAATAGCATTTGAAAAATCAAAACAACATGTCGATTTCAAATATCGATATCAATCATCCTTCGGGCTTCATTGTCGGTGGCCTACCTCGAGCTCGTTCTCAAATCTAACGTATTTGCGGTGGAAAAATTCCCATTCTACCCCTACTTCATGACTTTTTTTTCTTTTTCTTTTTTCACCATCAAAATTTAGATTAATTATTTTTAAGTTAGCTTTTGAAAATAGGTTAGACTTACCATTTAATTTTCAACCAATTACTTACCAACTTCAATTTGATTTCGATGTTTTTAAACGTTTTAAATTAGTCTATATTAGTTGAGTTTAATTTCAATTTAGTCGAGATGATTTGGATTTAATTATGTTATAAAGTTTGGGTTANAACAATCAACAATCAACAATCAAAAACTCACTTACCAATCAGTACCAAACTCGATCCTCAGAATGTCTTTTGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTG

mRNA sequence

CCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTG

Coding sequence (CDS)

CCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATAATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCATCCTAATAGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGACTGATCACCTGGACGGAAGAAAACCACGGATTGTACCAGGGATGGAGCAATGACAATGCACTGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTGACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAATGGGAATGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTG

Protein sequence

PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELDYIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPLPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELDYIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL

Homology

[Close]

BLAST of Cp4.1LG19g00790.1 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-06
Identity = 26/81 (32.10%), Postives = 39/81 (48.15%), Query Frame = 1


Query: 370 ETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYH 429
           +  +LE+       V+ +   + +CS+CL E   +  G            +  +CGHV+H
Sbjct: 89  DPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR-----------VLPKCGHVFH 148

Query: 430 ESCIFNWLHHNSSCPLCRAPL 451
             CI  W    SSCPLCRAP+
Sbjct: 149 VDCIDTWFRSRSSCPLCRAPV 158

[Close]

BLAST of Cp4.1LG19g00790.1 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.0e-06
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 1


Query: 386 ENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHH-NSSCP 445
           + G    DC +CL +L            K+ EEV +++C HV+H+ C+  WLH  N +CP
Sbjct: 78  DGGGGGSDCVVCLSKL------------KEGEEVRKLECRHVFHKKCLEGWLHQFNFTCP 131

Query: 446 LCRAPL 451
           LCR+ L
Sbjct: 138 LCRSAL 131

[Close]

BLAST of Cp4.1LG19g00790.1 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-06
Identity = 25/76 (32.89%), Postives = 37/76 (48.68%), Query Frame = 1


Query: 164 EEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRA 223
           EE  +CS+CL E      G            +  +CGH +H  CI  W    S+CPLCRA
Sbjct: 103 EEKEECSVCLSEFEEEDEGR-----------LLPKCGHSFHVDCIDTWFRSRSTCPLCRA 162

Query: 224 PLPIQYRIYGYTSAAS 240
           P+   +++    S++S
Sbjct: 163 PVQPPFQVIETGSSSS 167

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36
Identity = 99/238 (41.60%), Postives = 138/238 (57.98%), Query Frame = 1


Query: 226 PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPILLRNLLFP 285
           PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I   N LF 
Sbjct: 8   PIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFY 67

Query: 286 LRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELD 345
           L L++L +P+F   Y+ Q+LS LN+R    + +A RI S+ + +   N ET+FH + E+D
Sbjct: 68  LSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 127

Query: 346 YIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTE-----------KVEENGEEMG 405
           +IRLI W     G         A  EET +L+EA P  +           + EE  EE+G
Sbjct: 128 FIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELG 187

Query: 406 DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           DCSICL+EL+            ++ EV+R+ CGHVYHESCIF WL +++SCPLCR PL
Sbjct: 188 DCSICLDELS-----------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36
Identity = 99/238 (41.60%), Postives = 138/238 (57.98%), Query Frame = 1


Query: 226 PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPILLRNLLFP 285
           PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I   N LF 
Sbjct: 8   PIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFY 67

Query: 286 LRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELD 345
           L L++L +P+F   Y+ Q+LS LN+R    + +A RI S+ + +   N ET+FH + E+D
Sbjct: 68  LSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 127

Query: 346 YIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTE-----------KVEENGEEMG 405
           +IRLI W     G         A  EET +L+EA P  +           + EE  EE+G
Sbjct: 128 FIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELG 187

Query: 406 DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           DCSICL+EL+            ++ EV+R+ CGHVYHESCIF WL +++SCPLCR PL
Sbjct: 188 DCSICLDELS-----------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24
Identity = 78/209 (37.32%), Postives = 114/209 (54.55%), Query Frame = 1


Query: 21  VLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFLQVYVAQLLSL 80
           VL++QL Y  R ISVS  S    L ET P    N LF L + +L +P+F   ++ Q L  
Sbjct: 22  VLEVQLSYLERAISVSSFSQ-RILYETQPTPFNNALFYLSVHQLQHPLF---HIRQFLYS 81

Query: 81  LNVRSPVREVIAERIVSYTILIAGGNR--ETSFHTVLELDYIRLITWTEENHGLYQGWSN 140
           LN+R   RE IA +I S+   +  GN    ++F+ +  +D +R+I   E+     +GW  
Sbjct: 82  LNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRA--EGWRG 141

Query: 141 DNALGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQ 200
                   A+   ++  +E      EE GDCS+CL+EL+            ++ EVIR+ 
Sbjct: 142 -------VAVERLSKLKSE------EEKGDCSVCLDELDC-----------EKREVIRIP 197

Query: 201 CGHVYHESCIFNWLHHNSSCPLCRAPLPI 228
           CGHVYHESCIF WL+ ++SCPLCR+  P+
Sbjct: 202 CGHVYHESCIFKWLNSSNSCPLCRSSFPL 197

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.1e-22
Identity = 75/224 (33.48%), Postives = 122/224 (54.46%), Query Frame = 1


Query: 236 SAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFL 295
           SAA+  QP Q ++L+L +F  ++ +SP   +  LQ+T+PIL+ + L    L+EL +P F+
Sbjct: 20  SAATNGQPLQFVELRLGHFS-QLVLSPSHQI--LQQTSPILISDTLIRFPLRELEDPPFI 79

Query: 296 -QVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELDYIRLITWTEEN 355
               + + LS  N+   V + I  +I S+   +  GN  ++FH +  LD++         
Sbjct: 80  SHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV--------- 139

Query: 356 HGLYQGWSNDNALGEETAILEEA------RPVTEKVEEN-GEEMGD-CSICLEELNGNGN 415
              Y  W + +   +  A+ + A      R + EK + N GEEM D CS+C E+L     
Sbjct: 140 ---YTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDL----- 199

Query: 416 GNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
              +G+ +K +EV R+ CGH++H+SCI  WL  ++SCPLCR  L
Sbjct: 200 ---HGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGEL 220

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.8e-20
Identity = 76/232 (32.76%), Postives = 122/232 (52.59%), Query Frame = 1


Query: 233 GYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNP 292
           G +S A+  QP Q +QL+LR+F + +  +P   +  LQ+T+P L+ + L P  L EL +P
Sbjct: 17  GKSSLATDGQPLQFVQLRLRHFGQLVH-TPSQQI--LQQTSPTLISDTLIPFSLWELEDP 76

Query: 293 VFLQVY-VAQLLSLLNVRSPVREVIAERIVSYT---ILIAGGNRETSFHTVLELDYIRLI 352
            F+  + + + LS  ++ + V + I   I S+    +L A  N   +FH + ++D +   
Sbjct: 77  PFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVDIV--- 136

Query: 353 TWTEENHGLYQGWSNDNALGEETAILEEA------RPVTEKVEENG--EEMGD--CSICL 412
                    Y  W + +   +  A+ + A      R + EK + NG  E+ GD  CS+C 
Sbjct: 137 ---------YTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCY 196

Query: 413 EELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           E+L G        E +K +EV R+ CGH+YH+SCI  WL  ++SCPLCR  L
Sbjct: 197 EQLYGKREN----ENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRREL 229

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TAIR10
Match: AT4G12190.1 (AT4G12190.1 RING/U-box superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-08
Identity = 27/70 (38.57%), Postives = 36/70 (51.43%), Query Frame = 1


Query: 381 TEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHN 440
           TE+++    E   CSICLE L           G K  ++ RM C HV+H  C+  WL   
Sbjct: 9   TEELKSLKMETEPCSICLESLVS---------GPKPRDITRMTCSHVFHNGCLLEWLKRK 68

Query: 441 SSCPLCRAPL 451
           ++CPLCR  L
Sbjct: 69  NTCPLCRTEL 69

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TAIR10
Match: AT3G30460.1 (AT3G30460.1 RING/U-box superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-08
Identity = 39/123 (31.71%), Postives = 57/123 (46.34%), Query Frame = 1


Query: 113 TVLELDYIRLITWTEE--NHGLYQGWSNDN----ALGEETAILE-----EARPVTEKVEE 172
           T+++ +Y+R + + +   NHG+    S D      LG  ++        E  PV E   E
Sbjct: 28  TLIDDEYLRYLHYLDSRSNHGVNTFGSYDEIFGLVLGNSSSCTRWLNAGEELPVVEFTAE 87

Query: 173 NGEEMG--DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCP 223
              E G   C+IC EEL  N            E +  + C H YH+ CI NWL + ++CP
Sbjct: 88  EMMERGLVVCAICREELAAN------------ERLSELPCRHYYHKECISNWLSNRNTCP 138

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-08
Identity = 25/61 (40.98%), Postives = 31/61 (50.82%), Query Frame = 1


Query: 390 EMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAP 449
           E   CSICLE L           G K  +V RM C HV+H  C+  WL   ++CPLCR  
Sbjct: 153 ETEPCSICLESLVS---------GPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTE 204

Query: 450 L 451
           +
Sbjct: 213 I 204

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-07
Identity = 26/81 (32.10%), Postives = 39/81 (48.15%), Query Frame = 1


Query: 370 ETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYH 429
           +  +LE+       V+ +   + +CS+CL E   +  G            +  +CGHV+H
Sbjct: 89  DPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR-----------VLPKCGHVFH 148

Query: 430 ESCIFNWLHHNSSCPLCRAPL 451
             CI  W    SSCPLCRAP+
Sbjct: 149 VDCIDTWFRSRSSCPLCRAPV 158

[Close]

BLAST of Cp4.1LG19g00790.1 vs. TAIR10
Match: AT1G15100.1 (AT1G15100.1 RING-H2 finger A2A)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-07
Identity = 25/66 (37.88%), Postives = 37/66 (56.06%), Query Frame = 1


Query: 386 ENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHH-NSSCP 445
           + G    DC +CL +L            K+ EEV +++C HV+H+ C+  WLH  N +CP
Sbjct: 78  DGGGGGSDCVVCLSKL------------KEGEEVRKLECRHVFHKKCLEGWLHQFNFTCP 131

Query: 446 LCRAPL 451
           LCR+ L
Sbjct: 138 LCRSAL 131

[Close]

BLAST of Cp4.1LG19g00790.1 vs. NCBI nr
Match: gi|449454422|ref|XP_004144954.1| (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 99/238 (41.60%), Postives = 138/238 (57.98%), Query Frame = 1


Query: 226 PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPILLRNLLFP 285
           PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I   N LF 
Sbjct: 8   PIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFY 67

Query: 286 LRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELD 345
           L L++L +P+F   Y+ Q+LS LN+R    + +A RI S+ + +   N ET+FH + E+D
Sbjct: 68  LSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 127

Query: 346 YIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTE-----------KVEENGEEMG 405
           +IRLI W     G         A  EET +L+EA P  +           + EE  EE+G
Sbjct: 128 FIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELG 187

Query: 406 DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           DCSICL+EL+            ++ EV+R+ CGHVYHESCIF WL +++SCPLCR PL
Sbjct: 188 DCSICLDELS-----------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of Cp4.1LG19g00790.1 vs. NCBI nr
Match: gi|778730084|ref|XP_011659694.1| (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 99/238 (41.60%), Postives = 138/238 (57.98%), Query Frame = 1


Query: 226 PIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPILLRNLLFP 285
           PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I   N LF 
Sbjct: 8   PIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFY 67

Query: 286 LRLQELHNPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELD 345
           L L++L +P+F   Y+ Q+LS LN+R    + +A RI S+ + +   N ET+FH + E+D
Sbjct: 68  LSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVD 127

Query: 346 YIRLITWTEENHGLYQGWSNDNALGEETAILEEARPVTE-----------KVEENGEEMG 405
           +IRLI W     G         A  EET +L+EA P  +           + EE  EE+G
Sbjct: 128 FIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELG 187

Query: 406 DCSICLEELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           DCSICL+EL+            ++ EV+R+ CGHVYHESCIF WL +++SCPLCR PL
Sbjct: 188 DCSICLDELS-----------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of Cp4.1LG19g00790.1 vs. NCBI nr
Match: gi|778697402|ref|XP_011654314.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-24
Identity = 78/209 (37.32%), Postives = 114/209 (54.55%), Query Frame = 1


Query: 21  VLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFLQVYVAQLLSL 80
           VL++QL Y  R ISVS  S    L ET P    N LF L + +L +P+F   ++ Q L  
Sbjct: 22  VLEVQLSYLERAISVSSFSQ-RILYETQPTPFNNALFYLSVHQLQHPLF---HIRQFLYS 81

Query: 81  LNVRSPVREVIAERIVSYTILIAGGNR--ETSFHTVLELDYIRLITWTEENHGLYQGWSN 140
           LN+R   RE IA +I S+   +  GN    ++F+ +  +D +R+I   E+     +GW  
Sbjct: 82  LNIR---RETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIEEQPRA--EGWRG 141

Query: 141 DNALGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGNGEGKKREEVIRMQ 200
                   A+   ++  +E      EE GDCS+CL+EL+            ++ EVIR+ 
Sbjct: 142 -------VAVERLSKLKSE------EEKGDCSVCLDELDC-----------EKREVIRIP 197

Query: 201 CGHVYHESCIFNWLHHNSSCPLCRAPLPI 228
           CGHVYHESCIF WL+ ++SCPLCR+  P+
Sbjct: 202 CGHVYHESCIFKWLNSSNSCPLCRSSFPL 197

[Close]

BLAST of Cp4.1LG19g00790.1 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 75/224 (33.48%), Postives = 122/224 (54.46%), Query Frame = 1


Query: 236 SAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNPVFL 295
           SAA+  QP Q ++L+L +F  ++ +SP   +  LQ+T+PIL+ + L    L+EL +P F+
Sbjct: 20  SAATNGQPLQFVELRLGHFS-QLVLSPSHQI--LQQTSPILISDTLIRFPLRELEDPPFI 79

Query: 296 -QVYVAQLLSLLNVRSPVREVIAERIVSYTILIAGGNRETSFHTVLELDYIRLITWTEEN 355
               + + LS  N+   V + I  +I S+   +  GN  ++FH +  LD++         
Sbjct: 80  SHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV--------- 139

Query: 356 HGLYQGWSNDNALGEETAILEEA------RPVTEKVEEN-GEEMGD-CSICLEELNGNGN 415
              Y  W + +   +  A+ + A      R + EK + N GEEM D CS+C E+L     
Sbjct: 140 ---YTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDL----- 199

Query: 416 GNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
              +G+ +K +EV R+ CGH++H+SCI  WL  ++SCPLCR  L
Sbjct: 200 ---HGKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGEL 220

[Close]

BLAST of Cp4.1LG19g00790.1 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 8.3e-20
Identity = 76/232 (32.76%), Postives = 122/232 (52.59%), Query Frame = 1


Query: 233 GYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHNP 292
           G +S A+  QP Q +QL+LR+F + +  +P   +  LQ+T+P L+ + L P  L EL +P
Sbjct: 17  GKSSLATDGQPLQFVQLRLRHFGQLVH-TPSQQI--LQQTSPTLISDTLIPFSLWELEDP 76

Query: 293 VFLQVY-VAQLLSLLNVRSPVREVIAERIVSYT---ILIAGGNRETSFHTVLELDYIRLI 352
            F+  + + + LS  ++ + V + I   I S+    +L A  N   +FH + ++D +   
Sbjct: 77  PFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVDIV--- 136

Query: 353 TWTEENHGLYQGWSNDNALGEETAILEEA------RPVTEKVEENG--EEMGD--CSICL 412
                    Y  W + +   +  A+ + A      R + EK + NG  E+ GD  CS+C 
Sbjct: 137 ---------YTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCY 196

Query: 413 EELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 451
           E+L G        E +K +EV R+ CGH+YH+SCI  WL  ++SCPLCR  L
Sbjct: 197 EQLYGKREN----ENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRREL 229

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g00790.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL5_ARATH	2.3e-06	32.10	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1	[more]
RHA2A_ARATH	4.0e-06	37.88	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1	[more]
ATL64_ARATH	6.8e-06	32.89	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1	[more]

BLAST of Cp4.1LG19g00790.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2W2_CUCSA	2.6e-36	41.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1	[more]
A0A0A0K696_CUCSA	2.6e-36	41.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1	[more]
A0A0A0KYC0_CUCSA	1.3e-24	37.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1	[more]
A0A0A0LRB0_CUCSA	8.1e-22	33.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	5.8e-20	32.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]

BLAST of Cp4.1LG19g00790.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12190.1	1.2e-08	38.57	RING/U-box superfamily protein	[more]
AT3G30460.1	2.0e-08	31.71	RING/U-box superfamily protein	[more]
AT4G05350.1	3.5e-08	40.98	RING/U-box superfamily protein	[more]
AT3G62690.1	1.3e-07	32.10	AtL5	[more]
AT1G15100.1	2.3e-07	37.88	RING-H2 finger A2A	[more]

BLAST of Cp4.1LG19g00790.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454422\|ref\|XP_004144954.1\|	3.7e-36	41.60	PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus]	[more]
gi\|778730084\|ref\|XP_011659694.1\|	3.7e-36	41.60	PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus]	[more]
gi\|778697402\|ref\|XP_011654314.1\|	1.9e-24	37.32	PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus]	[more]
gi\|778674460\|ref\|XP_011650219.1\|	1.2e-21	33.48	PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]	[more]
gi\|700199693\|gb\|KGN54851.1\|	8.3e-20	32.76	hypothetical protein Csa_4G551140 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024766	Znf_RING_H2
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG19g00790	Cp4.1LG19g00790	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG19g00790.1:cds:002	Cp4.1LG19g00790.1:cds:002	CDS
Cp4.1LG19g00790.1:cds:001	Cp4.1LG19g00790.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG19g00790.1	Cp4.1LG19g00790.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 394..446 score: 3.2E-9coord: 169..221 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 394..447 score: 12.652coord: 169..222 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 157..226 score: 4.0E-18coord: 382..449 score: 1.3
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 168..222 score: 2.0E-10coord: 393..447 score: 2.0
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 155..256 score: 1.2E-14coord: 368..417 score: 1.2E-14coord: 16..45 score: 1.2
None	No IPR available	PANTHER	PTHR22763:SF3	E3 UBIQUITIN-PROTEIN LIGASE RNF115	coord: 155..256 score: 1.2E-14coord: 16..45 score: 1.2E-14coord: 368..417 score: 1.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 393..450 score: 9.28E-19coord: 168..231 score: 5.2