CmoCh07G013470 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G013470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING/U-box superfamily protein
LocationCmo_Chr07 : 7629185 .. 7632780 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTCGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATGATCCGGTGTTCCTCCTGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCCTCCTAGTGGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCCATTACATCCGACTGATCACCTGGATGGAAGAAAACCACGGATTGTTCCAGGGATGGAGCAATGACAATGCAGCGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTTACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAACGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAAGTGGCTTCACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTGTGAAATTCTTCATTTCTTTTGGGTCTCATTTTAATTACTCATTTTTTGAGGGGCTCATTTGCAATTACTCTGCTTACACGTGTATGCCCCCACTGCTACTTGTAGCATCATTAACAATAATAAAACTAATTCTTTTTGTTGGAAATTCCTTTTCATGTTCGATAAATATTTTTTTTCATTTTTTTATTTTAAAATTTTAATTTATAAATACTACTTTTTATAAAAATATTTAATTTGTTGTTTTCTTTTTATCAATATTTTAAAACTTAAAATTATAATTATTGTAATATAATTGTGAAAAGAAATACAAATTTTCAAAAAGGAGGTGAAGCACAAAAATCAAACAATTAATCCTCTAATAATTATTATTTTTAAAGAAAAAAAATATATCTTTTTTAGGGATCTAACAAATAGCATTTGAAAAATCGAAACAACATGTCGACTTCAAATATCGATATCAATCATCCTTCGGGCTTCATTGTCGGTGGCCTACCTCGAGCTCGTTCTCAAATCTAACGTATTTGCGGTGGAAAAATTCCCATTCTACCCCTACTTCATGACTTTTTTTTTCTTTTTTTTTTCACCATCAAAATTTAGATTGAATTATTTGTAAGTTAGCTTTTGAAAATAGGTTAGACTTACCCTTTAATTCTCCATCAATTACTTACCAACTTCAATTTGATTTCGATGTTTTTAAACGTTTTAAATTAGTCTATATTAGTTGAGTTTAATTTCAATTTAGTCGAGATGATTTGGATTTAATTATATTATAAAGTTTGGGTTAAATTAGTATAAATATATATATTTATTTATTACTAATTTAGTAGAGATTATCAATTTATTTAAACCAGCGATCTATAGTCATCTCCAATCATTTTCAGTGACCCCTTGGTCACTTTAGTTGTTAGTATTTAATAGCCGTGTTTTATGATAAAAATGTATATTGAATTTAAAGCAAATTAGTATATAAAAATGCATATAAGCATTTAATTTTAAATATTTTTTTATAAAGAAAAAATGCCTTAAATAAATGTAATTTTGAAATACATTTATATTAAAAGACAATGGAAAAGGGCTTAAAATTATCTCAATTTTGTTGGGAAAGAAAAAACAAAGTAAATAATAGAAATTTGGGTCTCTCACGTGCCACTTGCCTCCCTTTCGGATACAAGATTAGATGTAGTCACGTGAATATCACGTGCATTGCTCAATTCATTTTTATCTTTATTATATATTTAAATCAAAATCACACACTTTCAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTCAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATAATAATAATAGTAATAATATTTATAACCTTTCTCAGTAGACACGTTTTAAGACCGTGACAACGATATGTAATGGACATAAACAGACAATATTTACTAGTGATGAGCTTAAACTGTTTCAATCATGAATACTTTTGGTATATTTTCCATTTAATTCAGGCACATATTTGATTCATTTGGTTCATCTGTTATATGGGTATGATTCATGTATGAACATTAATATTATTATCCTTATAAATAAATATATATAAAAAGCTGAGCGGGATCGAAAATAAGGAATATAATCTCTATTCCTAACTAATACGGAGAAATCTATTTCGGTTCTCCCTATTTTTTTATTTAAATTAATTAATAATAATAATAATAAAACTTTTTACAGATAAAAACAAAAATGATATGATCACCAATCACATAAAGTTTAAACCACACCGACAAGTTTGAAAATTTTTAATTACTAAATAAGAAAAAAACAAAACGACCTGATAATGATACTCCAACATATATATATATATATATATATATTAAATAAATTAACTTTTAAAACATGGAAATAAATAATATTTATAAAGCTTAGAATTAAAAATAATTGAATTAAATGTATTTATTTTAAAGTCTACAATTTGCATAGGATGCTGTTATTTTCAGCCACAGGCTGTCGGTCTCCATTCTGTCCACCAAATTCCAAGTGTGACAGCCTGCATTCAACTCTTCCATAATAATAATAATAATAATAGTTAACTGTGCAGTGGTGTCTTGCCTTTATCTGAAATATAGAAGTAGCACGTCACTTGATTATTTTAAAAATAATCCGAACGTGACCCATTGTTAGGGTTAGAGAATGTAAACACAGACAACATGAGATGTATATTTACTACTCTACACACGACCCATACGTGTGAATATGGACCTACCAGGCAGTTCGCACACCTCCTGGACCTTGTGCTGGTAGGGCTAGCGTCTTTGGTGCTGTTGTCGGACACCCGAAAGAAATAGTGAGCGTTGTAGCATCATGATAAACATAACAATCATTTTCCTTTTTGTAACGTACACGTCTGTACTCATCATAAAGAAAATTATCCCGATGCATGTGATATACCCCCATTTTTCTCCATTTCATTTCATTTATATCATAGCCTTCAAAATATGTTTCGAGGGTTATGCGTCATATCAAAACATTTCTTCCTATGTCATCCATGTCATACAACATTTCATATCATGTCATGCGACGTATCAGATTTTTCTTCCATTTCTCTCTTTTCTAGAG

mRNA sequence

ATGTCTTTCGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATGATCCGGTGTTCCTCCTGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCCTCCTAGTGGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCCATTACATCCGACTGATCACCTGGATGGAAGAAAACCACGGATTGTTCCAGGGATGGAGCAATGACAATGCAGCGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTTACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAACGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAAGTGGCTTCACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTAAAAAATGCCTTAAATAAATAG

Coding sequence (CDS)

ATGTCTTTCGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGTCTGCAGGAACTCCATGATCCGGTGTTCCTCCTGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTCCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCCTCCTAGTGGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCCATTACATCCGACTGATCACCTGGATGGAAGAAAACCACGGATTGTTCCAGGGATGGAGCAATGACAATGCAGCGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTTACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAACGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAAGTGGCTTCACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTAAAAAATGCCTTAAATAAATAG
Homology
[Close]
BLAST of CmoCh07G013470 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-07
Identity = 28/90 (31.11%), Postives = 45/90 (50.00%), Query Frame = 1 

Query: 144 SNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQ 203
           S+ + +  +  +LE+       V+ +   + +CS+CL E   +  G          +  +
Sbjct: 81  SSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR---------VLPK 140

Query: 204 CGHVYHESCIFKWLHHNSSCPLCRAPLKNA 234
           CGHV+H  CI  W    SSCPLCRAP++ A
Sbjct: 141 CGHVFHVDCIDTWFRSRSSCPLCRAPVQPA 161

[Close]
BLAST of CmoCh07G013470 vs. Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-06
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 1 

Query: 168 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHH-NSSCPLC 227
           + G    DC +CL +L          K+ EEV +++C HV+H+ C+  WLH  N +CPLC
Sbjct: 78  DGGGGGSDCVVCLSKL----------KEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLC 131

Query: 228 RAPL 231
           R+ L
Sbjct: 138 RSAL 131

[Close]
BLAST of CmoCh07G013470 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.0e-06
Identity = 23/61 (37.70%), Postives = 31/61 (50.82%), Query Frame = 1 

Query: 171 EEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCRAPL 230
           EE  +CS+CL E      G          +  +CGH +H  CI  W    S+CPLCRAP+
Sbjct: 103 EEKEECSVCLSEFEEEDEGR---------LLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 154

Query: 231 K 232
           +
Sbjct: 163 Q 154

[Close]
BLAST of CmoCh07G013470 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.9e-39
Identity = 104/243 (42.80%), Postives = 142/243 (58.44%), Query Frame = 1 

Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPIL 60
           MSF  S PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I 
Sbjct: 1   MSFAISNPIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIP 60

Query: 61  LRNLLFPLRLQELHDPVFLLVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSF 120
             N LF L L++L  P+F   Y+ Q+LS LN+R    + +A RI S+ L +   N ET+F
Sbjct: 61  YHNALFYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HTVLELHYIRLITWMEENHGLFQGWSNDNAAGEETAILEEARPVTE-----------KVE 180
           H + E+ +IRLI W+    G         A  EET +L+EA P  +           + E
Sbjct: 121 HILAEVDFIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSE 180

Query: 181 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCR 231
           E  EE+GDCSICL+EL+          ++ EV+R+ CGHVYHESCIFKWL +++SCPLCR
Sbjct: 181 EKMEELGDCSICLDELS---------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCR 218

[Close]
BLAST of CmoCh07G013470 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.9e-39
Identity = 104/243 (42.80%), Postives = 142/243 (58.44%), Query Frame = 1 

Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPIL 60
           MSF  S PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I 
Sbjct: 1   MSFAISNPIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIP 60

Query: 61  LRNLLFPLRLQELHDPVFLLVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSF 120
             N LF L L++L  P+F   Y+ Q+LS LN+R    + +A RI S+ L +   N ET+F
Sbjct: 61  YHNALFYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HTVLELHYIRLITWMEENHGLFQGWSNDNAAGEETAILEEARPVTE-----------KVE 180
           H + E+ +IRLI W+    G         A  EET +L+EA P  +           + E
Sbjct: 121 HILAEVDFIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSE 180

Query: 181 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCR 231
           E  EE+GDCSICL+EL+          ++ EV+R+ CGHVYHESCIFKWL +++SCPLCR
Sbjct: 181 EKMEELGDCSICLDELS---------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCR 218

[Close]
BLAST of CmoCh07G013470 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 90/239 (37.66%), Postives = 124/239 (51.88%), Query Frame = 1 

Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR 60
           MSF  S PI Y +       +G     VL++QL Y  R ISVS  S    L ET P    
Sbjct: 1   MSFEISSPIPY-LLNANGFGNG-----VLEVQLSYLERAISVSSFSQ-RILYETQPTPFN 60

Query: 61  NLLFPLRLQELHDPVFLLVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNR--ETSF 120
           N LF L + +L  P+F   ++ Q L  LN+R   RE IA +I S+   +  GN    ++F
Sbjct: 61  NALFYLSVHQLQHPLF---HIRQFLYSLNIR---RETIARQIASFVAHMCNGNTGWNSNF 120

Query: 121 HTVLELHYIRLITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSI 180
           + +  +  +R+I   E+     +GW     A E  + L+             EE GDCS+
Sbjct: 121 YVIARVDLVRVIRIEEQPRA--EGWRG--VAVERLSKLKSE-----------EEKGDCSV 180

Query: 181 CLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCRA--PLKNALN 236
           CL+EL+          ++ EVIR+ CGHVYHESCIFKWL+ ++SCPLCR+  PL N  N
Sbjct: 181 CLDELDC---------EKREVIRIPCGHVYHESCIFKWLNSSNSCPLCRSSFPLHNVTN 202

[Close]
BLAST of CmoCh07G013470 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.5e-22
Identity = 76/223 (34.08%), Postives = 124/223 (55.61%), Query Frame = 1 

Query: 18  SAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHDPVFL 77
           SAA+  QP Q ++L+L +F  ++ +SP   +  LQ+T+PIL+ + L    L+EL DP F+
Sbjct: 20  SAATNGQPLQFVELRLGHFS-QLVLSPSHQI--LQQTSPILISDTLIRFPLRELEDPPFI 79

Query: 78  L-VYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHTVLELHYIRLITWMEEN 137
               + + LS  N+   V + I  +I S+   +  GN  ++FH +  L ++         
Sbjct: 80  SHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV--------- 139

Query: 138 HGLFQGWSNDNAAGEETAILEEA------RPVTEKVEENG-EEMGD-CSICLEELNGNGN 197
              +  W + + A +  A+ + A      R + EK + NG EEM D CS+C E+L+G   
Sbjct: 140 ---YTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHG--- 199

Query: 198 GNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCRAPLK 232
              + +K +EV R+ CGH++H+SCI KWL  ++SCPLCR  L+
Sbjct: 200 ---KTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]
BLAST of CmoCh07G013470 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-21
Identity = 80/228 (35.09%), Postives = 125/228 (54.82%), Query Frame = 1 

Query: 15  GYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHDP 74
           G +S A+  QP Q +QL+LR+F + +  +P   +  LQ+T+P L+ + L P  L EL DP
Sbjct: 17  GKSSLATDGQPLQFVQLRLRHFGQLVH-TPSQQI--LQQTSPTLISDTLIPFSLWELEDP 76

Query: 75  VFL-LVYVAQLLSLLNVRSPVREVIAERIVSYT---LLVAGGNRETSFHTVLELHYIRLI 134
            F+   ++ + LS  ++ + V + I   I S+    LL A  N   +FH + ++  +   
Sbjct: 77  PFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVDIVY-- 136

Query: 135 TWMEENHGLFQGWSNDNAA---GEETAILEEARPVTEKVEENG--EEMGD--CSICLEEL 194
                 H +    + D  A   G  T+++E  R + EK + NG  E+ GD  CS+C E+L
Sbjct: 137 -----THWVDLDPAEDAPAVRKGASTSVIE--RVMKEKYDGNGGEEKEGDDQCSVCYEQL 196

Query: 195 NGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCRAPLK 232
            G      E +K +EV R+ CGH+YH+SCI KWL  ++SCPLCR  L+
Sbjct: 197 YGKREN--ENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELE 230

[Close]
BLAST of CmoCh07G013470 vs. TAIR10
Match: AT4G12190.1 (AT4G12190.1 RING/U-box superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-09
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 1 

Query: 163 TEKVEENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSS 222
           TE+++    E   CSICLE L         G K  ++ RM C HV+H  C+ +WL   ++
Sbjct: 9   TEELKSLKMETEPCSICLESLVS-------GPKPRDITRMTCSHVFHNGCLLEWLKRKNT 68

Query: 223 CPLCRAPL 231
           CPLCR  L
Sbjct: 69  CPLCRTEL 69

[Close]
BLAST of CmoCh07G013470 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-08
Identity = 25/59 (42.37%), Postives = 32/59 (54.24%), Query Frame = 1 

Query: 172 EMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCRAPL 231
           E   CSICLE L         G K  +V RM C HV+H  C+ +WL   ++CPLCR  +
Sbjct: 153 ETEPCSICLESLVS-------GPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEI 204

[Close]
BLAST of CmoCh07G013470 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-08
Identity = 28/90 (31.11%), Postives = 45/90 (50.00%), Query Frame = 1 

Query: 144 SNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQ 203
           S+ + +  +  +LE+       V+ +   + +CS+CL E   +  G          +  +
Sbjct: 81  SSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR---------VLPK 140

Query: 204 CGHVYHESCIFKWLHHNSSCPLCRAPLKNA 234
           CGHV+H  CI  W    SSCPLCRAP++ A
Sbjct: 141 CGHVFHVDCIDTWFRSRSSCPLCRAPVQPA 161

[Close]
BLAST of CmoCh07G013470 vs. TAIR10
Match: AT2G37150.3 (AT2G37150.3 RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-08
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1 

Query: 171 EEMGDCSICLEELNGNGNGNGEGKKREEVIRMQ-CGHVYHESCIFKWLHHNSSCPLCRAP 230
           EE   C+ICLEE           K++EE+  ++ CGH YH  CI KWL   +SCP+C++P
Sbjct: 540 EEQRKCAICLEEY----------KEKEELGEVKGCGHDYHGRCIKKWLSMKNSCPICKSP 589

[Close]
BLAST of CmoCh07G013470 vs. TAIR10
Match: AT5G37200.1 (AT5G37200.1 RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-08
Identity = 33/103 (32.04%), Postives = 57/103 (55.34%), Query Frame = 1 

Query: 130 ITWMEENHGLFQ---GWSNDNAAGEET-AILEEARPVTEKVEENGEEMGDCSICLEELNG 189
           +T+++E   +F       +  A+GE    ++EE R  +  +EE  E    CSIC+E+ + 
Sbjct: 112 VTYIKERRVIFPHGPSLLSRGASGEVFHRLVEEQRVESADLEEEDET---CSICIEKFS- 171

Query: 190 NGNGNGEGKKREEVIRM-QCGHVYHESCIFKWLHHNSSCPLCR 228
                   +  E++IR+  C H++H+ C+F+WL   +SCPLCR
Sbjct: 172 --------ESHEDIIRVPDCLHLFHQGCLFEWLGLQNSCPLCR 202

[Close]
BLAST of CmoCh07G013470 vs. NCBI nr
Match: gi|449454422|ref|XP_004144954.1| (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 4.2e-39
Identity = 104/243 (42.80%), Postives = 142/243 (58.44%), Query Frame = 1 

Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPIL 60
           MSF  S PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I 
Sbjct: 1   MSFAISNPIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIP 60

Query: 61  LRNLLFPLRLQELHDPVFLLVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSF 120
             N LF L L++L  P+F   Y+ Q+LS LN+R    + +A RI S+ L +   N ET+F
Sbjct: 61  YHNALFYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HTVLELHYIRLITWMEENHGLFQGWSNDNAAGEETAILEEARPVTE-----------KVE 180
           H + E+ +IRLI W+    G         A  EET +L+EA P  +           + E
Sbjct: 121 HILAEVDFIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSE 180

Query: 181 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCR 231
           E  EE+GDCSICL+EL+          ++ EV+R+ CGHVYHESCIFKWL +++SCPLCR
Sbjct: 181 EKMEELGDCSICLDELS---------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCR 218

[Close]
BLAST of CmoCh07G013470 vs. NCBI nr
Match: gi|778730084|ref|XP_011659694.1| (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 4.2e-39
Identity = 104/243 (42.80%), Postives = 142/243 (58.44%), Query Frame = 1 

Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPIL 60
           MSF  S PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I 
Sbjct: 1   MSFAISNPIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIP 60

Query: 61  LRNLLFPLRLQELHDPVFLLVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSF 120
             N LF L L++L  P+F   Y+ Q+LS LN+R    + +A RI S+ L +   N ET+F
Sbjct: 61  YHNALFYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HTVLELHYIRLITWMEENHGLFQGWSNDNAAGEETAILEEARPVTE-----------KVE 180
           H + E+ +IRLI W+    G         A  EET +L+EA P  +           + E
Sbjct: 121 HILAEVDFIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSE 180

Query: 181 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCR 231
           E  EE+GDCSICL+EL+          ++ EV+R+ CGHVYHESCIFKWL +++SCPLCR
Sbjct: 181 EKMEELGDCSICLDELS---------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCR 218

[Close]
BLAST of CmoCh07G013470 vs. NCBI nr
Match: gi|778697402|ref|XP_011654314.1| (PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 2.6e-25
Identity = 90/239 (37.66%), Postives = 124/239 (51.88%), Query Frame = 1 

Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR 60
           MSF  S PI Y +       +G     VL++QL Y  R ISVS  S    L ET P    
Sbjct: 1   MSFEISSPIPY-LLNANGFGNG-----VLEVQLSYLERAISVSSFSQ-RILYETQPTPFN 60

Query: 61  NLLFPLRLQELHDPVFLLVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNR--ETSF 120
           N LF L + +L  P+F   ++ Q L  LN+R   RE IA +I S+   +  GN    ++F
Sbjct: 61  NALFYLSVHQLQHPLF---HIRQFLYSLNIR---RETIARQIASFVAHMCNGNTGWNSNF 120

Query: 121 HTVLELHYIRLITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSI 180
           + +  +  +R+I   E+     +GW     A E  + L+             EE GDCS+
Sbjct: 121 YVIARVDLVRVIRIEEQPRA--EGWRG--VAVERLSKLKSE-----------EEKGDCSV 180

Query: 181 CLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCRA--PLKNALN 236
           CL+EL+          ++ EVIR+ CGHVYHESCIFKWL+ ++SCPLCR+  PL N  N
Sbjct: 181 CLDELDC---------EKREVIRIPCGHVYHESCIFKWLNSSNSCPLCRSSFPLHNVTN 202

[Close]
BLAST of CmoCh07G013470 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 7.9e-22
Identity = 76/223 (34.08%), Postives = 124/223 (55.61%), Query Frame = 1 

Query: 18  SAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHDPVFL 77
           SAA+  QP Q ++L+L +F  ++ +SP   +  LQ+T+PIL+ + L    L+EL DP F+
Sbjct: 20  SAATNGQPLQFVELRLGHFS-QLVLSPSHQI--LQQTSPILISDTLIRFPLRELEDPPFI 79

Query: 78  L-VYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHTVLELHYIRLITWMEEN 137
               + + LS  N+   V + I  +I S+   +  GN  ++FH +  L ++         
Sbjct: 80  SHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV--------- 139

Query: 138 HGLFQGWSNDNAAGEETAILEEA------RPVTEKVEENG-EEMGD-CSICLEELNGNGN 197
              +  W + + A +  A+ + A      R + EK + NG EEM D CS+C E+L+G   
Sbjct: 140 ---YTHWVDLDPAEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHG--- 199

Query: 198 GNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCRAPLK 232
              + +K +EV R+ CGH++H+SCI KWL  ++SCPLCR  L+
Sbjct: 200 ---KTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]
BLAST of CmoCh07G013470 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 3.9e-21
Identity = 80/228 (35.09%), Postives = 125/228 (54.82%), Query Frame = 1 

Query: 15  GYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHDP 74
           G +S A+  QP Q +QL+LR+F + +  +P   +  LQ+T+P L+ + L P  L EL DP
Sbjct: 17  GKSSLATDGQPLQFVQLRLRHFGQLVH-TPSQQI--LQQTSPTLISDTLIPFSLWELEDP 76

Query: 75  VFL-LVYVAQLLSLLNVRSPVREVIAERIVSYT---LLVAGGNRETSFHTVLELHYIRLI 134
            F+   ++ + LS  ++ + V + I   I S+    LL A  N   +FH + ++  +   
Sbjct: 77  PFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADVDIVY-- 136

Query: 135 TWMEENHGLFQGWSNDNAA---GEETAILEEARPVTEKVEENG--EEMGD--CSICLEEL 194
                 H +    + D  A   G  T+++E  R + EK + NG  E+ GD  CS+C E+L
Sbjct: 137 -----THWVDLDPAEDAPAVRKGASTSVIE--RVMKEKYDGNGGEEKEGDDQCSVCYEQL 196

Query: 195 NGNGNGNGEGKKREEVIRMQCGHVYHESCIFKWLHHNSSCPLCRAPLK 232
            G      E +K +EV R+ CGH+YH+SCI KWL  ++SCPLCR  L+
Sbjct: 197 YGKREN--ENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELE 230

The following BLAST results are available for this feature:
BLAST of CmoCh07G013470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL5_ARATH4.2e-0731.11RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1[more]
RHA2A_ARATH3.6e-0639.06E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1[more]
ATL64_ARATH8.0e-0637.70RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1[more]
BLAST of CmoCh07G013470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K696_CUCSA2.9e-3942.80Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
A0A0A0K2W2_CUCSA2.9e-3942.80Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1[more]
A0A0A0KYC0_CUCSA1.8e-2537.66Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1[more]
A0A0A0LRB0_CUCSA5.5e-2234.08Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA2.7e-2135.09Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
BLAST of CmoCh07G013470 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G12190.13.7e-0939.71 RING/U-box superfamily protein[more]
AT4G05350.11.1e-0842.37 RING/U-box superfamily protein[more]
AT3G62690.12.4e-0831.11 AtL5[more]
AT2G37150.36.9e-0843.33 RING/U-box superfamily protein[more]
AT5G37200.16.9e-0832.04 RING/U-box superfamily protein[more]
BLAST of CmoCh07G013470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454422|ref|XP_004144954.1|4.2e-3942.80PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus][more]
gi|778730084|ref|XP_011659694.1|4.2e-3942.80PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus][more]
gi|778697402|ref|XP_011654314.1|2.6e-2537.66PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Cucumis sativus][more]
gi|778674460|ref|XP_011650219.1|7.9e-2234.08PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|3.9e-2135.09hypothetical protein Csa_4G551140 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G013470.1CmoCh07G013470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 175..227
score: 1.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 176..226
score: 4.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 176..227
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 164..232
score: 1.2
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 4..16
score: 5.4E-15coord: 91..230
score: 5.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 175..232
score: 5.52

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G013470CmaCh07G013020Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G013470MELO3C009075Melon (DHL92) v3.5.1cmomeB794
CmoCh07G013470ClCG04G000540Watermelon (Charleston Gray)cmowcgB771
CmoCh07G013470Lsi01G019150Bottle gourd (USVL1VR-Ls)cmolsiB780
CmoCh07G013470Cp4.1LG19g00790Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G013470Cp4.1LG10g11750Cucurbita pepo (Zucchini)cmocpeB803
CmoCh07G013470MELO3C009075.2Melon (DHL92) v3.6.1cmomedB898
CmoCh07G013470Bhi03G002247Wax gourdcmowgoB1060
CmoCh07G013470Bhi03G002162Wax gourdcmowgoB1068
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh07G013470CmoCh03G000880Cucurbita moschata (Rifu)cmocmoB461
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G013470Cucumber (Gy14) v2cgybcmoB539
CmoCh07G013470Melon (DHL92) v3.6.1cmomedB897
CmoCh07G013470Silver-seed gourdcarcmoB0275
CmoCh07G013470Silver-seed gourdcarcmoB0395
CmoCh07G013470Cucumber (Chinese Long) v3cmocucB1001
CmoCh07G013470Watermelon (97103) v2cmowmbB869
CmoCh07G013470Cucurbita maxima (Rimu)cmacmoB674
CmoCh07G013470Wild cucumber (PI 183967)cmocpiB858
CmoCh07G013470Cucumber (Chinese Long) v2cmocuB849
CmoCh07G013470Watermelon (97103) v1cmowmB819
CmoCh07G013470Bottle gourd (USVL1VR-Ls)cmolsiB778