Cp4.1LG18g07300 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g07300
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG18 : 7119080 .. 7120499 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGCATCGCTCCTCACACATATCCTCCTTGAGGCAGCAGTATTACGAATGTCGCTTGCTGTTATGCAGTTGGAGTTAAGTTTGGTGGTGTCTTGCTGTGATGCAGCAGGTTACCTAATATTCAAGAGAACTGCCTATTTTCTTTCCTCACAAACAACTGCTCACATTGTATCCTTCTGTCAGTAGATGTAGAAATTTACAATGCAAAGCAACCACTCCATAAGCAATCGTAATTTTTATATGCAAAAGTGAACAACTTGAGTCCTCACCCTGTTCTATATCCTGCATAATTCAATGCACATTCAACCTCCAATGATTGTTCATTAGTTGTAGCTGCTTTTGCAAGATAAGATGCTCAATGGAAAGAAATCCACTTAAAGTAAAGAACTATTCATGCCAGATGAATTTGATTTTCAGACAAGCAATGGGTAACTTTTCAACTTTTCATCTCTCTTATTCTTGTTTACAGTAGTTATCTTTGAAGGAAGAAAAAAGGGAAGATACCAATTATTGTAGGAAAGTCTGTTCTGAATTTATTGTCCGTAGTATACTTTAAAGATACTGGACCAGCCGTTGCCCCACCTGTGTGTGATCCAATGCAACATGGTCAATATCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAAGTTCCCTCTCCCTTTCTCTTTCTCCCCCAACCACACACACACACACAACCCCCCCCTCCCAAATGATGGTTTGGTTTGAATGTTCTCTGTTGTCAAATAGTTGTGCTGGCTTGGGTCGCTACTGCTGCCTAGATATCTGCTTCTAGGGATGGGAGGACCTTGCAAAGGCCACTTGGCCCCTGCACTTACTAGTTTGTCTGACACAAGTTACCTTCTGGGTTCTCATGAGCATGTAGTATGTTTCTCTGTAAACTACGGTTGCCATCTGATTTCAGGACTATGGGACTTAATTTTCGAGTAAGAGAGATGAACTAATCCTAAAGAAGATCACTTTTTTTTTTTTTTAATCAGAAATAGATTAGTACAACAAAACTGAAGAAAGTTTCTTAGAGTAAGAGCTCAGTTCTTAGGTCAAATAGTTGAAAATTTATCTCTCTTCTTTATGACACTACTTTCCATACATTTCTCTATGAATCTCACTATAACCAAACAGTTTCTACTTTTCTTTCTTCAACGCTCATCAACTCACTAATTCCCAACAAAAGAGACAGGCTTTGCCATGTACCTGGGATGATCATCCCCAGCCATGATTACGGCTATATTTGGAGTAGTATCAAACTGCTCGTTTCCTGTGTTCTTGCTTGCTTTTTCTTTGTCGTCGTTGATAGGAGAATTTCGCATCTGCATTTGGTGAGAGCAAGCAAGGAAAAAAAGAACAGCAGAAGTGA

mRNA sequence

ATGTTCGCATCGCTCCTCACACATATCCTCCTTGAGGCAGCAGTATTACGAATGTCGCTTGCTGTTATGCAGTTGGAGTTAAGTTTGGTGGTGTCTTGCTGTGATGCAGCAGTATACTTTAAAGATACTGGACCAGCCGTTGCCCCACCTGTGTGTGATCCAATGCAACATGGTCAATATCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTATATCTGCTTCTAGGGATGGGAGGACCTTGCAAAGGCCACTTGGCCCCTGCACTTACTAGTTTGTCTGACACAAGTTACCTTCTGGGTTCTCATGAGCATGTAGAGAATTTCGCATCTGCATTTGGTGAGAGCAAGCAAGGAAAAAAAGAACAGCAGAAGTGA

Coding sequence (CDS)

ATGTTCGCATCGCTCCTCACACATATCCTCCTTGAGGCAGCAGTATTACGAATGTCGCTTGCTGTTATGCAGTTGGAGTTAAGTTTGGTGGTGTCTTGCTGTGATGCAGCAGTATACTTTAAAGATACTGGACCAGCCGTTGCCCCACCTGTGTGTGATCCAATGCAACATGGTCAATATCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTATATCTGCTTCTAGGGATGGGAGGACCTTGCAAAGGCCACTTGGCCCCTGCACTTACTAGTTTGTCTGACACAAGTTACCTTCTGGGTTCTCATGAGCATGTAGAGAATTTCGCATCTGCATTTGGTGAGAGCAAGCAAGGAAAAAAAGAACAGCAGAAGTGA

Protein sequence

MFASLLTHILLEAAVLRMSLAVMQLELSLVVSCCDAAVYFKDTGPAVAPPVCDPMQHGQYQPYPPIVPPQGETKSRGDGFCRGLYLLLGMGGPCKGHLAPALTSLSDTSYLLGSHEHVENFASAFGESKQGKKEQQK
Homology
[Close]
BLAST of Cp4.1LG18g07300 vs. TrEMBL
Match: A0A0A0LPD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 41/59 (69.49%), Postives = 42/59 (71.19%), Query Frame = 1 

Query: 40  FKDTGPA---VAPPVCDPMQHGQYQPYPPIVPPQGETKS-----------RGDGFCRGL 85
           F DTGP    VAPP+CDPMQHGQ QPYPPIVPPQGETKS           RGDGFCRGL
Sbjct: 65  FIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 123

[Close]
BLAST of Cp4.1LG18g07300 vs. NCBI nr
Match: gi|700208659|gb|KGN63755.1| (hypothetical protein Csa_1G014520 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 41/59 (69.49%), Postives = 42/59 (71.19%), Query Frame = 1 

Query: 40  FKDTGPA---VAPPVCDPMQHGQYQPYPPIVPPQGETKS-----------RGDGFCRGL 85
           F DTGP    VAPP+CDPMQHGQ QPYPPIVPPQGETKS           RGDGFCRGL
Sbjct: 65  FIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL 123

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g07300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g07300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPD8_CUCSA1.8e-1269.49Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014520 PE=4 SV=1[more]
BLAST of Cp4.1LG18g07300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g07300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208659|gb|KGN63755.1|2.5e-1269.49hypothetical protein Csa_1G014520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g07300.1Cp4.1LG18g07300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g07300Cucsa.198460Cucumber (Gy14) v1cgycpeB0555
Cp4.1LG18g07300CmoCh11G002400Cucurbita moschata (Rifu)cmocpeB105
Cp4.1LG18g07300Csa1G014520Cucumber (Chinese Long) v2cpecuB352
Cp4.1LG18g07300ClCG06G015320Watermelon (Charleston Gray)cpewcgB337
Cp4.1LG18g07300CSPI01G03140Wild cucumber (PI 183967)cpecpiB353
Cp4.1LG18g07300Lsi06G013760Bottle gourd (USVL1VR-Ls)cpelsiB306
Cp4.1LG18g07300CsaV3_1G003200Cucumber (Chinese Long) v3cpecucB0431
Cp4.1LG18g07300CsGy1G003110Cucumber (Gy14) v2cgybcpeB056
Cp4.1LG18g07300Carg09174Silver-seed gourdcarcpeB0845
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG18g07300Cp4.1LG04g14490Cucurbita pepo (Zucchini)cpecpeB364
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g07300Wax gourdcpewgoB0449
Cp4.1LG18g07300Wax gourdcpewgoB0467
Cp4.1LG18g07300Cucurbita pepo (Zucchini)cpecpeB026
Cp4.1LG18g07300Cucurbita pepo (Zucchini)cpecpeB027
Cp4.1LG18g07300Cucurbita pepo (Zucchini)cpecpeB032
Cp4.1LG18g07300Cucurbita pepo (Zucchini)cpecpeB348
Cp4.1LG18g07300Cucurbita pepo (Zucchini)cpecpeB349
Cp4.1LG18g07300Cucumber (Gy14) v1cgycpeB0252
Cp4.1LG18g07300Cucumber (Gy14) v1cgycpeB0557
Cp4.1LG18g07300Cucumber (Gy14) v1cgycpeB0749
Cp4.1LG18g07300Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g07300Cucurbita maxima (Rimu)cmacpeB128
Cp4.1LG18g07300Cucurbita maxima (Rimu)cmacpeB229
Cp4.1LG18g07300Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g07300Cucurbita moschata (Rifu)cmocpeB196
Cp4.1LG18g07300Cucurbita moschata (Rifu)cmocpeB390
Cp4.1LG18g07300Cucurbita moschata (Rifu)cmocpeB391
Cp4.1LG18g07300Wild cucumber (PI 183967)cpecpiB358
Cp4.1LG18g07300Wild cucumber (PI 183967)cpecpiB364
Cp4.1LG18g07300Cucumber (Chinese Long) v2cpecuB357
Cp4.1LG18g07300Cucumber (Chinese Long) v2cpecuB364
Cp4.1LG18g07300Bottle gourd (USVL1VR-Ls)cpelsiB286
Cp4.1LG18g07300Watermelon (Charleston Gray)cpewcgB331
Cp4.1LG18g07300Watermelon (97103) v1cpewmB374
Cp4.1LG18g07300Watermelon (97103) v1cpewmB367
Cp4.1LG18g07300Melon (DHL92) v3.5.1cpemeB322
Cp4.1LG18g07300Melon (DHL92) v3.5.1cpemeB336
Cp4.1LG18g07300Cucumber (Gy14) v2cgybcpeB041
Cp4.1LG18g07300Cucumber (Gy14) v2cgybcpeB046
Cp4.1LG18g07300Cucumber (Gy14) v2cgybcpeB621
Cp4.1LG18g07300Melon (DHL92) v3.6.1cpemedB378
Cp4.1LG18g07300Melon (DHL92) v3.6.1cpemedB382
Cp4.1LG18g07300Melon (DHL92) v3.6.1cpemedB394
Cp4.1LG18g07300Silver-seed gourdcarcpeB0543
Cp4.1LG18g07300Silver-seed gourdcarcpeB0646
Cp4.1LG18g07300Silver-seed gourdcarcpeB0723
Cp4.1LG18g07300Cucumber (Chinese Long) v3cpecucB0436
Cp4.1LG18g07300Cucumber (Chinese Long) v3cpecucB0445
Cp4.1LG18g07300Cucumber (Chinese Long) v3cpecucB0463