CsaV3_1G003200 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G003200
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 1982024 .. 1982948 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGAGTTGTACCATCGTCACCTTGGAGAAAATTGAGGTTTACACTAAAGACGTGTCGATCAAGATCGCTCCTCCATTTGACTTCATGGATATTATTCCCCTTGAAGCAGTTGGGCGGTATAAAGAATGTATCTTGTTGTTATGCAGTTGGATTTACAATTTTGGTGGTCTTGCTGTGATGAAGCAGGTTACCTAAATTTCAAGAGAACTACCTATTTTCTTTCCTCACAAACAACTGCTAACATTGTATCTTTCTGTCAGTAGGTGTAGAAATTTGTAGAAATTTACAAAGAAAAGCAACCACTCCACGATCTATCTTATTTCTTTATAGGCAAAAGTGAACAACTTGAATCCTCACTCTGTTTTATACCTTGCCTAATTCAATGCACATCCAACCTCCAACCAAACAAAGTCAAAGAGTTCTAAAACATGAAACAAAATTTTCAGAACCAACCTCAAGGTCATCTTTTTATCTTCTTCTATCAATAATTGTTCTTTAGTTGTAGCTACTTTTCCAAGAGATGATGCTGAAATAGAAAGGAAAATCCATTAAAGTAAAGAATTATTTGTGCCAGATGATTTGATTTCCATATAAAGTAATTAGTAACTTTTCAAAATTTTCATCTTTAGTTTTTCTTGTTCTCTATAGTTTCTTTTGAAGGGAAAACAAAACGAAAAAAATAAAAGATTATAAATTATTGTAGGAAAGTTTGTTCTGATTTTTTTGTCTGTAGCATAATTTTATAGATACTGGACCAGGTCCTTACCAAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGACTCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACTAAATCTGAAACTGTACCTCCGTCAATGAAAACTAAGTTTAGAGGTGATGGGTTTTGCAGAGGATTGTAA

mRNA sequence

ATGGCAATGAGTTGTACCATCGTCACCTTGGAGAAAATTGAGGTTTACACTAAAGACGTGTCGATCAAGATCGCTCCTCCATTTGACTTCATGGATATTATTCCCCTTGAAGCAGTTGGGCGGTATAAAGAATGTATCTTGTTGTTATGCAGTTGGATTTACAATTTTGGTGGTCTTGCTGTGATGAAGCAGCATAATTTTATAGATACTGGACCAGGTCCTTACCAAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGACTCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACTAAATCTGAAACTGTACCTCCGTCAATGAAAACTAAGTTTAGAGGTGATGGGTTTTGCAGAGGATTGTAA

Coding sequence (CDS)

ATGGCAATGAGTTGTACCATCGTCACCTTGGAGAAAATTGAGGTTTACACTAAAGACGTGTCGATCAAGATCGCTCCTCCATTTGACTTCATGGATATTATTCCCCTTGAAGCAGTTGGGCGGTATAAAGAATGTATCTTGTTGTTATGCAGTTGGATTTACAATTTTGGTGGTCTTGCTGTGATGAAGCAGCATAATTTTATAGATACTGGACCAGGTCCTTACCAAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGACTCAGCCATACCCTCCAATTGTACCTCCTCAAGGGGAAACTAAATCTGAAACTGTACCTCCGTCAATGAAAACTAAGTTTAGAGGTGATGGGTTTTGCAGAGGATTGTAA

Protein sequence

MAMSCTIVTLEKIEVYTKDVSIKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVMKQHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRGL
Homology
[Close]
BLAST of CsaV3_1G003200 vs. NCBI nr
Match: KGN63755.1 (hypothetical protein Csa_1G014520 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 6.4e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 3   MSCTIVTLEKIEVYTKDVSIKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVM 62
           MSCTIVTLEKIEVYTKDVSIKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVM
Sbjct: 1   MSCTIVTLEKIEVYTKDVSIKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVM 60

Query: 63  KQHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC 122
           KQHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC
Sbjct: 61  KQHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC 120

Query: 123 RGL 126
           RGL
Sbjct: 121 RGL 123

[Close]
BLAST of CsaV3_1G003200 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 64  QHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCR 123
           Q+   DTGPGPY VAPPMCDPMQHGQ+QPY  I+PPQGETKS+ V P  +T  +GDGFCR
Sbjct: 6   QNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCR 65

[Close]
BLAST of CsaV3_1G003200 vs. TrEMBL
Match: tr|A0A0A0LPD8|A0A0A0LPD8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 4.3e-67
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 3   MSCTIVTLEKIEVYTKDVSIKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVM 62
           MSCTIVTLEKIEVYTKDVSIKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVM
Sbjct: 1   MSCTIVTLEKIEVYTKDVSIKIAPPFDFMDIIPLEAVGRYKECILLLCSWIYNFGGLAVM 60

Query: 63  KQHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC 122
           KQHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC
Sbjct: 61  KQHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFC 120

Query: 123 RGL 126
           RGL
Sbjct: 121 RGL 123

The following BLAST results are available for this feature:
BLAST of CsaV3_1G003200 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63755.16.4e-67100.00hypothetical protein Csa_1G014520 [Cucumis sativus][more]
XP_022969088.11.4e-1670.00cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi... [more]
BLAST of CsaV3_1G003200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003200 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPD8|A0A0A0LPD8_CUCSA4.3e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G003200.1CsaV3_1G003200.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..110

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G003200CSPI01G03140Wild cucumber (PI 183967)cpicucB001
CsaV3_1G003200Cucsa.198460Cucumber (Gy14) v1cgycucB314
CsaV3_1G003200CmaCh11G002360Cucurbita maxima (Rimu)cmacucB0115
CsaV3_1G003200CmoCh11G002400Cucurbita moschata (Rifu)cmocucB0103
CsaV3_1G003200Cp4.1LG18g07300Cucurbita pepo (Zucchini)cpecucB0431
CsaV3_1G003200Cp4.1LG04g14490Cucurbita pepo (Zucchini)cpecucB0798
CsaV3_1G003200CsGy1G003110Cucumber (Gy14) v2cgybcucB002
CsaV3_1G003200Carg09174Silver-seed gourdcarcucB0627
CsaV3_1G003200ClCG06G015320Watermelon (Charleston Gray)cucwcgB077
CsaV3_1G003200Lsi06G013760Bottle gourd (USVL1VR-Ls)cuclsiB071
CsaV3_1G003200MELO3C029750.2Melon (DHL92) v3.6.1cucmedB043
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G003200Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G003200Cucumber (Chinese Long) v3cuccucB004
CsaV3_1G003200Silver-seed gourdcarcucB0419
CsaV3_1G003200Silver-seed gourdcarcucB0494
CsaV3_1G003200Silver-seed gourdcarcucB0497
CsaV3_1G003200Silver-seed gourdcarcucB0549
CsaV3_1G003200Silver-seed gourdcarcucB0629
CsaV3_1G003200Cucumber (Gy14) v2cgybcucB003
CsaV3_1G003200Cucumber (Gy14) v2cgybcucB013
CsaV3_1G003200Cucumber (Gy14) v1cgycucB146
CsaV3_1G003200Cucurbita maxima (Rimu)cmacucB0061
CsaV3_1G003200Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G003200Cucurbita maxima (Rimu)cmacucB0244
CsaV3_1G003200Cucurbita maxima (Rimu)cmacucB0252
CsaV3_1G003200Cucurbita maxima (Rimu)cmacucB0466
CsaV3_1G003200Cucurbita moschata (Rifu)cmocucB0047
CsaV3_1G003200Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G003200Cucurbita moschata (Rifu)cmocucB0230
CsaV3_1G003200Cucurbita moschata (Rifu)cmocucB0463
CsaV3_1G003200Cucurbita pepo (Zucchini)cpecucB0033
CsaV3_1G003200Cucurbita pepo (Zucchini)cpecucB0445
CsaV3_1G003200Cucurbita pepo (Zucchini)cpecucB0627
CsaV3_1G003200Cucurbita pepo (Zucchini)cpecucB0642
CsaV3_1G003200Wild cucumber (PI 183967)cpicucB002
CsaV3_1G003200Wild cucumber (PI 183967)cpicucB016
CsaV3_1G003200Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G003200Bottle gourd (USVL1VR-Ls)cuclsiB042
CsaV3_1G003200Melon (DHL92) v3.5.1cucmeB020
CsaV3_1G003200Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G003200Melon (DHL92) v3.5.1cucmeB046
CsaV3_1G003200Melon (DHL92) v3.6.1cucmedB018
CsaV3_1G003200Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G003200Watermelon (Charleston Gray)cucwcgB062
CsaV3_1G003200Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G003200Watermelon (97103) v1cucwmB069
CsaV3_1G003200Watermelon (97103) v1cucwmB071
CsaV3_1G003200Watermelon (97103) v1cucwmB094
CsaV3_1G003200Watermelon (97103) v2cucwmbB053
CsaV3_1G003200Watermelon (97103) v2cucwmbB055
CsaV3_1G003200Watermelon (97103) v2cucwmbB066
CsaV3_1G003200Wax gourdcucwgoB046
CsaV3_1G003200Wax gourdcucwgoB088