Carg09174 (gene) Silver-seed gourd

Overview
NameCarg09174
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_063 : 905987 .. 906765 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGCAGAAGCTTACAATGCAAAACAACTACTCCACAATCTACCATTTTTTTATGTGCAAAAGTAAACGACTTGAATCTCCACCCTGTTTTATTTCTTGCCTAACTCAATTCACATTCAACCTCCAACAGAGACAAAGCATTCAACACCATGAAACAAAGTTTACAGAACCAAACTCAAGGTCATCCTTCTTTATTTTATTTCTTCTATCAGTAAGAATTATTCATGCCAGATGATTTTGAGTTTCATATAAGCAATCAGTAACTTTTCAAAGTTTCAGTTTTACTTTTTCTTTTCTATATTTTCCTTTGAAGGGGGAAAAAAAGGAAAAGATTATAAATTATTGTAGGAAAGTTTGTTCTGAATTTATTGTCTGTAGCATAATTTTATAGATACTGGACCAGGTCCTTACCCAGTTGCCCCACCTATGTGTGATCCAATGCAACACGGTCAGTCTCAGCCATACTCTTCAATTATACCTCCTCAAGGGGAAACCAAGTTTCAAAATGTAGCTCCTCCAAGGGAAACCATGTCTAAAGGTGATGGGTTTTGCAGAGGACTGTAAGTTCCCTTTCTCCCACAAAAAGGAAAAAAAGAGGACACTATTTATGCTATGGTTTGAATTTTCTCTGTTGTCAAAATAGTTGTGCAGGCTGGTGTTGCTACTGCTGCCTAGATATCTGCTTCTAGGGATGGAGGATCCTTGCAAATGCCACTTTGCGCCAGCACTTCTAGTTCGTCTGACACAAGTTATCTTCTGGGTTCCCATAAGCATGTAG

mRNA sequence

ATTTGCAGAAGCTTACAATGCAAAACAACTACTCCACAATCTACCATTTTTTTATGTGCAAAAGTAAACGACTTGAATCTCCACCCTGTTTTATTTCTTGCCTAACTCAATTCACATTCAACCTCCAACAGAGACAAAGCATTCAACACCATGAAACAAAGTTTACAGAACCAAACTCAAGATACTGGACCAGGTCCTTACCCAGTTGCCCCACCTATGTGTGATCCAATGCAACACGGTCAGTCTCAGCCATACTCTTCAATTATACCTCCTCAAGGGGAAACCAAGTTTCAAAATGTAGCTCCTCCAAGGGAAACCATGTCTAAAGGTGATGGGTTTTGCAGAGGACTGCTGGTGTTGCTACTGCTGCCTAGATATCTGCTTCTAGGGATGGAGGATCCTTGCAAATGCCACTTTGCGCCAGCACTTCTAGTTCGTCTGACACAAGTTATCTTCTGGGTTCCCATAAGCATGTAG

Coding sequence (CDS)

ATGAAACAAAGTTTACAGAACCAAACTCAAGATACTGGACCAGGTCCTTACCCAGTTGCCCCACCTATGTGTGATCCAATGCAACACGGTCAGTCTCAGCCATACTCTTCAATTATACCTCCTCAAGGGGAAACCAAGTTTCAAAATGTAGCTCCTCCAAGGGAAACCATGTCTAAAGGTGATGGGTTTTGCAGAGGACTGCTGGTGTTGCTACTGCTGCCTAGATATCTGCTTCTAGGGATGGAGGATCCTTGCAAATGCCACTTTGCGCCAGCACTTCTAGTTCGTCTGACACAAGTTATCTTCTGGGTTCCCATAAGCATGTAG

Protein sequence

MKQSLQNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGLLVLLLLPRYLLLGMEDPCKCHFAPALLVRLTQVIFWVPISM
Homology
[Close]
BLAST of Carg09174 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-28
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MKQSLQNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKG 60
          MKQSLQNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETK Q V PPRETMSKG
Sbjct: 1  MKQSLQNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKG 60

Query: 61 DGFCR 66
          DGFCR
Sbjct: 61 DGFCR 65

[Close]
BLAST of Carg09174 vs. NCBI nr
Match: KGN63755.1 (hypothetical protein Csa_1G014520 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 6   QNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCR 65
           Q+   DTGPGPY VAPPMCDPMQHGQ+QPY  I+PPQGETK + V P  +T  +GDGFCR
Sbjct: 62  QHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCR 121

Query: 66  GL 68
           GL
Sbjct: 122 GL 123

[Close]
BLAST of Carg09174 vs. TrEMBL
Match: tr|A0A0A0LPD8|A0A0A0LPD8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 6   QNQTQDTGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCR 65
           Q+   DTGPGPY VAPPMCDPMQHGQ+QPY  I+PPQGETK + V P  +T  +GDGFCR
Sbjct: 62  QHNFIDTGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCR 121

Query: 66  GL 68
           GL
Sbjct: 122 GL 123

The following BLAST results are available for this feature:
BLAST of Carg09174 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022969088.12.3e-2895.38cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi... [more]
KGN63755.12.4e-1769.35hypothetical protein Csa_1G014520 [Cucumis sativus][more]
BLAST of Carg09174 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg09174 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg09174 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPD8|A0A0A0LPD8_CUCSA1.6e-1769.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09174-RACarg09174-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09174Csa1G014520Cucumber (Chinese Long) v2carcuB0620
Carg09174ClCG06G015320Watermelon (Charleston Gray)carwcgB0581
Carg09174CSPI01G03140Wild cucumber (PI 183967)carcpiB0626
Carg09174Cucsa.198460Cucumber (Gy14) v1carcgyB0671
Carg09174CmaCh11G002360Cucurbita maxima (Rimu)carcmaB0830
Carg09174CmoCh11G002400Cucurbita moschata (Rifu)carcmoB0808
Carg09174Lsi06G013760Bottle gourd (USVL1VR-Ls)carlsiB540
Carg09174Cp4.1LG18g07300Cucurbita pepo (Zucchini)carcpeB0845
Carg09174Cp4.1LG04g14490Cucurbita pepo (Zucchini)carcpeB0847
Carg09174CsGy1G003110Cucumber (Gy14) v2carcgybB0592
Carg09174MELO3C029750.2Melon (DHL92) v3.6.1carmedB0606
Carg09174CsaV3_1G003200Cucumber (Chinese Long) v3carcucB0627
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg09174Silver-seed gourdcarcarB538
Carg09174Silver-seed gourdcarcarB416
Carg09174Silver-seed gourdcarcarB459
Carg09174Silver-seed gourdcarcarB496
Carg09174Cucumber (Gy14) v2carcgybB0594
Carg09174Cucumber (Gy14) v2carcgybB0595
Carg09174Cucumber (Gy14) v2carcgybB0598
Carg09174Cucumber (Gy14) v1carcgyB0669
Carg09174Cucumber (Gy14) v1carcgyB0673
Carg09174Cucumber (Gy14) v1carcgyB0676
Carg09174Cucurbita maxima (Rimu)carcmaB0827
Carg09174Cucurbita maxima (Rimu)carcmaB0832
Carg09174Cucurbita maxima (Rimu)carcmaB0833
Carg09174Cucurbita maxima (Rimu)carcmaB0834
Carg09174Cucurbita maxima (Rimu)carcmaB0836
Carg09174Cucurbita moschata (Rifu)carcmoB0805
Carg09174Cucurbita moschata (Rifu)carcmoB0810
Carg09174Cucurbita moschata (Rifu)carcmoB0811
Carg09174Cucurbita moschata (Rifu)carcmoB0812
Carg09174Cucurbita moschata (Rifu)carcmoB0814
Carg09174Cucurbita pepo (Zucchini)carcpeB0840
Carg09174Cucurbita pepo (Zucchini)carcpeB0841
Carg09174Cucurbita pepo (Zucchini)carcpeB0846
Carg09174Wild cucumber (PI 183967)carcpiB0628
Carg09174Wild cucumber (PI 183967)carcpiB0629
Carg09174Wild cucumber (PI 183967)carcpiB0632
Carg09174Cucumber (Chinese Long) v2carcuB0622
Carg09174Cucumber (Chinese Long) v2carcuB0623
Carg09174Cucumber (Chinese Long) v2carcuB0626
Carg09174Cucumber (Chinese Long) v3carcucB0629
Carg09174Cucumber (Chinese Long) v3carcucB0630
Carg09174Cucumber (Chinese Long) v3carcucB0633
Carg09174Bottle gourd (USVL1VR-Ls)carlsiB538
Carg09174Bottle gourd (USVL1VR-Ls)carlsiB539
Carg09174Melon (DHL92) v3.5.1carmeB0597
Carg09174Melon (DHL92) v3.5.1carmeB0598
Carg09174Melon (DHL92) v3.5.1carmeB0599
Carg09174Melon (DHL92) v3.6.1carmedB0604
Carg09174Melon (DHL92) v3.6.1carmedB0605
Carg09174Watermelon (Charleston Gray)carwcgB0579
Carg09174Watermelon (Charleston Gray)carwcgB0580
Carg09174Watermelon (97103) v1carwmB0591
Carg09174Watermelon (97103) v1carwmB0592
Carg09174Watermelon (97103) v1carwmB0594
Carg09174Watermelon (97103) v2carwmbB0621
Carg09174Watermelon (97103) v2carwmbB0623
Carg09174Wax gourdcarwgoB0704
Carg09174Wax gourdcarwgoB0707