Cp4.1LG18g02920 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g02920
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Eukaryotic translation initiation factor 3 subunit K
Location	Cp4.1LG18 : 4422529 .. 4425653 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGACAATATCTGCTAGTGGCAGACTCAGACAGTTATAAACAGTCTCTGAATTAGACATCGAGCGGTGTGCCAGCGAGTACGCTGACATCTAAGAGGGTGGATTGTGAGATCCCATGCCCAGTAATGTTGCCGGGAGAATGATGAGCGGGACAGTGAATTGTGAGATCCCACTTCGAACCGAAAGAGAACTAACCGTTTAGACTAGAACGAGTATCAAATTTGAAACCACTTGGTTTAATGAAGCAATAGAGCGGACGGAAACCCTAAAACAGAGGATTCATCGTCATCCCTAATTGAGGGTTTTGAGTTCAGGTATCTTATCGGCGGTGGAATTCGGTGGCATGGGGAGAGAATTGCAGAAGCAGCCACAGCAAGAGATGGCGTCCGCGGTGGAGCAGTTGCTCGCTGTGAATCCTTACAATCCCGACATCCTTCCCGATCTCGAAAACTACGTAAACGAGCAGGTTTCTTTCCATCTGTATCATTTGTTGTCAGTTCAATTTGTGTAAAATGAAATTATCTCCTCGATCGTGTTTACATTTGTAATCGTACGTCAGAACTGAGAGAACTCTGATCTTATTTTAGTTAGATTGATTGAACGTTTGTGTTACAGGTCTCGTCAGAAACGTACAGCTTAGATGCTAATCTATGCCTTCTTCGCCTCTACCAGGTAACTATACTACTAATCTACTAGCTGCAAGTGGATTTACTTCTTTTACTTCTTATATTGTTCGTCTTGTTTGAAAGTGTCATCTGAGAAACTTGTATTAGTCAAATTTTCAGAAAAAAAAGTTAGGCTCTAAATTGATCGTGGTTCTTGTTTAGGGATAGGTTTGCCATTTAATCCCTTAAGTTTCCATTGATGTTTTATTTATTTATTTTTGGTTCACCGTCATTTACTTTAAGAAAAATTAGAATGCATTCTGGTGCTGATGGCCTTGTAACTTAAACTTTTGATTGTTTAGCCTCTGTGTTTTTCCATCGATTCATATGGTTTATATTCTAGCAAATTAATTGTTGCTTGATTTACAGTTTGAGCCAGAGAGAATGAGTACCCAAATTGTGGCTCGCATCCTGGTCAAGGTGTGTTTTCCTTCTAAATTTCTTTGATCTCACATATTGTGAAGAATTAAATTCAATACGTTCTTCATTCAGCTTAATTTTGAAGTTTCTGTGTGATTTGTGAATAGGCTTTGATGGCAATGCCAGCTCCAGATTTCAGCCTTTGTCTCTTTTTAATTCCAGAACGAGTGGTATGCGTTAACTCTTTCGTATTTCACCAACGCTTTATTTTAAGATGCCTATGCCATTTTAATTCCAGAACTAGTGGTATGTGTTTACTCTACTGTAGTTCACCATCCCTTAAGTTTCATTACTAATTTTATTTAGAGATCTCTATGTCCTTGTAAATTTGATTGATCTGTAGAGTAAACAATTGGGGTGTCATTTCTTGTTTAGAGATCCCTTAAGTTTGATTACTAACATGGCTGCTGAGTATTTTCACGTTATTTGCTGTCATTTCTTGTGCTTTCCAAGCCTGCTCCTTAATGACACATTTTATACATATTATTATCAGCAAATGGAGGATCAATTCAAGACTTTGATTATACTTTCCCACTATTTGGAGGTATGCAAGTTTCTTTACGTTTTTCTTCTTTGAATCCCTTAATTTTAATCTTTAGAAGCATGCTCATGCAAAAGTTGTGACTATTTTGATCTTATTTACGTGTAGACTGGAAAGTTTCGTCAATTCTGGGATGAAGCTTCCAAGAACCGTCACATAGTTGAAGCCGTGCCAGGTACGTAGGAACTATAAGGCAGAAACTTGTTTGTTTGAGCGACTCTATAGAATGCATTTGACTGACCTGAAGAAGAATTGAGATGGGTTTTCAACTTGCTTGCTTTGTTTCTAGACCAAGCCCTGTTTAGCTGTTCCTGATATGAAAATACGATACAGGTTTCGAGAAAGCAATTCAAGCTTATGCAGTCCATGTTCTTTCCTTAACTTATCAAAAGGTTCCTAGATCTGTGCTTGCGGAGGTATGGTTTATAAAATGTCTGCCGTTTTAATGATCTTGGAGTCGGTACTTTAACATCATCGCTGTCTTTTTTCAATCGCGTTTCAGTGTCTATGCGACTTGACAATGATATCCTGCTAATGTTCTGGTTGACAATTTACGTCGTGATTTATCTTTTCTGCCATTGGCTATAACGTAAATCCTACTCCAAACAACCTTGTTTAGTTTCTGTCTGACATGCTGTCAAGGATGCGAACCCGTCAACCCGAATTCATGTTGTTTTGGAGTTCTTGGCTTCGATCAATACTTTTTAATGCTCTATGTTTAATACTTTGTGTGTATCTGCTCCAAACAACCTTGTTTATTCTCTGTCTGACATGTTATCAAGGATGCGAACCCGTCAACCCGAATTCATGTCGTCTTGGAGTTCTTTGCTTCGATCAATACTTTTTAATGCTCTATGTTTAATACTCTGTGTGTATCTACTCCAAACAACCTTGTTTATTTTCTGTCTGACATGTTATCAAGGATGCGAACCTGTCAACCCGAATTCATGTCGTTTTGGAGTTCTTGGCTTCAATCAATACTTTTCGATGCTCTATGTTAATACTCTGTGTGTATTTTAAATCTCATGTGGCATGTTATTACAGGCAATCAACATTGAGGGACTGTCTTTGGACAAATTTCTTGAGCACCAAGTTGCAAACTCTGGTTGGATTCTTGAGAAAGGTCATGGAAAGGGCCAACTTATTGTTATACCACCAAACGAATTCAACCATCCTGAACTGAAGAAGAAATCCTCCGACAGCATTCCCTTGGAACACATCACTCGCATCTTCCCAATTCTTGGCTAACTAACCCGCTCGGCTCACCGGTAACTAATGTCGTTACTTCTATTCAGTTCGTATCTGTTCCCGACGTTTATTTTTTGGGACTACTGTGAAGTATTGTCCAATTTTCCAACTATGCCGTAGAAAGAAGAGATTATTACCCCTTTAAGGCAGTTAAGAGTCTGATGTTTATATTTGTACACTTCAATCATGCCATTTCATAATGGCCATAAGGTCATGATAAGTGTTTTGCTTGAATTTTTATTTTTTATTTTC

mRNA sequence

CGGACAATATCTGCTAGTGGCAGACTCAGACAGTTATAAACAGTCTCTGAATTAGACATCGAGCGGTGTGCCAGCGAGTACGCTGACATCTAAGAGGGTGGATTGTGAGATCCCATGCCCAGTAATGTTGCCGGGAGAATGATGAGCGGGACAGTGAATTGTGAGATCCCACTTCGAACCGAAAGAGAACTAACCGTTTAGACTAGAACGAGTATCAAATTTGAAACCACTTGGTTTAATGAAGCAATAGAGCGGACGGAAACCCTAAAACAGAGGATTCATCGTCATCCCTAATTGAGGGTTTTGAGTTCAGGTATCTTATCGGCGGTGGAATTCGGTGGCATGGGGAGAGAATTGCAGAAGCAGCCACAGCAAGAGATGGCGTCCGCGGTGGAGCAGTTGCTCGCTGTGAATCCTTACAATCCCGACATCCTTCCCGATCTCGAAAACTACGTAAACGAGCAGGTCTCGTCAGAAACGTACAGCTTAGATGCTAATCTATGCCTTCTTCGCCTCTACCAGTTTGAGCCAGAGAGAATGAGTACCCAAATTGTGGCTCGCATCCTGGTCAAGGCTTTGATGGCAATGCCAGCTCCAGATTTCAGCCTTTGTCTCTTTTTAATTCCAGAACGAGTGCAAATGGAGGATCAATTCAAGACTTTGATTATACTTTCCCACTATTTGGAGACTGGAAAGTTTCGTCAATTCTGGGATGAAGCTTCCAAGAACCGTCACATAGTTGAAGCCGTGCCAGGTTTCGAGAAAGCAATTCAAGCTTATGCAGTCCATGTTCTTTCCTTAACTTATCAAAAGGTTCCTAGATCTGTGCTTGCGGAGGCAATCAACATTGAGGGACTGTCTTTGGACAAATTTCTTGAGCACCAAGTTGCAAACTCTGGTTGGATTCTTGAGAAAGGTCATGGAAAGGGCCAACTTATTGTTATACCACCAAACGAATTCAACCATCCTGAACTGAAGAAGAAATCCTCCGACAGCATTCCCTTGGAACACATCACTCGCATCTTCCCAATTCTTGGCTAACTAACCCGCTCGGCTCACCGGTAACTAATGTCGTTACTTCTATTCAGTTCGTATCTGTTCCCGACGTTTATTTTTTGGGACTACTGTGAAGTATTGTCCAATTTTCCAACTATGCCGTAGAAAGAAGAGATTATTACCCCTTTAAGGCAGTTAAGAGTCTGATGTTTATATTTGTACACTTCAATCATGCCATTTCATAATGGCCATAAGGTCATGATAAGTGTTTTGCTTGAATTTTTATTTTTTATTTTC

Coding sequence (CDS)

ATGGGGAGAGAATTGCAGAAGCAGCCACAGCAAGAGATGGCGTCCGCGGTGGAGCAGTTGCTCGCTGTGAATCCTTACAATCCCGACATCCTTCCCGATCTCGAAAACTACGTAAACGAGCAGGTCTCGTCAGAAACGTACAGCTTAGATGCTAATCTATGCCTTCTTCGCCTCTACCAGTTTGAGCCAGAGAGAATGAGTACCCAAATTGTGGCTCGCATCCTGGTCAAGGCTTTGATGGCAATGCCAGCTCCAGATTTCAGCCTTTGTCTCTTTTTAATTCCAGAACGAGTGCAAATGGAGGATCAATTCAAGACTTTGATTATACTTTCCCACTATTTGGAGACTGGAAAGTTTCGTCAATTCTGGGATGAAGCTTCCAAGAACCGTCACATAGTTGAAGCCGTGCCAGGTTTCGAGAAAGCAATTCAAGCTTATGCAGTCCATGTTCTTTCCTTAACTTATCAAAAGGTTCCTAGATCTGTGCTTGCGGAGGCAATCAACATTGAGGGACTGTCTTTGGACAAATTTCTTGAGCACCAAGTTGCAAACTCTGGTTGGATTCTTGAGAAAGGTCATGGAAAGGGCCAACTTATTGTTATACCACCAAACGAATTCAACCATCCTGAACTGAAGAAGAAATCCTCCGACAGCATTCCCTTGGAACACATCACTCGCATCTTCCCAATTCTTGGCTAA

Protein sequence

MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG

Homology

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BLAST of Cp4.1LG18g02920 vs. Swiss-Prot
Match: EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.9e-97
Identity = 175/232 (75.43%), Postives = 208/232 (89.66%), Query Frame = 1


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MG E+Q  PQ++ +  VEQL+A+NP+NP+ILPDLENYVN  V+S+TYSL+ NLCLLRLYQ
Sbjct: 1   MGVEIQS-PQEQSSYTVEQLVALNPFNPEILPDLENYVN--VTSQTYSLEVNLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERM+T IVARILVKALMAMP PDFSLCLFLIPERVQME+QFK+LI+LSHYLETG+F+
Sbjct: 61  FEPERMNTHIVARILVKALMAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQ 120

Query: 121 QFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEA+KNRHI+EAVPGFE+AIQAYA H+LSL+YQKVPRSVLAEA+N++G SLDKF+E 
Sbjct: 121 QFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQ 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QV NSGWI+EK   +G  IV+P NEFNHPELKK + +++PLEHI RIFPILG
Sbjct: 181 QVTNSGWIVEK---EGGSIVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226

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BLAST of Cp4.1LG18g02920 vs. Swiss-Prot
Match: EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.7e-97
Identity = 167/215 (77.67%), Postives = 199/215 (92.56%), Query Frame = 1


Query: 17  VEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQIVARILV 76
           VE+L+AVNPYNPDIL DLE +VN+QVS++TY+LDANL LLRLYQFEPER+S QIV+RIL+
Sbjct: 12  VEELVAVNPYNPDILNDLEGFVNDQVSNQTYNLDANLSLLRLYQFEPERLSVQIVSRILI 71

Query: 77  KALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEASKNRHIVEAV 136
           KALMAMP PDFSLCLFLIPE VQME+QFKTLI+LSHYLET +FRQFWDEASKNR+I++ V
Sbjct: 72  KALMAMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVV 131

Query: 137 PGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWILEKGHGKG 196
           PGFE+AIQ+YA+HVLSLTYQKVPR VLAEAINIEGL+LDKFLEH +ANSGW++EKG  + 
Sbjct: 132 PGFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIEKG-ARS 191

Query: 197 QLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPIL 232
           QLIV+P NEFNHPELKK +++++P EH+TRIFP+L
Sbjct: 192 QLIVLPRNEFNHPELKKNTAETVPFEHVTRIFPVL 225

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BLAST of Cp4.1LG18g02920 vs. Swiss-Prot
Match: EIF3K_BOVIN (Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus GN=EIF3K PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.6e-28
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 1


Query: 10  QQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQ 69
           +Q  A+  + L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T 
Sbjct: 5   EQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTT 64

Query: 70  IVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEASKN 129
           + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    +N
Sbjct: 65  VTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN 124

Query: 130 RHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWIL 189
             ++E + GFE +++ +  HV+ +TYQ + R +LAE +   G   D  L+  ++  GW  
Sbjct: 125 MDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDSQLKVWMSKYGWSA 184

Query: 190 EKGHGKGQLIVIPPNEFNHPE--LKKKSSDSI 220
           ++    GQ+ +    E   P+  ++K   DS+
Sbjct: 185 DE---SGQIFICSQEESIKPKNIVEKIDFDSV 210

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BLAST of Cp4.1LG18g02920 vs. Swiss-Prot
Match: EIF3K_MOUSE (Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus GN=Eif3k PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.3e-28
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 1


Query: 10  QQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQ 69
           +Q  A+  + L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T 
Sbjct: 5   EQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTT 64

Query: 70  IVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEASKN 129
           + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    +N
Sbjct: 65  VTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN 124

Query: 130 RHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWIL 189
             ++E + GFE +++ +  HV+ +TYQ + R +LAE +   G   D  L+  ++  GW  
Sbjct: 125 MDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDNQLKVWMSKYGWSA 184

Query: 190 EKGHGKGQLIVIPPNEFNHPE--LKKKSSDSI 220
           ++    GQ+ +    E   P+  ++K   DS+
Sbjct: 185 DE---SGQVFICSQEESIKPKNIVEKIDFDSV 210

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BLAST of Cp4.1LG18g02920 vs. Swiss-Prot
Match: EIF3K_HUMAN (Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.3e-28
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 1


Query: 10  QQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQ 69
           +Q  A+  + L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T 
Sbjct: 5   EQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTT 64

Query: 70  IVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEASKN 129
           + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    +N
Sbjct: 65  VTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN 124

Query: 130 RHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWIL 189
             ++E + GFE +++ +  HV+ +TYQ + R +LAE +   G   D  L+  ++  GW  
Sbjct: 125 MDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSDSQLKVWMSKYGWSA 184

Query: 190 EKGHGKGQLIVIPPNEFNHPE--LKKKSSDSI 220
           ++    GQ+ +    E   P+  ++K   DS+
Sbjct: 185 DE---SGQIFICSQEESIKPKNIVEKIDFDSV 210

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BLAST of Cp4.1LG18g02920 vs. TrEMBL
Match: A0A0A0LZ54_CUCSA (Eukaryotic translation initiation factor 3 subunit K OS=Cucumis sativus GN=Csa_1G597810 PE=3 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 5.5e-123
Identity = 227/232 (97.84%), Postives = 230/232 (99.14%), Query Frame = 1


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEA+KNRHIVEAVPGFE+AIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QVANSGW LEKG GKGQLIVIPPNEFNHPELKKKSSDSIPL+HITRIFPILG
Sbjct: 181 QVANSGWTLEKG-GKGQLIVIPPNEFNHPELKKKSSDSIPLDHITRIFPILG 231

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BLAST of Cp4.1LG18g02920 vs. TrEMBL
Match: A0A061GKY7_THECC (Eukaryotic translation initiation factor 3 subunit K OS=Theobroma cacao GN=TCM_037462 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 3.0e-113
Identity = 203/235 (86.38%), Postives = 223/235 (94.89%), Query Frame = 1


Query: 1   MGREL---QKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLR 60
           MGRE    Q+Q QQ+++  VEQL+AVNPYNPDILPDLENYVNEQVSS+TYSLDANLCLLR
Sbjct: 1   MGRETPKQQQQQQQQVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLR 60

Query: 61  LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETG 120
           LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQME+QFKTLI+LSHYLETG
Sbjct: 61  LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETG 120

Query: 121 KFRQFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKF 180
           +FRQFWDEA+K+RHIVEAVPGFE+AIQ YA+HVLSLTYQK+PR VLAEAINIEGLSLDKF
Sbjct: 121 RFRQFWDEAAKSRHIVEAVPGFEQAIQTYAIHVLSLTYQKIPRPVLAEAINIEGLSLDKF 180

Query: 181 LEHQVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           LEHQ ANSGWILEKGHG+GQLI++P NEFNHPELKK ++DS+PLEHITRIFPILG
Sbjct: 181 LEHQAANSGWILEKGHGRGQLIILPRNEFNHPELKKSAADSVPLEHITRIFPILG 235

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BLAST of Cp4.1LG18g02920 vs. TrEMBL
Match: A0A0D2RTQ2_GOSRA (Eukaryotic translation initiation factor 3 subunit K OS=Gossypium raimondii GN=B456_009G038100 PE=3 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 8.7e-113
Identity = 203/230 (88.26%), Postives = 220/230 (95.65%), Query Frame = 1


Query: 3   RELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFE 62
           RE  KQ QQ+++  VEQL+AVNPYNPDILPDLENYVNEQVSS+TYSLDANLCLLRLYQFE
Sbjct: 5   RETPKQ-QQQVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLRLYQFE 64

Query: 63  PERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQF 122
           PERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQME+QFKTLI+LSHYLETG+FRQF
Sbjct: 65  PERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQF 124

Query: 123 WDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQV 182
           WDEA+KNRHIVEAVPGFE+AIQ YA+HVLSLTYQK+PR VLAEAINIEGLSLDKFLEHQ 
Sbjct: 125 WDEAAKNRHIVEAVPGFEQAIQTYAIHVLSLTYQKIPRPVLAEAINIEGLSLDKFLEHQA 184

Query: 183 ANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           ANSGWILEKGHG+GQLIV+P NEFNHPELKK ++DS+PLEHITRIFPILG
Sbjct: 185 ANSGWILEKGHGRGQLIVLPRNEFNHPELKKSAADSVPLEHITRIFPILG 233

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BLAST of Cp4.1LG18g02920 vs. TrEMBL
Match: A0A067KCM1_JATCU (Eukaryotic translation initiation factor 3 subunit K OS=Jatropha curcas GN=JCGZ_07547 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 1.9e-112
Identity = 204/235 (86.81%), Postives = 223/235 (94.89%), Query Frame = 1


Query: 1   MGRELQKQP---QQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLR 60
           MGRE + Q    QQ+++  VEQL+AVNPYNPDILPDLENYVNEQVSS+TYSLDANLCLLR
Sbjct: 1   MGREREPQKLQQQQQVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLR 60

Query: 61  LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETG 120
           LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQME+QFKTLI+LSHYLETG
Sbjct: 61  LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETG 120

Query: 121 KFRQFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKF 180
           +FRQFWDEA+K+RHIVEAVPGFE+AIQAYA+H+LSLTYQKVPRSVLAEAINIEGLSLDKF
Sbjct: 121 RFRQFWDEAAKSRHIVEAVPGFEQAIQAYAIHLLSLTYQKVPRSVLAEAINIEGLSLDKF 180

Query: 181 LEHQVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           LE QVAN GWI+EKGHG+GQLIV+P NEFNHPELKK ++DSIPLEHITRIFPILG
Sbjct: 181 LEQQVANGGWIIEKGHGRGQLIVLPGNEFNHPELKKNAADSIPLEHITRIFPILG 235

[Close]

BLAST of Cp4.1LG18g02920 vs. TrEMBL
Match: M5VR02_PRUPE (Eukaryotic translation initiation factor 3 subunit K OS=Prunus persica GN=PRUPE_ppa010881mg PE=3 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 1.6e-111
Identity = 198/232 (85.34%), Postives = 219/232 (94.40%), Query Frame = 1


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRE+ +Q QQ++A AVEQLLAVNPYNPD+L DLENYVNEQVSS+TY+LDANLCLLR+YQ
Sbjct: 1   MGREVPQQQQQQVALAVEQLLAVNPYNPDMLSDLENYVNEQVSSQTYNLDANLCLLRIYQ 60

Query: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEP+RMSTQIVARILVKALMAMP+PDF LCLFLIPERVQME+QFKTL +LSHYLETG+F 
Sbjct: 61  FEPDRMSTQIVARILVKALMAMPSPDFGLCLFLIPERVQMEEQFKTLTVLSHYLETGRFS 120

Query: 121 QFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEASKNRHIVEAVPGFE+AIQAYA+HVLSLTYQ+VPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEASKNRHIVEAVPGFEQAIQAYAIHVLSLTYQRVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
            VAN+GWILEKGHG+GQLIV+P NEFNHPELKK + D IPLEH+ RIFPILG
Sbjct: 181 HVANNGWILEKGHGRGQLIVLPRNEFNHPELKKSTDDGIPLEHVARIFPILG 232

[Close]

BLAST of Cp4.1LG18g02920 vs. TAIR10
Match: AT4G33250.1 (AT4G33250.1 eukaryotic translation initiation factor 3K)

HSP 1 Score: 356.7 bits (914), Expect = 1.1e-98
Identity = 175/232 (75.43%), Postives = 208/232 (89.66%), Query Frame = 1


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MG E+Q  PQ++ +  VEQL+A+NP+NP+ILPDLENYVN  V+S+TYSL+ NLCLLRLYQ
Sbjct: 1   MGVEIQS-PQEQSSYTVEQLVALNPFNPEILPDLENYVN--VTSQTYSLEVNLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERM+T IVARILVKALMAMP PDFSLCLFLIPERVQME+QFK+LI+LSHYLETG+F+
Sbjct: 61  FEPERMNTHIVARILVKALMAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQ 120

Query: 121 QFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEA+KNRHI+EAVPGFE+AIQAYA H+LSL+YQKVPRSVLAEA+N++G SLDKF+E 
Sbjct: 121 QFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQ 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QV NSGWI+EK   +G  IV+P NEFNHPELKK + +++PLEHI RIFPILG
Sbjct: 181 QVTNSGWIVEK---EGGSIVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226

[Close]

BLAST of Cp4.1LG18g02920 vs. NCBI nr
Match: gi|659100187|ref|XP_008450972.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit K [Cucumis melo])

HSP 1 Score: 450.3 bits (1157), Expect = 2.1e-123
Identity = 228/232 (98.28%), Postives = 231/232 (99.57%), Query Frame = 1


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEA+KNRHIVEAVPGFE+AIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QVANSGWILEKG GKGQLIVIPPNEFNHPELKKKSSDSIPL+HITRIFPILG
Sbjct: 181 QVANSGWILEKG-GKGQLIVIPPNEFNHPELKKKSSDSIPLDHITRIFPILG 231

[Close]

BLAST of Cp4.1LG18g02920 vs. NCBI nr
Match: gi|449452616|ref|XP_004144055.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit K [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 7.8e-123
Identity = 227/232 (97.84%), Postives = 230/232 (99.14%), Query Frame = 1


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEA+KNRHIVEAVPGFE+AIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QVANSGW LEKG GKGQLIVIPPNEFNHPELKKKSSDSIPL+HITRIFPILG
Sbjct: 181 QVANSGWTLEKG-GKGQLIVIPPNEFNHPELKKKSSDSIPLDHITRIFPILG 231

[Close]

BLAST of Cp4.1LG18g02920 vs. NCBI nr
Match: gi|590574922|ref|XP_007012542.1| (Eukaryotic translation initiation factor 3 subunit K isoform 1 [Theobroma cacao])

HSP 1 Score: 416.0 bits (1068), Expect = 4.3e-113
Identity = 203/235 (86.38%), Postives = 223/235 (94.89%), Query Frame = 1


Query: 1   MGREL---QKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLR 60
           MGRE    Q+Q QQ+++  VEQL+AVNPYNPDILPDLENYVNEQVSS+TYSLDANLCLLR
Sbjct: 1   MGRETPKQQQQQQQQVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLR 60

Query: 61  LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETG 120
           LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQME+QFKTLI+LSHYLETG
Sbjct: 61  LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETG 120

Query: 121 KFRQFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKF 180
           +FRQFWDEA+K+RHIVEAVPGFE+AIQ YA+HVLSLTYQK+PR VLAEAINIEGLSLDKF
Sbjct: 121 RFRQFWDEAAKSRHIVEAVPGFEQAIQTYAIHVLSLTYQKIPRPVLAEAINIEGLSLDKF 180

Query: 181 LEHQVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           LEHQ ANSGWILEKGHG+GQLI++P NEFNHPELKK ++DS+PLEHITRIFPILG
Sbjct: 181 LEHQAANSGWILEKGHGRGQLIILPRNEFNHPELKKSAADSVPLEHITRIFPILG 235

[Close]

BLAST of Cp4.1LG18g02920 vs. NCBI nr
Match: gi|823227383|ref|XP_012446517.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii])

HSP 1 Score: 414.5 bits (1064), Expect = 1.3e-112
Identity = 203/230 (88.26%), Postives = 220/230 (95.65%), Query Frame = 1


Query: 3   RELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFE 62
           RE  KQ QQ+++  VEQL+AVNPYNPDILPDLENYVNEQVSS+TYSLDANLCLLRLYQFE
Sbjct: 5   RETPKQ-QQQVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLRLYQFE 64

Query: 63  PERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQF 122
           PERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQME+QFKTLI+LSHYLETG+FRQF
Sbjct: 65  PERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQF 124

Query: 123 WDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQV 182
           WDEA+KNRHIVEAVPGFE+AIQ YA+HVLSLTYQK+PR VLAEAINIEGLSLDKFLEHQ 
Sbjct: 125 WDEAAKNRHIVEAVPGFEQAIQTYAIHVLSLTYQKIPRPVLAEAINIEGLSLDKFLEHQA 184

Query: 183 ANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           ANSGWILEKGHG+GQLIV+P NEFNHPELKK ++DS+PLEHITRIFPILG
Sbjct: 185 ANSGWILEKGHGRGQLIVLPRNEFNHPELKKSAADSVPLEHITRIFPILG 233

[Close]

BLAST of Cp4.1LG18g02920 vs. NCBI nr
Match: gi|802628621|ref|XP_012077127.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit K [Jatropha curcas])

HSP 1 Score: 413.3 bits (1061), Expect = 2.8e-112
Identity = 204/235 (86.81%), Postives = 223/235 (94.89%), Query Frame = 1


Query: 1   MGRELQKQP---QQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLR 60
           MGRE + Q    QQ+++  VEQL+AVNPYNPDILPDLENYVNEQVSS+TYSLDANLCLLR
Sbjct: 1   MGREREPQKLQQQQQVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLR 60

Query: 61  LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETG 120
           LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQME+QFKTLI+LSHYLETG
Sbjct: 61  LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETG 120

Query: 121 KFRQFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKF 180
           +FRQFWDEA+K+RHIVEAVPGFE+AIQAYA+H+LSLTYQKVPRSVLAEAINIEGLSLDKF
Sbjct: 121 RFRQFWDEAAKSRHIVEAVPGFEQAIQAYAIHLLSLTYQKVPRSVLAEAINIEGLSLDKF 180

Query: 181 LEHQVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           LE QVAN GWI+EKGHG+GQLIV+P NEFNHPELKK ++DSIPLEHITRIFPILG
Sbjct: 181 LEQQVANGGWIIEKGHGRGQLIVLPGNEFNHPELKKNAADSIPLEHITRIFPILG 235

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g02920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EIF3K_ARATH	1.9e-97	75.43	Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=...	[more]
EIF3K_ORYSJ	5.7e-97	77.67	Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japo...	[more]
EIF3K_BOVIN	5.6e-28	33.49	Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus GN=EIF3K PE=2...	[more]
EIF3K_MOUSE	7.3e-28	33.49	Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus GN=Eif3k PE...	[more]
EIF3K_HUMAN	7.3e-28	33.49	Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE...	[more]

BLAST of Cp4.1LG18g02920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ54_CUCSA	5.5e-123	97.84	Eukaryotic translation initiation factor 3 subunit K OS=Cucumis sativus GN=Csa_1...	[more]
A0A061GKY7_THECC	3.0e-113	86.38	Eukaryotic translation initiation factor 3 subunit K OS=Theobroma cacao GN=TCM_0...	[more]
A0A0D2RTQ2_GOSRA	8.7e-113	88.26	Eukaryotic translation initiation factor 3 subunit K OS=Gossypium raimondii GN=B...	[more]
A0A067KCM1_JATCU	1.9e-112	86.81	Eukaryotic translation initiation factor 3 subunit K OS=Jatropha curcas GN=JCGZ_...	[more]
M5VR02_PRUPE	1.6e-111	85.34	Eukaryotic translation initiation factor 3 subunit K OS=Prunus persica GN=PRUPE_...	[more]

BLAST of Cp4.1LG18g02920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33250.1	1.1e-98	75.43	eukaryotic translation initiation factor 3K	[more]

BLAST of Cp4.1LG18g02920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659100187\|ref\|XP_008450972.1\|	2.1e-123	98.28	PREDICTED: eukaryotic translation initiation factor 3 subunit K [Cucumis melo]	[more]
gi\|449452616\|ref\|XP_004144055.1\|	7.8e-123	97.84	PREDICTED: eukaryotic translation initiation factor 3 subunit K [Cucumis sativus...	[more]
gi\|590574922\|ref\|XP_007012542.1\|	4.3e-113	86.38	Eukaryotic translation initiation factor 3 subunit K isoform 1 [Theobroma cacao]	[more]
gi\|823227383\|ref\|XP_012446517.1\|	1.3e-112	88.26	PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimo...	[more]
gi\|802628621\|ref\|XP_012077127.1\|	2.8e-112	86.81	PREDICTED: eukaryotic translation initiation factor 3 subunit K [Jatropha curcas...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0043022	ribosome binding
GO:0003743	translation initiation factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006446	regulation of translational initiation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005852	eukaryotic translation initiation factor 3 complex
GO:0005737	cytoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR016020	Transl_init_fac_sub12_N_euk
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR009374	eIF3k

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001731	formation of translation preinitiation complex
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0001732	formation of cytoplasmic translation initiation complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g02920.1	Cp4.1LG18g02920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009374	Eukaryotic translation initiation factor 3 subunit K	HAMAP	MF_03010	eIF3k	coord: 8..232 score: 24
IPR009374	Eukaryotic translation initiation factor 3 subunit K	PANTHER	PTHR13022	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11	coord: 1..231 score: 3.0E
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	G3DSA:1.10.10.10		coord: 128..230 score: 6.9
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 137..229 score: 1.22
IPR016020	Translation initiation factor 3, subunit 12, N-terminal, eukaryotic	GENE3D	G3DSA:1.25.40.250		coord: 8..125 score: 4.7
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 10..135 score: 3.74
None	No IPR available	PANTHER	PTHR13022:SF0	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K	coord: 1..231 score: 3.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g02920	Cucsa.142070	Cucumber (Gy14) v1	cgycpeB0383
Cp4.1LG18g02920	CmaCh10G007950	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g02920	CmaCh11G007610	Cucurbita maxima (Rimu)	cmacpeB132
Cp4.1LG18g02920	CmoCh11G007700	Cucurbita moschata (Rifu)	cmocpeB108
Cp4.1LG18g02920	CmoCh10G008220	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g02920	Cla011129	Watermelon (97103) v1	cpewmB349
Cp4.1LG18g02920	Csa1G597810	Cucumber (Chinese Long) v2	cpecuB362
Cp4.1LG18g02920	MELO3C015553	Melon (DHL92) v3.5.1	cpemeB335
Cp4.1LG18g02920	ClCG03G014750	Watermelon (Charleston Gray)	cpewcgB321
Cp4.1LG18g02920	CSPI01G29020	Wild cucumber (PI 183967)	cpecpiB362
Cp4.1LG18g02920	Lsi06G003700	Bottle gourd (USVL1VR-Ls)	cpelsiB305
Cp4.1LG18g02920	MELO3C015553.2	Melon (DHL92) v3.6.1	cpemedB393
Cp4.1LG18g02920	CsaV3_1G041410	Cucumber (Chinese Long) v3	cpecucB0443
Cp4.1LG18g02920	Bhi02G001474	Wax gourd	cpewgoB0458
Cp4.1LG18g02920	CsGy1G028240	Cucumber (Gy14) v2	cgybcpeB054
Cp4.1LG18g02920	Carg25201	Silver-seed gourd	carcpeB0706
Cp4.1LG18g02920	Carg12930	Silver-seed gourd	carcpeB0138

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG18g02920	Cp4.1LG04g11270	Cucurbita pepo (Zucchini)	cpecpeB360

The following block(s) are covering this gene:

None