Carg25201 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25201
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Eukaryotic translation initiation factor 3 subunit K
Location	Cucurbita_argyrosperma_scaffold_333 : 97791 .. 100929 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCTAAAATAGAGGATTCATCAACGTCCCCAGTCGTGGGTTTCGAGCGGGAACCTCAGCACGAGTTGGAAGTGTATACTGCAACGAAGAGAAGCTTATCCGGATACCTAATCGGCGTCGGAATCCGGTGGTATGGGGAGAGAATTGCAGAAGCAGCCACAGCAAGAGATGGCGTCTGCGGTGGAGCAGTTGCTCGCTGTGAATCCTTACAATCCTGATATCCTTCCTGATCTCGAAAACTACGTAAATGAGCAGGTTTCTTTCTATCTCTGTCTTTTGTTTTCAGTTCGATTTGTAAATTTTTATCATCTTCTCGATTGTCTTTAAATTTATAATTATACGTTTGGATTGAGAAATCTATTGTCTTATTCTTGTTGGATTGAATGTTTGTGTTCCAGGTCTCGTCAGAAACCTACAGTTTAGATGCTAATTTATGCCTGCTTCGCCTCTACCAGGTACTTGTTATTTACTAGATGTAAATTGTTTGCTTTTGTTGTTTCTTATATTCTTGGCCCTGTTTGAATGTGCCTTCAGAAAACTTCTTATTACTGCTTTGGATAGATCTTCGATTACTTCTTATATAATGCATTGGACGTGGACCTTGAAGCTTTTGATTTTTAAACCTGTGTTTTTCTTTCATTCACATGTTTAATCTTCTAGCAATTCGTTATTGTTCGATTTACAGTTTGAGCCCGAAAGAATGAGTACACAAATTGTGGCTCGCATCCTGGTCAAGGTATGTTTTTCTTTGAAATTTCTTTGCATATTGTGAAGAATGTAATTCATTTACTTGTTCATTAATTTTAATTTTGAGGGCTTTGTGCGAGGTGTGAATAGGCTCTGATGGCAATTCCAGCTCCAGATTTCAGCCTGTGTCTCTTTTTAATTCCAGAACGAGTGGTATGTGTTAACTCTTTTGTACTTCAACAACCTTTAAGTTTCATTAATGTTGTTTCGTTTCAAGATGTCTATGTCCTTGTCAATTTGATTGATCTGCAAGAAGAAACGATTAGGTTGCTCATTTTCTTAACAAATTGAATTGTGCTGTGTACACTACGTTGTTCTTTTATGAATTTTTTAAGACAAAATTAAGCTTTCATTAAGATCAATGAAAGCATGCCGAACAACGTTATCCTAGGAGGAGCTAGAAACCTATACTAGGGTAAAACCACATCAAATTTAATGGCCTCAATTTTTAACTATTATTCCAAGGTCAATGTCTTGAGAGACTAACTGAAGAAGTAATCCTAAGGAAATTTTTTAGAGTTGATTTTATTTCGAACGAAAACACTGCCACCGAGCATGTTTACACTTTAGCTCATGCTTTTTCTTATTCTTTTCCATCTTGCCCCTTCAAGACCCCTTTTTAATATGTTGTTACAGCAAATGGAGGATCAATTCAAGACTCTGATTATACTTTCCCACTATTTGGAGGTATGCAATTTTTTTTTTTTTTTTTTTTTTTACGTTTTTCATTAGCCCTTAAATTTTAGTTTTTTGAGAGCATTCTCGTTCGAAATTTATGACTACTTTGATCTTATCCATGTGTAGACTGGAAAGTTCCGTCAATTTTGGGATGAAGCTGCGAAGAACCGCCACATAGTTGAAGCTGTGCCAGGTACTTGGGAACTGCAAAGCAGAAACTTGTTTGTTTGCAGTCTTCGGTACTATCTTGATAGTCTTTAGGATATATTTATAGTTTCATAACCACGAGTGAAAAAAATTCTCTCAAGACGTATTGAGGAGTTCGGAGGGAAGTTTCCCGGGATGCCTTGGTTCGAGCCTCCATGTGGTAAACCTTATAAGTGAATATCTTTGTCTCACTTGTTATGTTTCCTAGAGTAGTTGGCTTTATGTTGCACAAAGTCTCCCTGCAGTATTGGAGTGGGCCACAGCTATACAAAAAATAAATGATTTGGGATTTGCAGACCCATTTTATATATAGATCACCCTCTGTTTGGCTGTTCCTAATATGAACATATGATGCAGGTTTTGAGCAAGCTATTCAAGCTTATGCAGTCCATGTTCTTTCCTTAACTTATCAAAAGGTTCCTAGATCTGTGCTTGCTGAGGTATGAATAAATAAATAAAACTGGTATTGCTGTAATTTTCAATAATGTTCACTTGTATGTGGCTTGCCGTTGCTGCACTCCTAATGTTTCGGTTGGTGATCGTTGTCATAATTTTTGTTCTCTGCTGTTAACTATACCATAAATCCTATTCCAAGTAACCTTGCATTGTCTATTTCCTGTCTGACATGCTATAGAGGATGCCTACCCATCACCCCAATTCTTGTCGTTTTCGAGTTTTTGCTTCAATCGATACTTTCTAGCACTATATGTTCAATATCCCGTGTTAATATTCTAAATTTTACGTCGGCATGTTCCAGGCAATCAATATTGAGGGCTTATCTTTGGACAAATTTCTTGAGCACCAAGTTGCAAACTCTGGTTGGATTCTTGAGAAAGGTCACGGGAAGGGCCAACTTATTGTTATACCACCAAACGAATTCAACCATCCTGAACTGAAGAAGAAATCCTCCGACAGCATTCCCTTGGAACACATTACTCGCATCTTTCCAATTCTCGGCTAATTAACTCACGTACCGGTAACTAATGTCGTTACTTTTGTTCATTTCATATTTGTTCTTGTCGTTTCATTTGGGGATTACTGTGAGGTTGCTTCTATATTTTCGTCCAATTTTCCAACTAATGACAGAGGAAGAATAGATTACCCTTTAGGGTAGTTAGTCTGATTTTGATGTTTATATCTGTACTTTAATCATGCCATTTCATAACGGTCATAATATCATAGAAATTGCCAAGGCAAGGTGCCCTTATATGGTGGCGCATAAGGTGGCACGCCTAATTTTGAAGCGTTTCGCTTTGAATAATTATGATCTTTTTGGGCGGTGTAGACGTGAGTTCATATCATATGTGCATGATTGACATGTCTTGTTTTGTTAAGTACTCGGGGAGGTGTAGAAGTGTTTTTTTTTTTCATCGGGAAGTTGATAATGTTTTCTTGAAGTTTGAGGGATGTCGATAACTCTTTAAATGCACATTTAATTTAGTTTCAATTCCTTTGAGTATCTTTGAGAATGAATTTGAAATAGTTTGAATTACTTTTGTCATATT

mRNA sequence

AAACCCTAAAATAGAGGATTCATCAACGTCCCCAGTCGTGGGTTTCGAGCGGGAACCTCAGCACGAGTTGGAAGTGTATACTGCAACGAAGAGAAGCTTATCCGGATACCTAATCGGCGTCGGAATCCGGTGGTATGGGGAGAGAATTGCAGAAGCAGCCACAGCAAGAGATGGCGTCTGCGGTGGAGCAGTTGCTCGCTGTGAATCCTTACAATCCTGATATCCTTCCTGATCTCGAAAACTACGTAAATGAGCAGGTCTCGTCAGAAACCTACAGTTTAGATGCTAATTTATGCCTGCTTCGCCTCTACCAGTTTGAGCCCGAAAGAATGAGTACACAAATTGTGGCTCGCATCCTGGTCAAGGCTCTGATGGCAATTCCAGCTCCAGATTTCAGCCTGTGTCTCTTTTTAATTCCAGAACGAGTGCAAATGGAGGATCAATTCAAGACTCTGATTATACTTTCCCACTATTTGGAGACTGGAAAGTTCCGTCAATTTTGGGATGAAGCTGCGAAGAACCGCCACATAGTTGAAGCTGTGCCAGGTTTTGAGCAAGCTATTCAAGCTTATGCAGTCCATGTTCTTTCCTTAACTTATCAAAAGGTTCCTAGATCTGTGCTTGCTGAGGCAATCAATATTGAGGGCTTATCTTTGGACAAATTTCTTGAGCACCAAGTTGCAAACTCTGGTTGGATTCTTGAGAAAGGTCACGGGAAGGGCCAACTTATTGTTATACCACCAAACGAATTCAACCATCCTGAACTGAAGAAGAAATCCTCCGACAGCATTCCCTTGGAACACATTACTCGCATCTTTCCAATTCTCGGCTAATTAACTCACGTACCGGTAACTAATGTCGTTACTTTTGTTCATTTCATATTTGTTCTTGTCGTTTCATTTGGGGATTACTGTGAGGTTGCTTCTATATTTTCGTCCAATTTTCCAACTAATGACAGAGGAAGAATAGATTACCCTTTAGGGTAGTTAGTCTGATTTTGATGTTTATATCTGTACTTTAATCATGCCATTTCATAACGGTCATAATATCATAGAAATTGCCAAGGCAAGGTGCCCTTATATGGTGGCGCATAAGGTGGCACGCCTAATTTTGAAGCGTTTCGCTTTGAATAATTATGATCTTTTTGGGCGGTGTAGACGTGAGTTCATATCATATGTGCATGATTGACATGTCTTGTTTTGTTAAGTACTCGGGGAGGTGTAGAAGTGTTTTTTTTTTTCATCGGGAAGTTGATAATGTTTTCTTGAAGTTTGAGGGATGTCGATAACTCTTTAAATGCACATTTAATTTAGTTTCAATTCCTTTGAGTATCTTTGAGAATGAATTTGAAATAGTTTGAATTACTTTTGTCATATT

Coding sequence (CDS)

ATGGGGAGAGAATTGCAGAAGCAGCCACAGCAAGAGATGGCGTCTGCGGTGGAGCAGTTGCTCGCTGTGAATCCTTACAATCCTGATATCCTTCCTGATCTCGAAAACTACGTAAATGAGCAGGTCTCGTCAGAAACCTACAGTTTAGATGCTAATTTATGCCTGCTTCGCCTCTACCAGTTTGAGCCCGAAAGAATGAGTACACAAATTGTGGCTCGCATCCTGGTCAAGGCTCTGATGGCAATTCCAGCTCCAGATTTCAGCCTGTGTCTCTTTTTAATTCCAGAACGAGTGCAAATGGAGGATCAATTCAAGACTCTGATTATACTTTCCCACTATTTGGAGACTGGAAAGTTCCGTCAATTTTGGGATGAAGCTGCGAAGAACCGCCACATAGTTGAAGCTGTGCCAGGTTTTGAGCAAGCTATTCAAGCTTATGCAGTCCATGTTCTTTCCTTAACTTATCAAAAGGTTCCTAGATCTGTGCTTGCTGAGGCAATCAATATTGAGGGCTTATCTTTGGACAAATTTCTTGAGCACCAAGTTGCAAACTCTGGTTGGATTCTTGAGAAAGGTCACGGGAAGGGCCAACTTATTGTTATACCACCAAACGAATTCAACCATCCTGAACTGAAGAAGAAATCCTCCGACAGCATTCCCTTGGAACACATTACTCGCATCTTTCCAATTCTCGGCTAA

Protein sequence

MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG

Homology

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BLAST of Carg25201 vs. NCBI nr
Match: XP_023530808.1 (eukaryotic translation initiation factor 3 subunit K-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 461.5 bits (1186), Expect = 1.7e-126
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG
Sbjct: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 232

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BLAST of Carg25201 vs. NCBI nr
Match: XP_022147729.1 (eukaryotic translation initiation factor 3 subunit K [Momordica charantia])

HSP 1 Score: 458.4 bits (1178), Expect = 1.5e-125
Identity = 230/232 (99.14%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALM +PAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMEMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG
Sbjct: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 232

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BLAST of Carg25201 vs. NCBI nr
Match: XP_022968162.1 (eukaryotic translation initiation factor 3 subunit K-like [Cucurbita maxima])

HSP 1 Score: 457.6 bits (1176), Expect = 2.5e-125
Identity = 230/231 (99.57%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPIL 232
           QVANSGWILEKGHGKGQLIV+PPNEFNHPELKKKSSDSIPLEHITRIFPIL
Sbjct: 181 QVANSGWILEKGHGKGQLIVMPPNEFNHPELKKKSSDSIPLEHITRIFPIL 231

[Close]

BLAST of Carg25201 vs. NCBI nr
Match: XP_023516999.1 (eukaryotic translation initiation factor 3 subunit K-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457.6 bits (1176), Expect = 2.5e-125
Identity = 229/232 (98.71%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALMA+PAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEA+KNRHIVEAVPGFE+AIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEASKNRHIVEAVPGFEKAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG
Sbjct: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 232

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BLAST of Carg25201 vs. NCBI nr
Match: XP_022933863.1 (eukaryotic translation initiation factor 3 subunit K-like [Cucurbita moschata])

HSP 1 Score: 456.4 bits (1173), Expect = 5.6e-125
Identity = 232/234 (99.15%), Postives = 232/234 (99.15%), Query Frame = 0


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILE--KGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QVANSGWILE  KGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG
Sbjct: 181 QVANSGWILEKGKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 234

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BLAST of Carg25201 vs. TAIR10
Match: AT4G33250.1 (eukaryotic translation initiation factor 3K)

HSP 1 Score: 357.5 bits (916), Expect = 6.4e-99
Identity = 176/232 (75.86%), Postives = 208/232 (89.66%), Query Frame = 0


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MG E+Q  PQ++ +  VEQL+A+NP+NP+ILPDLENYVN  V+S+TYSL+ NLCLLRLYQ
Sbjct: 1   MGVEIQ-SPQEQSSYTVEQLVALNPFNPEILPDLENYVN--VTSQTYSLEVNLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERM+T IVARILVKALMA+P PDFSLCLFLIPERVQME+QFK+LI+LSHYLETG+F+
Sbjct: 61  FEPERMNTHIVARILVKALMAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQ 120

Query: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEAAKNRHI+EAVPGFEQAIQAYA H+LSL+YQKVPRSVLAEA+N++G SLDKF+E 
Sbjct: 121 QFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQ 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QV NSGWI+EK   +G  IV+P NEFNHPELKK + +++PLEHI RIFPILG
Sbjct: 181 QVTNSGWIVEK---EGGSIVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226

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BLAST of Carg25201 vs. Swiss-Prot
Match: sp|Q9SZA3|EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana OX=3702 GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.2e-97
Identity = 176/232 (75.86%), Postives = 208/232 (89.66%), Query Frame = 0


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MG E+Q  PQ++ +  VEQL+A+NP+NP+ILPDLENYVN  V+S+TYSL+ NLCLLRLYQ
Sbjct: 1   MGVEIQ-SPQEQSSYTVEQLVALNPFNPEILPDLENYVN--VTSQTYSLEVNLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERM+T IVARILVKALMA+P PDFSLCLFLIPERVQME+QFK+LI+LSHYLETG+F+
Sbjct: 61  FEPERMNTHIVARILVKALMAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQ 120

Query: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEAAKNRHI+EAVPGFEQAIQAYA H+LSL+YQKVPRSVLAEA+N++G SLDKF+E 
Sbjct: 121 QFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQ 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QV NSGWI+EK   +G  IV+P NEFNHPELKK + +++PLEHI RIFPILG
Sbjct: 181 QVTNSGWIVEK---EGGSIVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226

[Close]

BLAST of Carg25201 vs. Swiss-Prot
Match: sp|Q94HF1|EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica OX=39947 GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.3e-96
Identity = 166/215 (77.21%), Postives = 199/215 (92.56%), Query Frame = 0


Query: 17  VEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQIVARILV 76
           VE+L+AVNPYNPDIL DLE +VN+QVS++TY+LDANL LLRLYQFEPER+S QIV+RIL+
Sbjct: 12  VEELVAVNPYNPDILNDLEGFVNDQVSNQTYNLDANLSLLRLYQFEPERLSVQIVSRILI 71

Query: 77  KALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEAAKNRHIVEAV 136
           KALMA+P PDFSLCLFLIPE VQME+QFKTLI+LSHYLET +FRQFWDEA+KNR+I++ V
Sbjct: 72  KALMAMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVV 131

Query: 137 PGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWILEKGHGKG 196
           PGFEQAIQ+YA+HVLSLTYQKVPR VLAEAINIEGL+LDKFLEH +ANSGW++EKG  + 
Sbjct: 132 PGFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIEKG-ARS 191

Query: 197 QLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPIL 232
           QLIV+P NEFNHPELKK +++++P EH+TRIFP+L
Sbjct: 192 QLIVLPRNEFNHPELKKNTAETVPFEHVTRIFPVL 225

[Close]

BLAST of Carg25201 vs. Swiss-Prot
Match: sp|Q3T0V3|EIF3K_BOVIN (Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus OX=9913 GN=EIF3K PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.4e-28
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 0


Query: 10  QQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQ 69
           +Q  A+  + L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T 
Sbjct: 5   EQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTT 64

Query: 70  IVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEAAKN 129
           + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    +N
Sbjct: 65  VTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN 124

Query: 130 RHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWIL 189
             ++E + GFE +++ +  HV+ +TYQ + R +LAE +   G   D  L+  ++  GW  
Sbjct: 125 MDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDSQLKVWMSKYGWSA 184

Query: 190 EKGHGKGQLIVIPPNEFNHPE--LKKKSSDSI 220
           ++    GQ+ +    E   P+  ++K   DS+
Sbjct: 185 DE---SGQIFICSQEESIKPKNIVEKIDFDSV 210

[Close]

BLAST of Carg25201 vs. Swiss-Prot
Match: sp|Q9UBQ5|EIF3K_HUMAN (Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens OX=9606 GN=EIF3K PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.7e-28
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 0


Query: 10  QQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQ 69
           +Q  A+  + L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T 
Sbjct: 5   EQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTT 64

Query: 70  IVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEAAKN 129
           + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    +N
Sbjct: 65  VTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN 124

Query: 130 RHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWIL 189
             ++E + GFE +++ +  HV+ +TYQ + R +LAE +   G   D  L+  ++  GW  
Sbjct: 125 MDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSDSQLKVWMSKYGWSA 184

Query: 190 EKGHGKGQLIVIPPNEFNHPE--LKKKSSDSI 220
           ++    GQ+ +    E   P+  ++K   DS+
Sbjct: 185 DE---SGQIFICSQEESIKPKNIVEKIDFDSV 210

[Close]

BLAST of Carg25201 vs. Swiss-Prot
Match: sp|Q9DBZ5|EIF3K_MOUSE (Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus OX=10090 GN=Eif3k PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.7e-28
Identity = 71/212 (33.49%), Postives = 115/212 (54.25%), Query Frame = 0


Query: 10  QQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQ 69
           +Q  A+  + L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T 
Sbjct: 5   EQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTT 64

Query: 70  IVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQFWDEAAKN 129
           + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    +N
Sbjct: 65  VTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN 124

Query: 130 RHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWIL 189
             ++E + GFE +++ +  HV+ +TYQ + R +LAE +   G   D  L+  ++  GW  
Sbjct: 125 MDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDNQLKVWMSKYGWSA 184

Query: 190 EKGHGKGQLIVIPPNEFNHPE--LKKKSSDSI 220
           ++    GQ+ +    E   P+  ++K   DS+
Sbjct: 185 DE---SGQVFICSQEESIKPKNIVEKIDFDSV 210

[Close]

BLAST of Carg25201 vs. TrEMBL
Match: tr|A0A1S3BRJ0|A0A1S3BRJ0_CUCME (Eukaryotic translation initiation factor 3 subunit K OS=Cucumis melo OX=3656 GN=LOC103492400 PE=3 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 1.2e-123
Identity = 229/232 (98.71%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALMA+PAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QVANSGWILEKG GKGQLIVIPPNEFNHPELKKKSSDSIPL+HITRIFPILG
Sbjct: 181 QVANSGWILEKG-GKGQLIVIPPNEFNHPELKKKSSDSIPLDHITRIFPILG 231

[Close]

BLAST of Carg25201 vs. TrEMBL
Match: tr|A0A0A0LZ54|A0A0A0LZ54_CUCSA (Eukaryotic translation initiation factor 3 subunit K OS=Cucumis sativus OX=3659 GN=Csa_1G597810 PE=3 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 4.5e-123
Identity = 228/232 (98.28%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60
           MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ
Sbjct: 1   MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQ 60

Query: 61  FEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120
           FEPERMSTQIVARILVKALMA+PAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR
Sbjct: 61  FEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFR 120

Query: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180
           QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH
Sbjct: 121 QFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEH 180

Query: 181 QVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           QVANSGW LEKG GKGQLIVIPPNEFNHPELKKKSSDSIPL+HITRIFPILG
Sbjct: 181 QVANSGWTLEKG-GKGQLIVIPPNEFNHPELKKKSSDSIPLDHITRIFPILG 231

[Close]

BLAST of Carg25201 vs. TrEMBL
Match: tr|A0A1U8PGB6|A0A1U8PGB6_GOSHI (Eukaryotic translation initiation factor 3 subunit K OS=Gossypium hirsutum OX=3635 GN=LOC107958825 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 7.2e-113
Identity = 204/230 (88.70%), Postives = 220/230 (95.65%), Query Frame = 0


Query: 3   RELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFE 62
           RE  KQ QQ+++  VEQL+AVNPYNPDILPDLENYVNEQVSS+TYSLDANLCLLRLYQFE
Sbjct: 5   RETPKQ-QQQVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLRLYQFE 64

Query: 63  PERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQF 122
           PERMSTQIVARILVKALMA+PAPDFSLCLFLIPERVQME+QFKTLI+LSHYLETG+FRQF
Sbjct: 65  PERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQF 124

Query: 123 WDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQV 182
           WDEAAKNRHIVEAVPGFEQAIQ YA+HVLSLTYQK+PR VLAEAINIEGLSLDKFLEHQ 
Sbjct: 125 WDEAAKNRHIVEAVPGFEQAIQTYAIHVLSLTYQKIPRPVLAEAINIEGLSLDKFLEHQA 184

Query: 183 ANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           ANSGWILEKGHG+GQLIV+P NEFNHPELKK ++DS+PLEHITRIFPILG
Sbjct: 185 ANSGWILEKGHGRGQLIVLPRNEFNHPELKKSTADSVPLEHITRIFPILG 233

[Close]

BLAST of Carg25201 vs. TrEMBL
Match: tr|A0A0D2RTQ2|A0A0D2RTQ2_GOSRA (Eukaryotic translation initiation factor 3 subunit K OS=Gossypium raimondii OX=29730 GN=B456_009G038100 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 7.2e-113
Identity = 204/230 (88.70%), Postives = 220/230 (95.65%), Query Frame = 0


Query: 3   RELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFE 62
           RE  KQ QQ+++  VEQL+AVNPYNPDILPDLENYVNEQVSS+TYSLDANLCLLRLYQFE
Sbjct: 5   RETPKQ-QQQVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLRLYQFE 64

Query: 63  PERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETGKFRQF 122
           PERMSTQIVARILVKALMA+PAPDFSLCLFLIPERVQME+QFKTLI+LSHYLETG+FRQF
Sbjct: 65  PERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQF 124

Query: 123 WDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQV 182
           WDEAAKNRHIVEAVPGFEQAIQ YA+HVLSLTYQK+PR VLAEAINIEGLSLDKFLEHQ 
Sbjct: 125 WDEAAKNRHIVEAVPGFEQAIQTYAIHVLSLTYQKIPRPVLAEAINIEGLSLDKFLEHQA 184

Query: 183 ANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           ANSGWILEKGHG+GQLIV+P NEFNHPELKK ++DS+PLEHITRIFPILG
Sbjct: 185 ANSGWILEKGHGRGQLIVLPRNEFNHPELKKSAADSVPLEHITRIFPILG 233

[Close]

BLAST of Carg25201 vs. TrEMBL
Match: tr|A0A067KCM1|A0A067KCM1_JATCU (Eukaryotic translation initiation factor 3 subunit K OS=Jatropha curcas OX=180498 GN=JCGZ_07547 PE=3 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.6e-112
Identity = 205/235 (87.23%), Postives = 223/235 (94.89%), Query Frame = 0


Query: 1   MGRELQK---QPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLR 60
           MGRE +    Q QQ+++  VEQL+AVNPYNPDILPDLENYVNEQVSS+TYSLDANLCLLR
Sbjct: 1   MGREREPQKLQQQQQVSYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLR 60

Query: 61  LYQFEPERMSTQIVARILVKALMAIPAPDFSLCLFLIPERVQMEDQFKTLIILSHYLETG 120
           LYQFEPERMSTQIVARILVKALMA+PAPDFSLCLFLIPERVQME+QFKTLI+LSHYLETG
Sbjct: 61  LYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETG 120

Query: 121 KFRQFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKF 180
           +FRQFWDEAAK+RHIVEAVPGFEQAIQAYA+H+LSLTYQKVPRSVLAEAINIEGLSLDKF
Sbjct: 121 RFRQFWDEAAKSRHIVEAVPGFEQAIQAYAIHLLSLTYQKVPRSVLAEAINIEGLSLDKF 180

Query: 181 LEHQVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLEHITRIFPILG 233
           LE QVAN GWI+EKGHG+GQLIV+P NEFNHPELKK ++DSIPLEHITRIFPILG
Sbjct: 181 LEQQVANGGWIIEKGHGRGQLIVLPGNEFNHPELKKNAADSIPLEHITRIFPILG 235

The following BLAST results are available for this feature:

BLAST of Carg25201 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530808.1	1.7e-126	100.00	eukaryotic translation initiation factor 3 subunit K-like [Cucurbita pepo subsp....	[more]
XP_022147729.1	1.5e-125	99.14	eukaryotic translation initiation factor 3 subunit K [Momordica charantia]	[more]
XP_022968162.1	2.5e-125	99.57	eukaryotic translation initiation factor 3 subunit K-like [Cucurbita maxima]	[more]
XP_023516999.1	2.5e-125	98.71	eukaryotic translation initiation factor 3 subunit K-like [Cucurbita pepo subsp....	[more]
XP_022933863.1	5.6e-125	99.15	eukaryotic translation initiation factor 3 subunit K-like [Cucurbita moschata]	[more]

BLAST of Carg25201 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33250.1	6.4e-99	75.86	eukaryotic translation initiation factor 3K	[more]

BLAST of Carg25201 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZA3\|EIF3K_ARATH	1.2e-97	75.86	Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana OX=...	[more]
sp\|Q94HF1\|EIF3K_ORYSJ	1.3e-96	77.21	Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japo...	[more]
sp\|Q3T0V3\|EIF3K_BOVIN	7.4e-28	33.49	Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus OX=9913 GN=EI...	[more]
sp\|Q9UBQ5\|EIF3K_HUMAN	9.7e-28	33.49	Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens OX=9606 GN=...	[more]
sp\|Q9DBZ5\|EIF3K_MOUSE	9.7e-28	33.49	Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus OX=10090 GN...	[more]

BLAST of Carg25201 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRJ0\|A0A1S3BRJ0_CUCME	1.2e-123	98.71	Eukaryotic translation initiation factor 3 subunit K OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0LZ54\|A0A0A0LZ54_CUCSA	4.5e-123	98.28	Eukaryotic translation initiation factor 3 subunit K OS=Cucumis sativus OX=3659 ...	[more]
tr\|A0A1U8PGB6\|A0A1U8PGB6_GOSHI	7.2e-113	88.70	Eukaryotic translation initiation factor 3 subunit K OS=Gossypium hirsutum OX=36...	[more]
tr\|A0A0D2RTQ2\|A0A0D2RTQ2_GOSRA	7.2e-113	88.70	Eukaryotic translation initiation factor 3 subunit K OS=Gossypium raimondii OX=2...	[more]
tr\|A0A067KCM1\|A0A067KCM1_JATCU	1.6e-112	87.23	Eukaryotic translation initiation factor 3 subunit K OS=Jatropha curcas OX=18049...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0003743	translation initiation factor activity
GO:0043022	ribosome binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0005852	eukaryotic translation initiation factor 3 complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006446	regulation of translational initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR036390	WH_DNA-bd_sf
IPR000717	PCI_dom
IPR009374	eIF3k
IPR016020	Transl_init_fac_sub12_N_euk
IPR036388	WH-like_DNA-bd_sf
IPR033464	CSN8_PSD8_EIF3K

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25201-RA	Carg25201-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033464	CSN8/PSMD8/EIF3K	PFAM	PF10075	CSN8_PSD8_EIF3K	coord: 67..194 e-value: 6.0E-17 score: 61.9
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 128..227 e-value: 3.5E-9 score: 38.7
IPR016020	Translation initiation factor 3, subunit 12, N-terminal, eukaryotic	GENE3D	G3DSA:1.25.40.250		coord: 8..125 e-value: 1.2E-40 score: 139.9
IPR009374	Eukaryotic translation initiation factor 3 subunit K	PANTHER	PTHR13022	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11	coord: 8..229
IPR009374	Eukaryotic translation initiation factor 3 subunit K	HAMAP	MF_03010	eIF3k	coord: 8..232 score: 24.238
IPR000717	Proteasome component (PCI) domain	PROSITE	PS50250	PCI	coord: 47..206 score: 12.683
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 137..229
IPR016024	Armadillo-type fold	SUPERFAMILY	SSF48371	ARM repeat	coord: 10..135

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25201	Cla011129	Watermelon (97103) v1	carwmB0498
Carg25201	Csa1G597810	Cucumber (Chinese Long) v2	carcuB0528
Carg25201	MELO3C015553	Melon (DHL92) v3.5.1	carmeB0504
Carg25201	ClCG03G014750	Watermelon (Charleston Gray)	carwcgB0488
Carg25201	CSPI01G29020	Wild cucumber (PI 183967)	carcpiB0536
Carg25201	Cucsa.142070	Cucumber (Gy14) v1	carcgyB0574
Carg25201	CmaCh11G007610	Cucurbita maxima (Rimu)	carcmaB0702
Carg25201	CmaCh10G007950	Cucurbita maxima (Rimu)	carcmaB0701
Carg25201	CmoCh11G007700	Cucurbita moschata (Rifu)	carcmoB0682
Carg25201	CmoCh10G008220	Cucurbita moschata (Rifu)	carcmoB0681
Carg25201	Lsi06G003700	Bottle gourd (USVL1VR-Ls)	carlsiB452
Carg25201	Cp4.1LG18g02920	Cucurbita pepo (Zucchini)	carcpeB0706
Carg25201	Cp4.1LG04g11270	Cucurbita pepo (Zucchini)	carcpeB0707
Carg25201	CsGy1G028240	Cucumber (Gy14) v2	carcgybB0505
Carg25201	MELO3C015553.2	Melon (DHL92) v3.6.1	carmedB0509
Carg25201	CsaV3_1G041410	Cucumber (Chinese Long) v3	carcucB0534
Carg25201	Cla97C03G064980	Watermelon (97103) v2	carwmbB0526
Carg25201	Bhi02G001474	Wax gourd	carwgoB0609

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25201	Carg12930	Silver-seed gourd	carcarB103

The following block(s) are covering this gene:

None