Cp4.1LG18g02050 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g02050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Tubulin beta chain
Location	Cp4.1LG18 : 3698231 .. 3701776 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTCGATTTCGAGCATGAGGGTGACGATGTAACTATATTATGGACACTAAAAAGTTCACTCAAACTTTGCTAGTTGAAATTCAACCATCTTGTGGAGGCCTAAGAATTGACCATCCACCCTTTGATTTCAAATCCTTACCCACTTCATCTTCCATAAATTCCTATATAATCCACCATCACATTCACTTCTCAATTCACTCTCCTCGCTGCTCCCAATCGCTTGACGTGCCTCGTACTCCACCGCCGGTTTCCGCCGTCTCCCGTCGGAACCGACCCCATTTTGTCCTCTTTCGCCGGAACCTCCTCGGTAAGTTTCAATTTCTCAGATCTGATTGCTGCATTTGATTCCTTCCGTGTTCTAGATTTGGAAAACTAAGAGTGATCTGGTATTGTCTTATTCTCACATCGAAATGTCATGAATCTGTAATTTGATCGGGTTTTTTTCGAACTCGGTTGTGATTTGTGCTGGGTGATTGTATGGAATTTCACTTCCTTGTTTGGAAAGCTTCCGATCCAATGTCTACGATGATATTGAAATGTCTGCATTCAATGCAGAGGATTTTGAGTTTCGATGTCTTATTGATCTCATCTTGCTGATCTTCTATTCTGTGTTCTTTGATTTTGGTGTCAATCGAATTATGTGCTTAACTTCAGAGTGTTCTTGTGGACAGCAAGAAGATGAGGGAGATTCTTCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGATAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAATCTATATGTCTCAGATCATCTTGTGCTTGATTAGATGCGATTGCTTGGATCTAGTGAGAATTGTTTAAGTTGTGGCCTTTAGATTTACAATTAGTTGTTTTGCTAATGTACCCTTTATTTTTAGTTTTGGATGTGATTTTAAGACATGATTGAGAGTGTCAAATAATGGATCCAATATCGACCCACGTGCTTTGCATCTTTGTTTGAGTTATATCATATAACGTTATTAAACTCGTTCAAGTTCTATTAAATGACGTCGAAAAGTGTCGAAAAGTGCCAAAAAGTATGTTAATGTCTTCTTTTGCTACTTTACTTTTTGCTTTTAATACTGTTTTTAAAAGAGTGTTCTTGAGCATGTGTCCAATGGTTAAGCACTCCTGATAGCATCTTCTTCATGGCCTTGCTTGCTGTAAGGAAAGGCCATGCTAAAGTCAATGAGATCCGTAGTTATTAATTAATTTTGTACACAAGAAGACAAATTTTCTTCATGTTCTTACACACAAGATCTGAAATTTTGTTCTTATTTATTGATGAGTAGAAGTCGCCAATACCCCCTTTTCGTTATGTCGTTTGTTTTTGTCTCAACTTTATTGAGATGTCAGCTTGCACCATTCATACTTTAGAAAGTCTTTTCTGTTCCATAGAAAATATTACAGTTTCCGATATTCGGATTTCTGATTCATCTGCTGTTTTTAACTCGGTATGTTTGCTCGTCATTTTTCTGTGTCCTCACAGGTTTCCAAGTGTGCCATTCACTTGGTGGAGGCACCGGTTCTGGAATGGGGACTCTTCTGATTTCGAAAATCAGAGAAGAATATCCAGACAGGATGTTGCTTACTTTCTCCGTCTTCCCTTCGCCGAAAGTGTCTGATACAGTCGTCGAGCCATACAATGCCACACTTTCCGTTCATCAGCTCGTCGAGAATGCGGATGAGTGCATGGTGCTGGACAATGAAGCATTATATGATATTTGCTTCAGGACTCTCAAGTTAACTACTCCTAGCTGTAAGTATAATATCAATCATTTGTTGATAAACAAGAAGAACATGATGGTGGAAGGATTTGATTCAGTATTTCAAGCAATTCTAATCTAAATTGGCATTAAAGTTAATCTAATCAAGACATGGAGGCCGGTCATTTTAATGAGCATTCTAAGATGATGAAAGCATCTCCAGTGTTTTTAGGTTCCCCTGTGAAATTCTAATCTCCTGACCTCTAAATTTAACTGTCAGTATATTGATGTCCTATTATCTTACCTGAAACTTTTGTGTTCCGTTTCCAAAGATTAGAGCTGCACCTTATACTTTAAAAACAGTAGCTAATATTTGCGATCTCACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTTCCTAGCAGATGTGTTTATGAGGGGAAGCCCAAAAGGGAAAGCCCAAAGAGGACAATATGCTTGAGCTGTTATAAATGGTATCAGAGCCAAACACCGTGCGGTGTGCCAATGAGGACGCTAGTCCCCAAGGGAGTGGATTGTGAGATCTCACACCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGAGTGTAGAAACCTCTCCCTAGCAGACGCCTTTTAAACACCTTAAGAGGAAGGCTGAAAAGGAAAGCTCAACGAGGATAATATCTACTAACGGTGGGCTTGGGATATTACAAATACACATGTAGAAGCGCCCATAAACATAAATTACAAGAACTGATTGTAACATGTAAATTTGACTGTCATTTTAATTTGTTTTGTTTTTGATTTCTTTGTTCTTGAAACAGTTGGGGATCTCAACCATTTAATTTCTGCTACAATGAGTGGGGTGACATGCTGTCTGAGATTTCCTGGCCAGCTTAACTCTGACCTGAGAAAACTTGCTGTGAATCTAATTCCCTTCCCTCGTCTACACTTCTTCATGGTGGGATTTGCTCCTCTTACCTCACGTGGGTCGCAGCTATATCGGGCGCTGACCGTCCCCGAGTTGACACAGCAAATGTGGGATTCTAAAAACATGATGTGCGCTGCAGACCCACGCCATGGCCGATACCTCACGGCCTCTGCCATGTTCAGGGGGAAAATGAGTACTAAAGAAGTTGATGAACAGATGATCAATGTTCAAAACAAGAACTCCTCATACTTTGTGGAATGGATTCCAAACAATGTTAAATCCAGCGTTTGTGACATTGCTCCTAAAGGACTTTCCATGGCATCGACCTTCATCGGAAACTCAACCTCGATTCAGGAAATGTTCAGGCGTGTGAGCGAGCAGTTCACTGCCATGTTCAGGAGGAAGGCTTTCTTGCACTGGTACACTGGAGAAGGAATGGATGAAATGGAGTTCACTGAGGCAGAAAGCAACATGAACGATCTCGTTTCCGAGTATCAACAGTACCAGGACGCCACAGCTGATGAGGAGGAGTATTACGACGAGGAAGACGAGGAGGCTGAACAC

mRNA sequence

TAGTCGATTTCGAGCATGAGGGTGACGATGTAACTATATTATGGACACTAAAAAGTTCACTCAAACTTTGCTAGTTGAAATTCAACCATCTTGTGGAGGCCTAAGAATTGACCATCCACCCTTTGATTTCAAATCCTTACCCACTTCATCTTCCATAAATTCCTATATAATCCACCATCACATTCACTTCTCAATTCACTCTCCTCGCTGCTCCCAATCGCTTGACGTGCCTCGTACTCCACCGCCGGTTTCCGCCGTCTCCCGTCGGAACCGACCCCATTTTGTCCTCTTTCGCCGGAACCTCCTCGCAAGAAGATGAGGGAGATTCTTCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGATAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTTTCCAAGTGTGCCATTCACTTGGTGGAGGCACCGGTTCTGGAATGGGGACTCTTCTGATTTCGAAAATCAGAGAAGAATATCCAGACAGGATGTTGCTTACTTTCTCCGTCTTCCCTTCGCCGAAAGTGTCTGATACAGTCGTCGAGCCATACAATGCCACACTTTCCGTTCATCAGCTCGTCGAGAATGCGGATGAGTGCATGGTGCTGGACAATGAAGCATTATATGATATTTGCTTCAGGACTCTCAAGCGTGTGAGCGAGCAGTTCACTGCCATGTTCAGGAGGAAGGCTTTCTTGCACTGGTACACTGGAGAAGGAATGGATGAAATGGAGTTCACTGAGGCAGAAAGCAACATGAACGATCTCGTTTCCGAGTATCAACAGTACCAGGACGCCACAGCTGATGAGGAGGAGTATTACGACGAGGAAGACGAGGAGGCTGAACAC

Coding sequence (CDS)

ATGAGGGAGATTCTTCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGATAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTTTCCAAGTGTGCCATTCACTTGGTGGAGGCACCGGTTCTGGAATGGGGACTCTTCTGATTTCGAAAATCAGAGAAGAATATCCAGACAGGATGTTGCTTACTTTCTCCGTCTTCCCTTCGCCGAAAGTGTCTGATACAGTCGTCGAGCCATACAATGCCACACTTTCCGTTCATCAGCTCGTCGAGAATGCGGATGAGTGCATGGTGCTGGACAATGAAGCATTATATGATATTTGCTTCAGGACTCTCAAGCGTGTGAGCGAGCAGTTCACTGCCATGTTCAGGAGGAAGGCTTTCTTGCACTGGTACACTGGAGAAGGAATGGATGAAATGGAGTTCACTGAGGCAGAAAGCAACATGAACGATCTCGTTTCCGAGTATCAACAGTACCAGGACGCCACAGCTGATGAGGAGGAGTATTACGACGAGGAAGACGAGGAGGCTGAACAC

Protein sequence

MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEYYDEEDEEAEH

Homology

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BLAST of Cp4.1LG18g02050 vs. Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 8.3e-127
Identity = 211/222 (95.05%), Postives = 218/222 (98.20%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222

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BLAST of Cp4.1LG18g02050 vs. Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 8.3e-127
Identity = 211/222 (95.05%), Postives = 218/222 (98.20%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222

[Close]

BLAST of Cp4.1LG18g02050 vs. Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 8.3e-127
Identity = 211/222 (95.05%), Postives = 218/222 (98.20%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222

[Close]

BLAST of Cp4.1LG18g02050 vs. Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 1.1e-126
Identity = 211/222 (95.05%), Postives = 216/222 (97.30%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222

[Close]

BLAST of Cp4.1LG18g02050 vs. Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.4e-126
Identity = 211/222 (95.05%), Postives = 217/222 (97.75%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY GTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222

[Close]

BLAST of Cp4.1LG18g02050 vs. TrEMBL
Match: A0A103Y6G5_CYNCS (Beta-tubulin (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_018295 PE=3 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 1.9e-149
Identity = 263/304 (86.51%), Postives = 274/304 (90.13%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEV+C+EHGIDPTG+Y G+SD+QLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCEEHGIDPTGKYIGSSDVQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMD VRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDGVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK------------------------ 240
           EPYNATLSVHQLVENADECMVLDNEALYDICF+TLK                        
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFKTLKLTNPSWLSMASTFIGNSTSIQEMF 240

Query: 241 -RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEYYDE 280
            RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA+E  Y +E
Sbjct: 241 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEYGYEEE 300

[Close]

BLAST of Cp4.1LG18g02050 vs. TrEMBL
Match: A0A103XG02_CYNCS (Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_007908 PE=3 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 3.2e-149
Identity = 262/297 (88.22%), Postives = 272/297 (91.58%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TGRY G  DLQLERVNVYYNEASCGR+V
Sbjct: 45  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDQDLQLERVNVYYNEASCGRFV 104

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 105 PRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 164

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 165 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 224

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK----------------RVSEQFTA 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK                RVSEQFTA
Sbjct: 225 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSWNSTSIQEMFRRVSEQFTA 284

Query: 241 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEYYDEEDEEAE 282
           MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEE  Y+EE+E  E
Sbjct: 285 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEEEEEGYE 341

[Close]

BLAST of Cp4.1LG18g02050 vs. TrEMBL
Match: A0A0B0PPV7_GOSAR (Tubulin beta-8 chain-like protein OS=Gossypium arboreum GN=F383_06752 PE=3 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 6.0e-148
Identity = 255/279 (91.40%), Postives = 269/279 (96.42%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+Y G SDLQLER+NVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGKYHGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQFTAMFRRKAFLHWYTGEGM 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +   ++MFRRKAFLHWYTGEGM
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP--SSMFRRKAFLHWYTGEGM 240

Query: 241 DEMEFTEAESNMNDLVSEYQQYQDATADEEEYYDEEDEE 280
           DEMEFTEAESNMNDLVSEYQQYQDATAD+EE Y+EE+EE
Sbjct: 241 DEMEFTEAESNMNDLVSEYQQYQDATADDEEEYEEEEEE 277

[Close]

BLAST of Cp4.1LG18g02050 vs. TrEMBL
Match: A0A0B0P4U1_GOSAR (Tubulin beta-6 chain OS=Gossypium arboreum GN=F383_09979 PE=3 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 3.3e-146
Identity = 255/295 (86.44%), Postives = 271/295 (91.86%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTG--TSDLQLERVNVYYNEASCGR 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G  +SD+QLER++VYYNEAS GR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
           YVPRAVLMDLEPGTMDS+R+GP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDT 180
           VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM++TFSVFPSPKVSDT
Sbjct: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 180

Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLK----------------RVSEQF 240
           VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLK                RVSEQF
Sbjct: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSWNSTSIQEMFRRVSEQF 240

Query: 241 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEYYDEED 278
           TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT ++EE Y+ E+
Sbjct: 241 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVEDEEEYEGEE 295

[Close]

BLAST of Cp4.1LG18g02050 vs. TrEMBL
Match: A0A103Y6Z7_CYNCS (Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_018049 PE=3 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 1.1e-144
Identity = 258/312 (82.69%), Postives = 272/312 (87.18%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+YTG S+LQLER+NVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDVTGKYTGDSELQLERINVYYNEASGGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+G YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGAYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM++TFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK------------------------ 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK                        
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKFSNDNFLMASTFIGNST 240

Query: 241 -------RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 282
                  RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE
Sbjct: 241 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 300

[Close]

BLAST of Cp4.1LG18g02050 vs. TAIR10
Match: AT5G12250.1 (AT5G12250.1 beta-6 tubulin)

HSP 1 Score: 454.1 bits (1167), Expect = 6.1e-128
Identity = 211/222 (95.05%), Postives = 216/222 (97.30%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222

[Close]

BLAST of Cp4.1LG18g02050 vs. TAIR10
Match: AT5G62700.1 (AT5G62700.1 tubulin beta chain 3)

HSP 1 Score: 444.1 bits (1141), Expect = 6.3e-125
Identity = 205/222 (92.34%), Postives = 215/222 (96.85%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222

[Close]

BLAST of Cp4.1LG18g02050 vs. TAIR10
Match: AT5G62690.1 (AT5G62690.1 tubulin beta chain 2)

HSP 1 Score: 444.1 bits (1141), Expect = 6.3e-125
Identity = 205/222 (92.34%), Postives = 215/222 (96.85%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222

[Close]

BLAST of Cp4.1LG18g02050 vs. TAIR10
Match: AT1G75780.1 (AT1G75780.1 tubulin beta-1 chain)

HSP 1 Score: 442.2 bits (1136), Expect = 2.4e-124
Identity = 208/223 (93.27%), Postives = 215/223 (96.41%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTS-DLQLERVNVYYNEASCGRY 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHG+DPTGRY G S DLQLER+NVYYNEAS GRY
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
           VPRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120

Query: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTV 180
           VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTV
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 180

Query: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSF 223

[Close]

BLAST of Cp4.1LG18g02050 vs. TAIR10
Match: AT5G23860.1 (AT5G23860.1 tubulin beta 8)

HSP 1 Score: 441.0 bits (1133), Expect = 5.4e-124
Identity = 205/222 (92.34%), Postives = 214/222 (96.40%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TGRY G +DLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQF 223
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +  F
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSF 222

[Close]

BLAST of Cp4.1LG18g02050 vs. NCBI nr
Match: gi|976918208|gb|KVI03404.1| (beta-tubulin, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 536.6 bits (1381), Expect = 2.7e-149
Identity = 263/304 (86.51%), Postives = 274/304 (90.13%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEV+C+EHGIDPTG+Y G+SD+QLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCEEHGIDPTGKYIGSSDVQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMD VRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDGVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK------------------------ 240
           EPYNATLSVHQLVENADECMVLDNEALYDICF+TLK                        
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFKTLKLTNPSWLSMASTFIGNSTSIQEMF 240

Query: 241 -RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEYYDE 280
            RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA+E  Y +E
Sbjct: 241 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEYGYEEE 300

[Close]

BLAST of Cp4.1LG18g02050 vs. NCBI nr
Match: gi|976902100|gb|KVH90058.1| (beta-tubulin [Cynara cardunculus var. scolymus])

HSP 1 Score: 535.8 bits (1379), Expect = 4.5e-149
Identity = 262/297 (88.22%), Postives = 272/297 (91.58%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TGRY G  DLQLERVNVYYNEASCGR+V
Sbjct: 45  MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDQDLQLERVNVYYNEASCGRFV 104

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 105 PRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 164

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 165 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 224

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK----------------RVSEQFTA 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK                RVSEQFTA
Sbjct: 225 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSWNSTSIQEMFRRVSEQFTA 284

Query: 241 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEYYDEEDEEAE 282
           MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEE  Y+EE+E  E
Sbjct: 285 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEEEEEGYE 341

[Close]

BLAST of Cp4.1LG18g02050 vs. NCBI nr
Match: gi|728845993|gb|KHG25436.1| (Tubulin beta-8 chain -like protein [Gossypium arboreum])

HSP 1 Score: 531.6 bits (1368), Expect = 8.6e-148
Identity = 255/279 (91.40%), Postives = 269/279 (96.42%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+Y G SDLQLER+NVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGKYHGDSDLQLERINVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM+LTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKRVSEQFTAMFRRKAFLHWYTGEGM 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK  +   ++MFRRKAFLHWYTGEGM
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTP--SSMFRRKAFLHWYTGEGM 240

Query: 241 DEMEFTEAESNMNDLVSEYQQYQDATADEEEYYDEEDEE 280
           DEMEFTEAESNMNDLVSEYQQYQDATAD+EE Y+EE+EE
Sbjct: 241 DEMEFTEAESNMNDLVSEYQQYQDATADDEEEYEEEEEE 277

[Close]

BLAST of Cp4.1LG18g02050 vs. NCBI nr
Match: gi|728842300|gb|KHG21743.1| (Tubulin beta-6 chain [Gossypium arboreum])

HSP 1 Score: 525.8 bits (1353), Expect = 4.7e-146
Identity = 255/295 (86.44%), Postives = 271/295 (91.86%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTG--TSDLQLERVNVYYNEASCGR 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G  +SD+QLER++VYYNEAS GR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
           YVPRAVLMDLEPGTMDS+R+GP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDT 180
           VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM++TFSVFPSPKVSDT
Sbjct: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 180

Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLK----------------RVSEQF 240
           VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLK                RVSEQF
Sbjct: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSWNSTSIQEMFRRVSEQF 240

Query: 241 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEYYDEED 278
           TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT ++EE Y+ E+
Sbjct: 241 TAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVEDEEEYEGEE 295

[Close]

BLAST of Cp4.1LG18g02050 vs. NCBI nr
Match: gi|976918491|gb|KVI03667.1| (beta-tubulin [Cynara cardunculus var. scolymus])

HSP 1 Score: 520.8 bits (1340), Expect = 1.5e-144
Identity = 258/312 (82.69%), Postives = 272/312 (87.18%), Query Frame = 1


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TG+YTG S+LQLER+NVYYNEAS GR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDVTGKYTGDSELQLERINVYYNEASGGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+G YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGAYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMLLTFSVFPSPKVSDTVV 180
           RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM++TFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVV 180

Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK------------------------ 240
           EPYNATLSVHQLVENADECMVLDNEALYDICFRTLK                        
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCKFSNDNFLMASTFIGNST 240

Query: 241 -------RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 282
                  RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE
Sbjct: 241 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g02050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBB2_WHEAT	8.3e-127	95.05	Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1	[more]
TBB_HORVU	8.3e-127	95.05	Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1	[more]
TBB2_ELEIN	8.3e-127	95.05	Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1	[more]
TBB6_ARATH	1.1e-126	95.05	Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1	[more]
TBB1_WHEAT	1.4e-126	95.05	Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1	[more]

BLAST of Cp4.1LG18g02050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A103Y6G5_CYNCS	1.9e-149	86.51	Beta-tubulin (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_018295 PE=3 ...	[more]
A0A103XG02_CYNCS	3.2e-149	88.22	Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_007908 PE=3 SV=1	[more]
A0A0B0PPV7_GOSAR	6.0e-148	91.40	Tubulin beta-8 chain-like protein OS=Gossypium arboreum GN=F383_06752 PE=3 SV=1	[more]
A0A0B0P4U1_GOSAR	3.3e-146	86.44	Tubulin beta-6 chain OS=Gossypium arboreum GN=F383_09979 PE=3 SV=1	[more]
A0A103Y6Z7_CYNCS	1.1e-144	82.69	Beta-tubulin OS=Cynara cardunculus var. scolymus GN=Ccrd_018049 PE=3 SV=1	[more]

BLAST of Cp4.1LG18g02050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12250.1	6.1e-128	95.05	beta-6 tubulin	[more]
AT5G62700.1	6.3e-125	92.34	tubulin beta chain 3	[more]
AT5G62690.1	6.3e-125	92.34	tubulin beta chain 2	[more]
AT1G75780.1	2.4e-124	93.27	tubulin beta-1 chain	[more]
AT5G23860.1	5.4e-124	92.34	tubulin beta 8	[more]

BLAST of Cp4.1LG18g02050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|976918208\|gb\|KVI03404.1\|	2.7e-149	86.51	beta-tubulin, partial [Cynara cardunculus var. scolymus]	[more]
gi\|976902100\|gb\|KVH90058.1\|	4.5e-149	88.22	beta-tubulin [Cynara cardunculus var. scolymus]	[more]
gi\|728845993\|gb\|KHG25436.1\|	8.6e-148	91.40	Tubulin beta-8 chain -like protein [Gossypium arboreum]	[more]
gi\|728842300\|gb\|KHG21743.1\|	4.7e-146	86.44	Tubulin beta-6 chain [Gossypium arboreum]	[more]
gi\|976918491\|gb\|KVI03667.1\|	1.5e-144	82.69	beta-tubulin [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding
GO:0005200	structural constituent of cytoskeleton

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **INTERPRO**
Term	Definition
IPR023123	Tubulin_C
IPR017975	Tubulin_CS
IPR013838	Beta-tubulin_BS
IPR008280	Tub_FtsZ_C
IPR003008	Tubulin_FtsZ_GTPase
IPR002453	Beta_tubulin
IPR000217	Tubulin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0009409	response to cold
biological_process	GO:0006833	water transport
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0048767	root hair elongation
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0000271	polysaccharide biosynthetic process
biological_process	GO:0009825	multidimensional cell growth
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
biological_process	GO:0051258	protein polymerization
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0006084	acetyl-CoA metabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0016132	brassinosteroid biosynthetic process
biological_process	GO:0009932	cell tip growth
biological_process	GO:0071555	cell wall organization
biological_process	GO:0019344	cysteine biosynthetic process
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005200	structural constituent of cytoskeleton

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g02050.1	Cp4.1LG18g02050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 10..30 score: 9.0E-91coord: 51..70 score: 9.0E-91coord: 151..172 score: 9.0E-91coord: 190..210 score: 9.0E-91coord: 132..150 score: 9.0E-91coord: 93..104 score: 9.0E-91coord: 176..189 score: 9.0E-91coord: 106..130 score: 9.0
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 5..279 score: 2.5E
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 108..126 score: 2.4E-34coord: 41..58 score: 2.4E-34coord: 212..224 score: 2.4E-34coord: 152..164 score: 2.4E-34coord: 88..99 score: 2.4
IPR003008	Tubulin/FtsZ, GTPase domain	GENE3D	G3DSA:3.40.50.1440		coord: 1..219 score: 5.0E
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..211 score: 1.2
IPR003008	Tubulin/FtsZ, GTPase domain	SMART	SM00864	Tubulin_4	coord: 47..230 score: 2.6
IPR003008	Tubulin/FtsZ, GTPase domain	unknown	SSF52490	Tubulin nucleotide-binding domain-like	coord: 1..223 score: 3.92
IPR008280	Tubulin/FtsZ, C-terminal	unknown	SSF55307	Tubulin C-terminal domain-like	coord: 212..263 score: 2.11
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4 scor
IPR017975	Tubulin, conserved site	PROSITE	PS00227	TUBULIN	coord: 140..146 scor
IPR023123	Tubulin, C-terminal	GENE3D	G3DSA:1.10.287.600		coord: 220..267 score: 1.0
None	No IPR available	unknown	Coil	Coil	coord: 245..265 scor
None	No IPR available	PANTHER	PTHR11588:SF106	TUBULIN BETA-6 CHAIN	coord: 5..279 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g02050	Cucsa.355700	Cucumber (Gy14) v1	cgycpeB0928
Cp4.1LG18g02050	CmaCh10G008800	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g02050	CmaCh11G008920	Cucurbita maxima (Rimu)	cmacpeB126
Cp4.1LG18g02050	CmoCh11G009060	Cucurbita moschata (Rifu)	cmocpeB104
Cp4.1LG18g02050	CmoCh10G009210	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g02050	Cla007342	Watermelon (97103) v1	cpewmB356
Cp4.1LG18g02050	Csa1G629200	Cucumber (Chinese Long) v2	cpecuB349
Cp4.1LG18g02050	MELO3C015098	Melon (DHL92) v3.5.1	cpemeB329
Cp4.1LG18g02050	ClCG03G012430	Watermelon (Charleston Gray)	cpewcgB327
Cp4.1LG18g02050	CSPI01G31190	Wild cucumber (PI 183967)	cpecpiB350
Cp4.1LG18g02050	Lsi06G006000	Bottle gourd (USVL1VR-Ls)	cpelsiB299
Cp4.1LG18g02050	MELO3C015098.2	Melon (DHL92) v3.6.1	cpemedB387
Cp4.1LG18g02050	CsaV3_1G043560	Cucumber (Chinese Long) v3	cpecucB0428
Cp4.1LG18g02050	Bhi02G001230	Wax gourd	cpewgoB0468
Cp4.1LG18g02050	CsGy1G030380	Cucumber (Gy14) v2	cgybcpeB039
Cp4.1LG18g02050	Carg17851	Silver-seed gourd	carcpeB1341
Cp4.1LG18g02050	Carg25978	Silver-seed gourd	carcpeB1239

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG18g02050	Cp4.1LG04g12600	Cucurbita pepo (Zucchini)	cpecpeB363

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g02050	Cucurbita pepo (Zucchini)	cpecpeB369
Cp4.1LG18g02050	Cucurbita maxima (Rimu)	cmacpeB632
Cp4.1LG18g02050	Cucurbita moschata (Rifu)	cmocpeB581