Carg25978 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25978
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tubulin beta chain
Location	Cucurbita_argyrosperma_scaffold_311 : 58889 .. 59317 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGAGATCCTTCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAACTTGAACGTGTGAATGTGTACTACAATGAGGCTTCTTGTGGACGTTATGTTCCTCGTGCTGTGCTCATGGATCTCGAGCCTGGTACCATGGACAGTGTGAGAACGGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTCTTTGGGCAATCTGGTGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATTCTGTGCTCGATGTTGTCAGAAAAGAAGCCGAGAACTGTGATTGTCTTCAAGGTATAGTCTCTGTCTCAGATCATGCGCTTGATTAG

mRNA sequence

ATGAGGGAGATCCTTCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAACTTGAACGTGTGAATGTGTACTACAATGAGGCTTCTTGTGGACGTTATGTTCCTCGTGCTGTGCTCATGGATCTCGAGCCTGGTACCATGGACAGTGTGAGAACGGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTCTTTGGGCAATCTGGTGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATTCTGTGCTCGATGTTGTCAGAAAAGAAGCCGAGAACTGTGATTGTCTTCAAGGTATAGTCTCTGTCTCAGATCATGCGCTTGATTAG

Coding sequence (CDS)

ATGAGGGAGATCCTTCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAACTTGAACGTGTGAATGTGTACTACAATGAGGCTTCTTGTGGACGTTATGTTCCTCGTGCTGTGCTCATGGATCTCGAGCCTGGTACCATGGACAGTGTGAGAACGGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTCTTTGGGCAATCTGGTGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATTCTGTGCTCGATGTTGTCAGAAAAGAAGCCGAGAACTGTGATTGTCTTCAAGGTATAGTCTCTGTCTCAGATCATGCGCTTGATTAG

Protein sequence

MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGIVSVSDHALD

Homology

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BLAST of Carg25978 vs. NCBI nr
Match: XP_022925330.1 (tubulin beta-6 chain-like [Cucurbita moschata] >XP_022925337.1 tubulin beta-6 chain-like [Cucurbita moschata])

HSP 1 Score: 288.9 bits (738), Expect = 9.5e-75
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. NCBI nr
Match: XP_022974063.1 (tubulin beta-6 chain-like [Cucurbita maxima] >XP_022974071.1 tubulin beta-6 chain-like [Cucurbita maxima])

HSP 1 Score: 288.9 bits (738), Expect = 9.5e-75
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. NCBI nr
Match: XP_023531566.1 (tubulin beta-6 chain-like [Cucurbita pepo subsp. pepo] >XP_023531567.1 tubulin beta-6 chain-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.9 bits (738), Expect = 9.5e-75
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

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BLAST of Carg25978 vs. NCBI nr
Match: XP_004139067.1 (PREDICTED: tubulin beta-6 chain [Cucumis sativus] >KGN66563.1 hypothetical protein Csa_1G629200 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 2.1e-74
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. NCBI nr
Match: XP_008450322.1 (PREDICTED: tubulin beta-6 chain [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 2.1e-74
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. TAIR10
Match: AT5G12250.1 (beta-6 tubulin)

HSP 1 Score: 282.0 bits (720), Expect = 2.1e-76
Identity = 126/132 (95.45%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. TAIR10
Match: AT5G62690.1 (tubulin beta chain 2)

HSP 1 Score: 274.2 bits (700), Expect = 4.4e-74
Identity = 122/132 (92.42%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. TAIR10
Match: AT5G62700.1 (tubulin beta chain 3)

HSP 1 Score: 274.2 bits (700), Expect = 4.4e-74
Identity = 122/132 (92.42%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. TAIR10
Match: AT5G23860.1 (tubulin beta 8)

HSP 1 Score: 271.2 bits (692), Expect = 3.7e-73
Identity = 122/132 (92.42%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TGRY G +DLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. TAIR10
Match: AT1G75780.1 (tubulin beta-1 chain)

HSP 1 Score: 270.8 bits (691), Expect = 4.8e-73
Identity = 123/133 (92.48%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTS-DLQLERVNVYYNEASCGRY 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHG+DPTGRY G S DLQLER+NVYYNEAS GRY
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 120
           VPRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120

Query: 121 VRKEAENCDCLQG 133
           VRKEAENCDCLQG
Sbjct: 121 VRKEAENCDCLQG 133

[Close]

BLAST of Carg25978 vs. Swiss-Prot
Match: sp|Q9ZPN9|TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 5.8e-76
Identity = 128/132 (96.97%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. Swiss-Prot
Match: sp|Q9ZRB1|TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum OX=4565 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 5.8e-76
Identity = 128/132 (96.97%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. Swiss-Prot
Match: sp|P93176|TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 5.8e-76
Identity = 128/132 (96.97%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. Swiss-Prot
Match: sp|Q43594|TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-75
Identity = 128/132 (96.97%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY GTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. Swiss-Prot
Match: sp|Q9ZRB2|TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum OX=4565 GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-75
Identity = 128/132 (96.97%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY GTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. TrEMBL
Match: tr|A0A1S3BNZ0|A0A1S3BNZ0_CUCME (Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103491964 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. TrEMBL
Match: tr|A0A0A0LXT7|A0A0A0LXT7_CUCSA (Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G629200 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-74
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. TrEMBL
Match: tr|A0A1U8AVA7|A0A1U8AVA7_NELNU (Tubulin beta chain OS=Nelumbo nucifera OX=4432 GN=LOC104607854 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.1e-74
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

[Close]

BLAST of Carg25978 vs. TrEMBL
Match: tr|A0A2I0VMK4|A0A2I0VMK4_9ASPA (Tubulin beta chain OS=Dendrobium catenatum OX=906689 GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.1e-74
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

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BLAST of Carg25978 vs. TrEMBL
Match: tr|A0A200PZQ3|A0A200PZQ3_9MAGN (Tubulin beta chain OS=Macleaya cordata OX=56857 GN=BVC80_1099g2 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.1e-74
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQG 133
           RKEAENCDCLQG
Sbjct: 121 RKEAENCDCLQG 132

The following BLAST results are available for this feature:

BLAST of Carg25978 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925330.1	9.5e-75	100.00	tubulin beta-6 chain-like [Cucurbita moschata] >XP_022925337.1 tubulin beta-6 ch...	[more]
XP_022974063.1	9.5e-75	100.00	tubulin beta-6 chain-like [Cucurbita maxima] >XP_022974071.1 tubulin beta-6 chai...	[more]
XP_023531566.1	9.5e-75	100.00	tubulin beta-6 chain-like [Cucurbita pepo subsp. pepo] >XP_023531567.1 tubulin b...	[more]
XP_004139067.1	2.1e-74	99.24	PREDICTED: tubulin beta-6 chain [Cucumis sativus] >KGN66563.1 hypothetical prote...	[more]
XP_008450322.1	2.1e-74	99.24	PREDICTED: tubulin beta-6 chain [Cucumis melo]	[more]

BLAST of Carg25978 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12250.1	2.1e-76	95.45	beta-6 tubulin	[more]
AT5G62690.1	4.4e-74	92.42	tubulin beta chain 2	[more]
AT5G62700.1	4.4e-74	92.42	tubulin beta chain 3	[more]
AT5G23860.1	3.7e-73	92.42	tubulin beta 8	[more]
AT1G75780.1	4.8e-73	92.48	tubulin beta-1 chain	[more]

BLAST of Carg25978 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZPN9\|TBB2_ELEIN	5.8e-76	96.97	Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1	[more]
sp\|Q9ZRB1\|TBB2_WHEAT	5.8e-76	96.97	Tubulin beta-2 chain OS=Triticum aestivum OX=4565 GN=TUBB2 PE=2 SV=1	[more]
sp\|P93176\|TBB_HORVU	5.8e-76	96.97	Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1	[more]
sp\|Q43594\|TBB1_ORYSJ	1.0e-75	96.97	Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2	[more]
sp\|Q9ZRB2\|TBB1_WHEAT	1.0e-75	96.97	Tubulin beta-1 chain OS=Triticum aestivum OX=4565 GN=TUBB1 PE=2 SV=1	[more]

BLAST of Carg25978 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNZ0\|A0A1S3BNZ0_CUCME	1.4e-74	99.24	Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103491964 PE=3 SV=1	[more]
tr\|A0A0A0LXT7\|A0A0A0LXT7_CUCSA	1.4e-74	99.24	Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G629200 PE=3 SV=1	[more]
tr\|A0A1U8AVA7\|A0A1U8AVA7_NELNU	4.1e-74	98.48	Tubulin beta chain OS=Nelumbo nucifera OX=4432 GN=LOC104607854 PE=3 SV=1	[more]
tr\|A0A2I0VMK4\|A0A2I0VMK4_9ASPA	4.1e-74	98.48	Tubulin beta chain OS=Dendrobium catenatum OX=906689 GN=TUBB1 PE=3 SV=1	[more]
tr\|A0A200PZQ3\|A0A200PZQ3_9MAGN	4.1e-74	98.48	Tubulin beta chain OS=Macleaya cordata OX=56857 GN=BVC80_1099g2 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005200	structural constituent of cytoskeleton
GO:0005525	GTP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **INTERPRO**
Term	Definition
IPR013838	Beta-tubulin_BS
IPR036525	Tubulin/FtsZ_GTPase_sf
IPR003008	Tubulin_FtsZ_GTPase
IPR002453	Beta_tubulin
IPR000217	Tubulin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25978-RA	Carg25978-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 93..104 score: 76.26 coord: 51..70 score: 66.6 coord: 106..130 score: 70.19 coord: 10..30 score: 71.89
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 1..134
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 88..99 score: 94.76 coord: 108..126 score: 87.58 coord: 41..58 score: 75.84
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..134 e-value: 1.1E-37 score: 130.1
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	G3DSA:3.40.50.1440		coord: 1..140 e-value: 6.7E-65 score: 221.2
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	SSF52490	Tubulin nucleotide-binding domain-like	coord: 1..136
None	No IPR available	PANTHER	PTHR11588:SF106	TUBULIN BETA-6 CHAIN	coord: 1..134
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25978	Cp4.1LG18g02050	Cucurbita pepo (Zucchini)	carcpeB1239
Carg25978	Cp4.1LG04g12600	Cucurbita pepo (Zucchini)	carcpeB1240
Carg25978	Cla97C03G062790	Watermelon (97103) v2	carwmbB0928
Carg25978	Bhi02G001230	Wax gourd	carwgoB1035

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25978	Carg17851	Silver-seed gourd	carcarB640

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25978	Cucumber (Gy14) v2	carcgybB0878
Carg25978	Cucumber (Gy14) v1	carcgyB1010
Carg25978	Cucurbita maxima (Rimu)	carcmaB1230
Carg25978	Cucurbita maxima (Rimu)	carcmaB1231
Carg25978	Cucurbita moschata (Rifu)	carcmoB1200
Carg25978	Cucurbita moschata (Rifu)	carcmoB1201
Carg25978	Wild cucumber (PI 183967)	carcpiB0925
Carg25978	Cucumber (Chinese Long) v2	carcuB0905
Carg25978	Cucumber (Chinese Long) v3	carcucB0928
Carg25978	Bottle gourd (USVL1VR-Ls)	carlsiB807
Carg25978	Melon (DHL92) v3.5.1	carmeB0876
Carg25978	Melon (DHL92) v3.6.1	carmedB0884
Carg25978	Watermelon (Charleston Gray)	carwcgB0864
Carg25978	Watermelon (97103) v1	carwmB0892