Carg17851 (gene) Silver-seed gourd

Overview
NameCarg17851
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTubulin beta chain
LocationCucurbita_argyrosperma_scaffold_070 : 530017 .. 530921 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGTCTACCGCCGGAACCGACCCCATTTTGTTCTCTTTCGCCGGAGCTTGCTCGGTAAGTTTCAATTTCTCAGATCTGATTGCTGCATTTGATTCCTTCCGTGTTCTAGATTTGGAAAACTAAGAGTGATCTGGTATTGTCTTATTCTCACATAGAAATGTCATGAATCTGTAATTTGATCGGGTTTCTTTCGAACTCTATGGAATATTCTGGCACCGAAATTTGATGAATCTGTGATTTGTGCTGGGTGATTTGGTTGAAGTTCACTGCATTGTGTGGAATTTCACTTCCTTGTTTGGAATGCTTCCGATCCAATGTCTACGATGATATTGAAATGTATGCATTCGATGCAGAGGATTTTGAGTTTCGATGTCTTATTGATCTCATTTTGCTGATCTTCTATTCTGTGTTCTTTGATTTTGGTGCCAATCGAATTATGTGTTTAACTTCAGAGTGTTCTTGTGGACAGTAAGAAGATGAGGGAGATTCTCCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAAATCTATGTCTCAGATCATCTTGTGCTTGA

mRNA sequence

CCGTCTACCGCCGGAACCGACCCCATTTTGTTCTCTTTCGCCGGAGCTTGCTCGGTAAGTTTCAATTTCTCAGATCTGATTGCTGCATTTGATTCCTTCCGTGTTCTAGATTTGGAAAACTAAGAGTGATCTGGTATTGTCTTATTCTCACATAGAAATGTCATGAATCTGTAATTTGATCGGGTTTCTTTCGAACTCTATGGAATATTCTGGCACCGAAATTTGATGAATCTGTGATTTGTGCTGGGTGATTTGGTTGAAGTTCACTGCATTGTGTGGAATTTCACTTCCTTGTTTGGAATGCTTCCGATCCAATGTCTACGATGATATTGAAATTAAGAAGATGAGGGAGATTCTCCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAAATCTATGTCTCAGATCATCTTGTGCTTGA

Coding sequence (CDS)

ATGAGGGAGATTCTCCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACACTGGAACCTCCGATTTGCAGCTTGAACGTGTAAATGTGTATTACAATGAGGCTTCTTGTGGGCGTTATGTCCCTCGTGCTGTGCTCATGGATCTGGAGCCTGGTACCATGGACAGTGTGAGGACAGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTTTTTGGGCAATCTGGGGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCAGAACTCATTGATGCTGTGCTCGACGTCGTGAGAAAGGAAGCCGAGAATTGTGATTGCCTTCAAGGTATAAATCTATGTCTCAGATCATCTTGTGCTTGA

Protein sequence

MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGINLCLRSSCA
Homology
[Close]
BLAST of Carg17851 vs. NCBI nr
Match: XP_004139067.1 (PREDICTED: tubulin beta-6 chain [Cucumis sativus] >KGN66563.1 hypothetical protein Csa_1G629200 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. NCBI nr
Match: XP_008450322.1 (PREDICTED: tubulin beta-6 chain [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. NCBI nr
Match: XP_022153267.1 (tubulin beta-6 chain-like [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. NCBI nr
Match: XP_022961097.1 (tubulin beta-6 chain [Cucurbita moschata] >XP_022961098.1 tubulin beta-6 chain [Cucurbita moschata] >XP_022988111.1 tubulin beta-6 chain [Cucurbita maxima] >XP_022988112.1 tubulin beta-6 chain [Cucurbita maxima] >XP_023516484.1 tubulin beta-6 chain [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.4 bits (747), Expect = 8.6e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. NCBI nr
Match: XP_022925330.1 (tubulin beta-6 chain-like [Cucurbita moschata] >XP_022925337.1 tubulin beta-6 chain-like [Cucurbita moschata])

HSP 1 Score: 291.2 bits (744), Expect = 1.9e-75
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. TAIR10
Match: AT5G12250.1 (beta-6 tubulin)

HSP 1 Score: 286.6 bits (732), Expect = 8.5e-78
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. TAIR10
Match: AT5G62690.1 (tubulin beta chain 2)

HSP 1 Score: 276.6 bits (706), Expect = 8.8e-75
Identity = 122/136 (89.71%), Postives = 131/136 (96.32%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. TAIR10
Match: AT5G62700.1 (tubulin beta chain 3)

HSP 1 Score: 276.6 bits (706), Expect = 8.8e-75
Identity = 122/136 (89.71%), Postives = 131/136 (96.32%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. TAIR10
Match: AT1G75780.1 (tubulin beta-1 chain)

HSP 1 Score: 275.4 bits (703), Expect = 2.0e-74
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTS-DLQLERVNVYYNEASCGRY 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHG+DPTGRY G S DLQLER+NVYYNEAS GRY
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60

Query: 61  VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
           VPRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV
Sbjct: 61  VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120

Query: 121 VRKEAENCDCLQGINLC 137
           VRKEAENCDCLQG  +C
Sbjct: 121 VRKEAENCDCLQGFQVC 137

[Close]
BLAST of Carg17851 vs. TAIR10
Match: AT5G23860.1 (tubulin beta 8)

HSP 1 Score: 273.5 bits (698), Expect = 7.5e-74
Identity = 122/136 (89.71%), Postives = 130/136 (95.59%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+C EHGID TGRY G +DLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. Swiss-Prot
Match: sp|Q9ZPN9|TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-76
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. Swiss-Prot
Match: sp|Q9ZRB1|TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum OX=4565 GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-76
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. Swiss-Prot
Match: sp|P93176|TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-76
Identity = 128/136 (94.12%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. Swiss-Prot
Match: sp|P29514|TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.5e-76
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. Swiss-Prot
Match: sp|Q43594|TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-76
Identity = 128/136 (94.12%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY GTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. TrEMBL
Match: tr|A0A1S3BNZ0|A0A1S3BNZ0_CUCME (Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103491964 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. TrEMBL
Match: tr|A0A0A0LXT7|A0A0A0LXT7_CUCSA (Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G629200 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-76
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. TrEMBL
Match: tr|A7KQH4|A7KQH4_EUCGR (Tubulin beta chain OS=Eucalyptus grandis OX=71139 GN=TUB5 PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.8e-75
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQIC 136

[Close]
BLAST of Carg17851 vs. TrEMBL
Match: tr|A0A1U8AVA7|A0A1U8AVA7_NELNU (Tubulin beta chain OS=Nelumbo nucifera OX=4432 GN=LOC104607854 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 8.2e-75
Identity = 130/136 (95.59%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILHVQGGQCGNQIGSKFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRFV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVV
Sbjct: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

[Close]
BLAST of Carg17851 vs. TrEMBL
Match: tr|A0A1J3FZX9|A0A1J3FZX9_NOCCA (Tubulin beta chain OS=Noccaea caerulescens OX=107243 GN=GA_TR15910_c7_g1_i1_g.50286 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 8.2e-75
Identity = 129/136 (94.85%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 1   MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYV 60
           MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRYTG SDLQLERVNVYYNEASCGRYV
Sbjct: 1   MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRYV 60

Query: 61  PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
           PRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
Sbjct: 61  PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120

Query: 121 RKEAENCDCLQGINLC 137
           RKEAENCDCLQG  +C
Sbjct: 121 RKEAENCDCLQGFQVC 136

The following BLAST results are available for this feature:
BLAST of Carg17851 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139067.18.6e-7697.79PREDICTED: tubulin beta-6 chain [Cucumis sativus] >KGN66563.1 hypothetical prote... [more]
XP_008450322.18.6e-7697.79PREDICTED: tubulin beta-6 chain [Cucumis melo][more]
XP_022153267.18.6e-7697.79tubulin beta-6 chain-like [Momordica charantia][more]
XP_022961097.18.6e-7697.79tubulin beta-6 chain [Cucurbita moschata] >XP_022961098.1 tubulin beta-6 chain [... [more]
XP_022925330.11.9e-7597.06tubulin beta-6 chain-like [Cucurbita moschata] >XP_022925337.1 tubulin beta-6 ch... [more]
BLAST of Carg17851 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12250.18.5e-7894.12beta-6 tubulin[more]
AT5G62690.18.8e-7589.71tubulin beta chain 2[more]
AT5G62700.18.8e-7589.71tubulin beta chain 3[more]
AT1G75780.12.0e-7491.24tubulin beta-1 chain[more]
AT5G23860.17.5e-7489.71tubulin beta 8[more]
BLAST of Carg17851 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZPN9|TBB2_ELEIN1.2e-7694.12Tubulin beta-2 chain OS=Eleusine indica OX=29674 GN=TUBB2 PE=2 SV=1[more]
sp|Q9ZRB1|TBB2_WHEAT1.2e-7694.12Tubulin beta-2 chain OS=Triticum aestivum OX=4565 GN=TUBB2 PE=2 SV=1[more]
sp|P93176|TBB_HORVU1.2e-7694.12Tubulin beta chain OS=Hordeum vulgare OX=4513 GN=TUBB PE=2 SV=1[more]
sp|P29514|TBB6_ARATH1.5e-7694.12Tubulin beta-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBB6 PE=2 SV=1[more]
sp|Q43594|TBB1_ORYSJ2.0e-7694.12Tubulin beta-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB1 PE=2 SV=2[more]
BLAST of Carg17851 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BNZ0|A0A1S3BNZ0_CUCME5.7e-7697.79Tubulin beta chain OS=Cucumis melo OX=3656 GN=LOC103491964 PE=3 SV=1[more]
tr|A0A0A0LXT7|A0A0A0LXT7_CUCSA5.7e-7697.79Tubulin beta chain OS=Cucumis sativus OX=3659 GN=Csa_1G629200 PE=3 SV=1[more]
tr|A7KQH4|A7KQH4_EUCGR2.8e-7596.32Tubulin beta chain OS=Eucalyptus grandis OX=71139 GN=TUB5 PE=2 SV=1[more]
tr|A0A1U8AVA7|A0A1U8AVA7_NELNU8.2e-7595.59Tubulin beta chain OS=Nelumbo nucifera OX=4432 GN=LOC104607854 PE=3 SV=1[more]
tr|A0A1J3FZX9|A0A1J3FZX9_NOCCA8.2e-7594.85Tubulin beta chain OS=Noccaea caerulescens OX=107243 GN=GA_TR15910_c7_g1_i1_g.50... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: INTERPRO
TermDefinition
IPR013838Beta-tubulin_BS
IPR003008Tubulin_FtsZ_GTPase
IPR036525Tubulin/FtsZ_GTPase_sf
IPR000217Tubulin
IPR002453Beta_tubulin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17851-RACarg17851-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002453Beta tubulinPRINTSPR01163BETATUBULINcoord: 88..99
score: 94.76
coord: 41..58
score: 75.84
coord: 108..126
score: 84.57
IPR000217TubulinPRINTSPR01161TUBULINcoord: 93..104
score: 76.26
coord: 51..70
score: 66.6
coord: 10..30
score: 71.89
coord: 106..130
score: 68.98
IPR000217TubulinPANTHERPTHR11588TUBULINcoord: 1..137
IPR036525Tubulin/FtsZ, GTPase domain superfamilyGENE3DG3DSA:3.40.50.1440coord: 1..140
e-value: 3.5E-65
score: 222.1
IPR036525Tubulin/FtsZ, GTPase domain superfamilySUPERFAMILYSSF52490Tubulin nucleotide-binding domain-likecoord: 1..137
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..136
e-value: 4.9E-38
score: 131.2
NoneNo IPR availablePANTHERPTHR11588:SF106TUBULIN BETA-6 CHAINcoord: 1..137
IPR013838Beta tubulin, autoregulation binding sitePROSITEPS00228TUBULIN_B_AUTOREGcoord: 1..4